Wall clock time and date at job start Tue Mar 31 2020 14:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29156 * 124.79099 * 2 1 4 4 C 1.31358 * 117.32181 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.91742 * 179.97438 * 4 3 2 6 6 C 1.35397 * 114.16307 * 0.23211 * 4 3 2 7 7 C 1.47109 * 126.12058 * 179.77154 * 6 4 3 8 8 N 1.31289 * 126.32549 * 359.68475 * 7 6 4 9 9 N 1.28645 * 109.39378 * 179.82754 * 8 7 6 10 10 C 1.31221 * 109.48877 * 0.44517 * 9 8 7 11 11 S 1.76199 * 126.26566 * 179.69382 * 10 9 8 12 12 C 1.81001 * 99.99972 * 0.04486 * 11 10 9 13 13 C 1.53000 * 109.47078 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.46971 * 59.99925 * 13 12 11 15 15 O 1.42902 * 109.47001 * 299.99813 * 13 12 11 16 16 C 1.50704 * 109.47061 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00132 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99851 * 180.02562 * 16 13 12 19 19 N 1.31518 * 120.00177 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99788 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47208 * 89.99713 * 20 18 16 22 22 H 1.48501 * 109.46880 * 209.99663 * 20 18 16 23 23 H 1.48496 * 109.47192 * 329.99987 * 20 18 16 24 24 O 1.34754 * 107.47027 * 359.73217 * 10 9 8 25 25 S 1.70948 * 124.79071 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46880 * 90.00058 * 1 2 3 27 27 H 1.09000 * 109.47488 * 210.00141 * 1 2 3 28 28 H 1.09004 * 109.47210 * 330.00481 * 1 2 3 29 29 H 1.09001 * 109.46953 * 90.02603 * 5 4 3 30 30 H 1.09000 * 109.47318 * 210.02200 * 5 4 3 31 31 H 1.09000 * 109.47161 * 330.02831 * 5 4 3 32 32 H 1.09008 * 109.47205 * 300.00023 * 12 11 10 33 33 H 1.09000 * 109.47013 * 59.99888 * 12 11 10 34 34 H 0.96700 * 113.99927 * 300.00041 * 15 13 12 35 35 H 0.96995 * 119.99848 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2439 1.0607 0.0000 4 6 3.5464 0.8899 0.0005 5 6 4.5228 2.0378 0.0000 6 6 3.9353 -0.4070 -0.0040 7 6 5.3226 -0.8962 -0.0093 8 7 6.4078 -0.1574 -0.0164 9 7 7.4439 -0.9200 -0.0157 10 6 7.0631 -2.1758 -0.0178 11 16 8.1202 -3.5854 -0.0255 12 6 9.7349 -2.7674 -0.0276 13 6 10.8417 -3.8237 -0.0349 14 1 10.7469 -4.4430 -0.9268 15 8 10.7248 -4.6441 1.1294 16 6 12.1860 -3.1427 -0.0360 17 1 12.2451 -2.0643 -0.0323 18 6 13.3406 -3.8963 -0.0428 19 7 13.2687 -5.2095 -0.0478 20 14 15.0069 -3.0521 -0.0449 21 1 15.4531 -2.8338 1.3546 22 1 15.9941 -3.9073 -0.7515 23 1 14.8983 -1.7440 -0.7394 24 8 5.7157 -2.1899 -0.0139 25 16 2.4824 -1.4039 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 4.7583 2.3150 1.0276 30 1 5.4362 1.7377 -0.5137 31 1 4.0803 2.8911 -0.5141 32 1 9.8242 -2.1419 -0.9159 33 1 9.8294 -2.1477 0.8641 34 1 10.7996 -4.1582 1.9620 35 1 14.0809 -5.7396 -0.0529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472973794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:05 Heat of formation + Delta-G solvation = 8.197476 kcal Electronic energy + Delta-G solvation = -21656.338370 eV Core-core repulsion = 18101.849747 eV Total energy + Delta-G solvation = -3554.488623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.27299 -41.20199 -37.99557 -37.46902 -35.00263 -34.30906 -32.53322 -31.67963 -30.20543 -29.20734 -27.41994 -25.35772 -24.78546 -23.93173 -23.04879 -21.10841 -19.62060 -19.22319 -18.92442 -18.75336 -17.58938 -17.04062 -16.71541 -16.40952 -16.32005 -16.12401 -15.58970 -15.17734 -14.52011 -14.45468 -14.28760 -13.85109 -13.77205 -13.56504 -13.32578 -13.29089 -13.13840 -12.99700 -12.84687 -12.78714 -12.75314 -12.36621 -12.16083 -12.08031 -11.74767 -11.20122 -10.96499 -10.74931 -10.56224 -10.38529 -9.90666 -8.90117 -8.18562 -6.44781 -1.19118 -0.61590 -0.13917 0.03237 0.36208 0.89481 1.00213 1.36769 1.42980 1.44894 1.54887 1.55420 2.39153 2.84336 2.99324 3.08660 3.55325 3.66813 3.81767 4.00198 4.00672 4.08477 4.11406 4.20259 4.47673 4.60405 4.63999 4.67151 4.84118 4.84698 5.10569 5.24863 5.45821 5.64135 5.93130 6.40136 6.63898 6.84470 7.27079 7.42950 8.85864 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.034321 B = 0.002327 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.633445 B =12028.028801 C =12742.953824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.079 3.921 3 N -0.494 5.494 4 C 0.150 3.850 5 C -0.091 4.091 6 C -0.234 4.234 7 C 0.241 3.759 8 N -0.272 5.272 9 N -0.308 5.308 10 C 0.138 3.862 11 S 0.094 5.906 12 C -0.119 4.119 13 C 0.248 3.752 14 H 0.043 0.957 15 O -0.572 6.572 16 C -0.581 4.581 17 H 0.065 0.935 18 C 0.031 3.969 19 N -0.894 5.894 20 Si 0.962 3.038 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.266 1.266 24 O -0.209 6.209 25 S 0.214 5.786 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.363 0.637 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.403 9.190 0.485 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.197 4.197 3 N -0.210 5.210 4 C 0.011 3.989 5 C -0.150 4.150 6 C -0.356 4.356 7 C 0.028 3.972 8 N -0.120 5.120 9 N -0.160 5.160 10 C -0.178 4.178 11 S 0.326 5.674 12 C -0.268 4.268 13 C 0.188 3.812 14 H 0.061 0.939 15 O -0.376 6.376 16 C -0.620 4.620 17 H 0.083 0.917 18 C -0.173 4.173 19 N -0.530 5.530 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.190 1.190 24 O -0.092 6.092 25 S 0.472 5.528 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.380 7.771 0.016 27.501 hybrid contribution 1.499 1.595 0.297 2.209 sum -24.880 9.366 0.313 26.587 Atomic orbital electron populations 1.20864 0.81010 1.06406 1.06159 1.28215 1.03947 0.90353 0.97137 1.66324 1.03257 1.32030 1.19378 1.20895 0.90920 0.92967 0.94155 1.20687 0.95976 0.93975 1.04368 1.22385 0.90876 0.97726 1.24646 1.24039 0.95090 0.77084 1.00998 1.74496 0.93786 1.26148 1.17616 1.74924 1.22343 0.98200 1.20540 1.30617 0.82637 1.02114 1.02459 1.86373 0.95946 0.95891 1.89201 1.24787 0.91561 1.03418 1.07041 1.19021 0.89183 0.86770 0.86273 0.93914 1.86538 1.95222 1.39749 1.16106 1.21813 0.91319 0.93735 1.55177 0.91686 1.25845 1.03018 0.95264 0.93131 1.70186 1.29543 1.05706 1.47552 0.85513 0.78769 0.78559 0.78485 1.19781 1.20838 1.19048 1.85045 1.22073 1.30387 1.71664 1.84037 0.92820 1.09487 1.66480 0.86901 0.87167 0.87790 0.89128 0.89818 0.88630 0.88506 0.88587 0.79123 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.46 71.24 0.75 0.34 16 2 C 0.08 1.14 7.38 88.50 0.65 1.79 16 3 N -0.49 -9.90 10.51 -178.38 -1.87 -11.77 16 4 C 0.15 3.46 6.79 41.97 0.29 3.75 16 5 C -0.09 -1.91 9.82 71.24 0.70 -1.21 16 6 C -0.23 -5.85 6.50 23.94 0.16 -5.69 16 7 C 0.24 7.53 8.17 87.10 0.71 8.24 16 8 N -0.27 -9.41 9.86 -166.35 -1.64 -11.05 16 9 N -0.31 -11.52 11.61 -171.86 -2.00 -13.51 16 10 C 0.14 4.87 8.53 130.33 1.11 5.98 16 11 S 0.09 3.28 21.95 -56.49 -1.24 2.04 16 12 C -0.12 -4.67 4.86 71.98 0.35 -4.32 16 13 C 0.25 11.83 2.87 29.85 0.09 11.91 16 14 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 15 O -0.57 -27.43 12.32 -148.98 -1.84 -29.27 16 16 C -0.58 -30.18 8.76 25.60 0.22 -29.96 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.03 1.67 5.40 84.65 0.46 2.12 16 19 N -0.89 -50.93 12.84 21.45 0.28 -50.65 16 20 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 O -0.21 -6.90 10.93 -16.10 -0.18 -7.07 16 25 S 0.21 3.65 23.17 -56.49 -1.31 2.34 16 26 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 2.05 6.09 -2.39 -0.01 2.03 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 34 H 0.36 15.26 9.04 -74.06 -0.67 14.59 16 35 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -66.01 339.88 -1.80 -67.81 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.49 Total: 14.28 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.48 Total: -7.04 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -5.23 Total: -86.98 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -2.01 Total: -36.34 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -2.55 Total: 4.38 kcal Total: -66.01 -1.80 -67.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472973794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.012 kcal (2) G-P(sol) polarization free energy of solvation -66.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds