Wall clock time and date at job start Tue Mar 31 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46497 * 114.39270 * 272.67560 * 15 14 13 17 17 C 1.34780 * 120.00114 * 248.58446 * 16 15 14 18 18 O 1.21634 * 119.99758 * 0.02562 * 17 16 15 19 19 C 1.47098 * 120.00355 * 180.02562 * 17 16 15 20 20 C 1.38389 * 127.99803 * 179.70500 * 19 17 16 21 21 C 1.37577 * 111.25724 * 179.88580 * 20 19 17 22 22 N 1.29554 * 117.95479 * 0.43207 * 21 20 19 23 23 S 1.56308 * 110.37749 * 359.75367 * 22 21 20 24 24 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 25 25 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 27 27 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 28 28 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 29 29 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 30 30 H 1.08999 * 114.26576 * 139.79094 * 15 14 13 31 31 H 0.97005 * 120.00089 * 68.58416 * 16 15 14 32 32 H 1.07996 * 124.36845 * 0.02695 * 20 19 17 33 33 H 1.08005 * 121.01822 * 180.18930 * 21 20 19 34 34 H 1.09001 * 113.46952 * 321.86856 * 24 13 11 35 35 H 1.08996 * 113.46849 * 92.31026 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 7 4.0364 -7.7816 2.1376 17 6 5.0297 -8.3029 2.8846 18 8 5.9782 -8.8407 2.3454 19 6 4.9670 -8.2214 4.3520 20 6 5.8829 -8.7011 5.2719 21 6 5.4819 -8.4345 6.5606 22 7 4.3582 -7.8125 6.7306 23 16 3.6983 -7.4938 5.3500 24 6 2.7297 -7.8092 -0.0165 25 1 -0.4851 0.8400 -0.0004 26 1 3.1212 -3.7293 -0.8992 27 1 3.1279 -3.7332 0.8807 28 1 4.7224 -6.6035 -1.0299 29 1 4.8324 -5.7788 0.5838 30 1 4.7503 -8.6595 0.3166 31 1 3.2802 -7.3524 2.5676 32 1 6.7958 -9.2160 5.0115 33 1 6.0835 -8.7380 7.4047 34 1 1.9144 -8.1821 0.6034 35 1 2.7319 -8.2428 -1.0165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498221540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:52 Heat of formation + Delta-G solvation = -5.779764 kcal Electronic energy + Delta-G solvation = -21804.857323 eV Core-core repulsion = 18249.762602 eV Total energy + Delta-G solvation = -3555.094722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84853 -40.65513 -39.83348 -38.77625 -34.94213 -34.60082 -32.67051 -31.78416 -29.23560 -27.69016 -27.13638 -26.89485 -24.00878 -22.35313 -21.24819 -20.37067 -19.83221 -19.50313 -18.13640 -17.87275 -17.50721 -16.93105 -16.85994 -16.60943 -16.33966 -16.07448 -15.76157 -15.29317 -15.10906 -14.72967 -14.56863 -14.24047 -14.15774 -13.71651 -13.48751 -13.19945 -13.07837 -12.92664 -12.59291 -12.40767 -12.11934 -11.78080 -11.73129 -11.36597 -11.17213 -10.95934 -10.84577 -10.32059 -10.29419 -9.88281 -9.82587 -8.68867 -8.36313 -6.14596 -0.79439 0.21755 0.83310 1.18197 1.20257 1.40387 1.42085 1.53382 1.56883 1.78445 1.90979 1.98601 2.25663 2.98047 3.15026 3.29130 3.49842 3.60116 3.88950 3.98538 4.07039 4.16563 4.31117 4.44599 4.49465 4.60395 4.62018 4.67859 4.72860 4.85394 4.87720 5.29342 5.40566 5.47260 6.18225 6.18570 6.55586 6.86923 7.05259 7.08913 8.73063 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.002872 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.224672 B = 9746.171495 C =10877.747288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.146 6.146 10 C -0.121 4.121 11 C 0.562 3.438 12 O -0.564 6.564 13 N -0.653 5.653 14 C 0.085 3.915 15 C 0.119 3.881 16 N -0.700 5.700 17 C 0.610 3.390 18 O -0.546 6.546 19 C -0.291 4.291 20 C -0.097 4.097 21 C 0.062 3.938 22 N -0.543 5.543 23 S 0.423 5.577 24 C 0.098 3.902 25 H 0.272 0.728 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.407 0.593 32 H 0.195 0.805 33 H 0.216 0.784 34 H 0.080 0.920 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.520 -20.767 7.604 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.081 5.919 10 C -0.272 4.272 11 C 0.352 3.648 12 O -0.442 6.442 13 N -0.390 5.390 14 C -0.038 4.038 15 C 0.013 3.987 16 N -0.351 5.351 17 C 0.396 3.604 18 O -0.425 6.425 19 C -0.425 4.425 20 C -0.133 4.133 21 C -0.130 4.130 22 N -0.373 5.373 23 S 0.579 5.421 24 C -0.025 4.025 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.148 0.852 29 H 0.101 0.899 30 H 0.169 0.831 31 H 0.242 0.758 32 H 0.212 0.788 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.291 -20.148 7.925 24.896 hybrid contribution 2.512 0.782 -0.016 2.631 sum 14.802 -19.366 7.909 25.627 Atomic orbital electron populations 1.70178 1.07920 1.28590 1.47950 1.26105 0.95963 1.03245 0.93705 0.84919 0.78586 0.76397 0.78134 1.18125 1.19875 1.19884 1.23207 0.95256 0.91999 1.58914 0.90108 1.85547 1.10251 0.99100 1.97020 1.23273 1.03470 0.94221 1.06196 1.19531 0.85026 0.85321 0.74962 1.90704 1.16855 1.85535 1.51106 1.49724 1.09265 1.06537 1.73483 1.23927 0.80033 0.96676 1.03160 1.22337 0.98372 0.99065 0.78925 1.45482 1.23833 1.59005 1.06738 1.16735 0.81990 0.77422 0.84240 1.90820 1.33581 1.44956 1.73118 1.26808 1.05076 1.12196 0.98412 1.22448 1.01318 0.99314 0.90245 1.22817 0.92853 0.98009 0.99329 1.72288 1.16089 1.21849 1.27068 1.81963 1.22756 1.47637 0.89778 1.23621 0.97157 0.78811 1.02876 0.91942 0.87818 0.87905 0.85219 0.89947 0.83052 0.75788 0.78795 0.76745 0.90168 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 10 C -0.12 -4.77 5.98 71.24 0.43 -4.35 16 11 C 0.56 20.38 8.10 87.66 0.71 21.09 16 12 O -0.56 -25.72 16.64 -3.02 -0.05 -25.77 16 13 N -0.65 -15.43 3.69 -857.81 -3.16 -18.60 16 14 C 0.09 1.28 8.25 83.26 0.69 1.97 16 15 C 0.12 1.55 4.62 45.56 0.21 1.76 16 16 N -0.70 -10.98 5.39 -445.06 -2.40 -13.38 16 17 C 0.61 11.05 7.80 86.57 0.68 11.72 16 18 O -0.55 -12.39 16.55 -4.14 -0.07 -12.45 16 19 C -0.29 -4.73 6.76 24.63 0.17 -4.57 16 20 C -0.10 -1.24 10.40 22.15 0.23 -1.01 16 21 C 0.06 0.77 11.14 84.87 0.95 1.72 16 22 N -0.54 -9.84 11.29 -85.49 -0.97 -10.81 16 23 S 0.42 7.06 22.81 -56.49 -1.29 5.77 16 24 C 0.10 1.52 8.38 83.18 0.70 2.22 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 27 H 0.10 3.73 8.14 -2.40 -0.02 3.71 16 28 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.15 1.52 7.45 -2.39 -0.02 1.50 16 31 H 0.41 6.44 8.14 -92.70 -0.75 5.68 16 32 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -82.17 344.14 -0.53 -82.70 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.39 Total: 10.11 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.86 Total: 1.49 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -6.24 Total: -98.01 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.12 Total: -38.23 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.45 Total: -3.46 kcal Total: -82.17 -0.53 -82.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498221540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.925 kcal (2) G-P(sol) polarization free energy of solvation -82.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds