Wall clock time and date at job start Tue Mar 31 2020 15:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99482 * 2 1 4 4 H 1.48496 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47587 * 299.99748 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00152 * 3 2 1 7 7 C 1.37871 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99965 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47145 * 180.02562 * 9 7 2 11 11 S 1.65600 * 120.00099 * 165.41119 * 10 9 7 12 12 O 1.42100 * 106.40322 * 310.90004 * 11 10 9 13 13 O 1.42103 * 106.40464 * 177.98535 * 11 10 9 14 14 C 1.76203 * 107.22085 * 64.44202 * 11 10 9 15 15 C 1.38051 * 120.04545 * 242.47213 * 14 11 10 16 16 C 1.38308 * 120.16478 * 179.77163 * 15 14 11 17 17 C 1.38288 * 120.26763 * 0.49743 * 16 15 14 18 18 C 1.38251 * 120.08833 * 359.75734 * 17 16 15 19 19 F 1.35102 * 120.08263 * 179.97438 * 18 17 16 20 20 C 1.39261 * 120.04359 * 62.74505 * 14 11 10 21 21 C 1.48435 * 120.13155 * 0.02562 * 20 14 11 22 22 N 1.34056 * 126.67260 * 353.27378 * 21 20 14 23 23 N 1.28991 * 107.26045 * 179.97438 * 22 21 20 24 24 N 1.28725 * 108.95041 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.34177 * 180.02562 * 24 23 22 26 26 N 1.28876 * 109.31675 * 359.76962 * 24 23 22 27 27 H 0.96997 * 120.00041 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47099 * 60.00004 * 9 7 2 29 29 H 1.08998 * 109.47546 * 300.00197 * 9 7 2 30 30 H 0.97001 * 120.00335 * 345.40985 * 10 9 7 31 31 H 1.07999 * 119.91398 * 0.02562 * 15 14 11 32 32 H 1.07998 * 119.86701 * 180.25516 * 16 15 14 33 33 H 1.08002 * 119.95742 * 179.72616 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 7 2.2033 -3.6125 -0.0015 11 16 1.6862 -5.1440 0.3587 12 8 0.9268 -5.0401 1.5552 13 8 2.8197 -5.9911 0.2288 14 6 0.5581 -5.6247 -0.9066 15 6 -0.7580 -5.8981 -0.5918 16 6 -1.6467 -6.2711 -1.5837 17 6 -1.2214 -6.3826 -2.8948 18 6 0.0954 -6.1165 -3.2213 19 9 0.5110 -6.2260 -4.5021 20 6 0.9942 -5.7349 -2.2245 21 6 2.4097 -5.4485 -2.5674 22 7 3.3484 -4.9559 -1.7469 23 7 4.4388 -4.8565 -2.4287 24 7 4.2195 -5.2641 -3.6298 25 1 4.8775 -5.2917 -4.3420 26 7 2.9898 -5.6350 -3.7362 27 1 -0.4850 0.8400 0.0004 28 1 0.6249 -2.5562 -0.8920 29 1 0.6242 -2.5575 0.8879 30 1 3.1365 -3.4528 -0.2123 31 1 -1.0953 -5.8166 0.4309 32 1 -2.6762 -6.4799 -1.3327 33 1 -1.9186 -6.6786 -3.6647 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:42 Heat of formation + Delta-G solvation = 62.683756 kcal Electronic energy + Delta-G solvation = -26242.516033 eV Core-core repulsion = 22156.469687 eV Total energy + Delta-G solvation = -4086.046346 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.98712 -44.41258 -39.12822 -36.62866 -35.18152 -34.76773 -34.14572 -33.64480 -32.04193 -31.23636 -30.48148 -26.65581 -24.90885 -24.81685 -23.11094 -22.38577 -21.88024 -19.42410 -18.97867 -17.96195 -17.24423 -17.10566 -16.75931 -16.44166 -15.87734 -15.69082 -15.57580 -15.30453 -14.61995 -14.48149 -13.89283 -13.58346 -13.26603 -12.90684 -12.57182 -12.35726 -12.19922 -12.07798 -12.02332 -11.68870 -11.53196 -11.43132 -11.17595 -11.01685 -10.93014 -10.86143 -10.62596 -10.54466 -10.05123 -9.42357 -9.33386 -8.81163 -8.77690 -8.09232 -6.12981 -4.16181 0.26808 0.76315 1.11016 1.24083 2.24411 2.27183 3.25426 3.26764 3.34384 3.38708 3.44783 3.75227 4.01289 4.07554 4.31290 4.39146 4.53508 4.81479 4.98176 5.13627 5.23391 5.24524 5.35782 5.44760 5.77363 5.80594 5.91605 6.00045 6.39709 6.55043 6.62238 7.36057 7.43607 7.86378 8.03468 8.14677 8.32236 8.89469 9.48187 10.97584 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.005472 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.541156 B = 5115.994072 C = 5584.385102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.245 3.755 10 N -1.083 6.083 11 S 2.694 3.306 12 O -0.965 6.965 13 O -0.956 6.956 14 C -0.613 4.613 15 C -0.031 4.031 16 C -0.093 4.093 17 C -0.111 4.111 18 C 0.114 3.886 19 F -0.120 7.120 20 C 0.050 3.950 21 C 0.191 3.809 22 N -0.238 5.238 23 N -0.031 5.031 24 N -0.228 5.228 25 H 0.476 0.524 26 N -0.271 5.271 27 H 0.264 0.736 28 H 0.016 0.984 29 H 0.039 0.961 30 H 0.418 0.582 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -13.438 -8.601 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.121 3.879 10 N -0.849 5.849 11 S 2.778 3.222 12 O -0.955 6.955 13 O -0.945 6.945 14 C -0.697 4.697 15 C -0.050 4.050 16 C -0.112 4.112 17 C -0.129 4.129 18 C 0.092 3.908 19 F -0.098 7.098 20 C 0.045 3.955 21 C -0.089 4.089 22 N -0.112 5.112 23 N -0.027 5.027 24 N -0.074 5.074 25 H 0.330 0.670 26 N -0.123 5.123 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.256 0.744 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.496 -13.673 -7.803 15.751 hybrid contribution 0.309 0.977 -1.757 2.034 sum 0.805 -12.695 -9.561 15.913 Atomic orbital electron populations 1.69952 1.05993 1.27058 1.49992 1.24964 0.94961 0.99356 0.94996 0.86397 0.80056 0.83082 0.77626 1.19583 1.21041 1.20759 1.21239 0.93528 0.89855 1.51601 0.91555 1.19065 0.87945 0.83887 0.97002 1.55418 1.19768 1.22473 1.87219 1.02029 0.73003 0.73688 0.73528 1.93560 1.73261 1.86871 1.41767 1.93555 1.47993 1.66599 1.86368 1.31580 1.13229 1.12476 1.12368 1.21092 0.90265 0.92172 1.01506 1.21333 1.00624 0.97632 0.91616 1.21328 0.93524 0.99623 0.98470 1.17545 0.92834 1.01743 0.78662 1.91567 1.90645 1.93253 1.34329 1.16565 0.86113 1.00469 0.92321 1.23330 0.96131 1.02350 0.87056 1.76030 0.95555 1.15363 1.24263 1.78912 1.19548 1.13691 0.90524 1.47713 1.08085 1.40017 1.11550 0.67001 1.74949 0.93707 1.20075 1.23563 0.92645 0.96590 0.94335 0.74373 0.82356 0.83450 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.28 9.27 -34.44 -0.32 -14.60 16 8 H 0.07 1.76 7.65 -52.49 -0.40 1.36 16 9 C 0.24 6.19 5.97 -5.20 -0.03 6.16 16 10 N -1.08 -23.54 4.84 -11.66 -0.06 -23.59 16 11 S 2.69 53.46 4.91 -107.50 -0.53 52.93 16 12 O -0.96 -20.81 16.47 -57.17 -0.94 -21.75 16 13 O -0.96 -19.77 15.11 -57.17 -0.86 -20.63 16 14 C -0.61 -10.50 5.89 -39.27 -0.23 -10.73 16 15 C -0.03 -0.44 9.54 -39.62 -0.38 -0.82 16 16 C -0.09 -1.01 10.04 -39.54 -0.40 -1.40 16 17 C -0.11 -1.23 10.02 -39.56 -0.40 -1.63 16 18 C 0.11 1.65 7.28 -39.09 -0.28 1.36 16 19 F -0.12 -1.71 15.86 2.25 0.04 -1.67 16 20 C 0.05 0.85 5.88 -104.83 -0.62 0.23 16 21 C 0.19 3.36 7.56 -156.31 -1.18 2.18 16 22 N -0.24 -4.41 5.61 32.15 0.18 -4.23 16 23 N -0.03 -0.48 13.47 60.35 0.81 0.33 16 24 N -0.23 -2.76 7.90 60.35 0.48 -2.28 16 25 H 0.48 3.03 8.96 -340.36 -3.05 -0.02 16 26 N -0.27 -4.06 11.13 32.17 0.36 -3.70 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 1.04 7.77 -51.93 -0.40 0.64 16 30 H 0.42 8.82 6.99 -34.47 -0.24 8.58 16 31 H 0.16 2.03 7.34 -52.49 -0.39 1.65 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -35.29 307.61 -8.99 -44.28 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.88 Total: 2.12 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.93 Total: -17.68 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 2.51 Total: -58.33 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.81 Total: -42.38 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.53 Total: 52.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.29 -8.99 -44.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.967 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds