Wall clock time and date at job start Tue Mar 31 2020 15:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99482 * 2 1 4 4 H 1.48496 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47587 * 299.99748 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00152 * 3 2 1 7 7 C 1.37871 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99965 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47145 * 180.02562 * 9 7 2 11 11 S 1.65600 * 120.00099 * 165.41119 * 10 9 7 12 12 O 1.42100 * 106.40322 * 310.90004 * 11 10 9 13 13 O 1.42103 * 106.40464 * 177.98535 * 11 10 9 14 14 C 1.76203 * 107.22085 * 64.44202 * 11 10 9 15 15 C 1.38051 * 120.04545 * 242.47213 * 14 11 10 16 16 C 1.38308 * 120.16478 * 179.77163 * 15 14 11 17 17 C 1.38288 * 120.26763 * 0.49743 * 16 15 14 18 18 C 1.38251 * 120.08833 * 359.75734 * 17 16 15 19 19 F 1.35102 * 120.08263 * 179.97438 * 18 17 16 20 20 C 1.39261 * 120.04359 * 62.74505 * 14 11 10 21 21 C 1.48435 * 120.13155 * 0.02562 * 20 14 11 22 22 N 1.34056 * 126.67260 * 353.27378 * 21 20 14 23 23 N 1.28991 * 107.26045 * 179.97438 * 22 21 20 24 24 N 1.28725 * 108.95041 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.34177 * 180.02562 * 24 23 22 26 26 N 1.28876 * 109.31675 * 359.76962 * 24 23 22 27 27 H 0.96997 * 120.00041 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47099 * 60.00004 * 9 7 2 29 29 H 1.08998 * 109.47546 * 300.00197 * 9 7 2 30 30 H 0.97001 * 120.00335 * 345.40985 * 10 9 7 31 31 H 1.07999 * 119.91398 * 0.02562 * 15 14 11 32 32 H 1.07998 * 119.86701 * 180.25516 * 16 15 14 33 33 H 1.08002 * 119.95742 * 179.72616 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 7 2.2033 -3.6125 -0.0015 11 16 1.6862 -5.1440 0.3587 12 8 0.9268 -5.0401 1.5552 13 8 2.8197 -5.9911 0.2288 14 6 0.5581 -5.6247 -0.9066 15 6 -0.7580 -5.8981 -0.5918 16 6 -1.6467 -6.2711 -1.5837 17 6 -1.2214 -6.3826 -2.8948 18 6 0.0954 -6.1165 -3.2213 19 9 0.5110 -6.2260 -4.5021 20 6 0.9942 -5.7349 -2.2245 21 6 2.4097 -5.4485 -2.5674 22 7 3.3484 -4.9559 -1.7469 23 7 4.4388 -4.8565 -2.4287 24 7 4.2195 -5.2641 -3.6298 25 1 4.8775 -5.2917 -4.3420 26 7 2.9898 -5.6350 -3.7362 27 1 -0.4850 0.8400 0.0004 28 1 0.6249 -2.5562 -0.8920 29 1 0.6242 -2.5575 0.8879 30 1 3.1365 -3.4528 -0.2123 31 1 -1.0953 -5.8166 0.4309 32 1 -2.6762 -6.4799 -1.3327 33 1 -1.9186 -6.6786 -3.6647 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:41 Heat of formation + Delta-G solvation = 35.189113 kcal Electronic energy + Delta-G solvation = -26243.708290 eV Core-core repulsion = 22156.469687 eV Total energy + Delta-G solvation = -4087.238603 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.05823 -45.60274 -40.18804 -38.23048 -36.80868 -36.50056 -35.53625 -34.81459 -34.04495 -32.32546 -31.56602 -28.68037 -26.07068 -25.98321 -24.44939 -24.19221 -23.01626 -20.69944 -20.31015 -19.37596 -18.93038 -18.31658 -17.99834 -17.63291 -17.49041 -17.02039 -16.93880 -16.74638 -16.29273 -15.59497 -15.29053 -15.05502 -14.57383 -14.47007 -14.06098 -13.91943 -13.66741 -13.48676 -13.27077 -13.20682 -13.06700 -12.97452 -12.78891 -12.50259 -12.44836 -12.16085 -12.13243 -12.06348 -11.84071 -11.35840 -10.81191 -10.49442 -9.99931 -9.86224 -8.23545 -6.34477 -0.86985 -0.44041 -0.26266 0.06033 1.07124 1.29588 1.42218 1.43866 1.56440 2.08075 2.25368 2.35999 2.43674 2.80420 2.85086 2.94955 3.10821 3.46329 3.77621 3.90007 3.94761 4.07906 4.28371 4.30422 4.66105 4.69955 4.77051 4.93662 5.03520 5.29712 5.36100 5.53361 5.58685 5.77015 6.06047 6.44399 6.81113 6.93528 7.34344 8.87892 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.005472 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.541156 B = 5115.994072 C = 5584.385102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.261 3.739 10 N -1.087 6.087 11 S 2.707 3.293 12 O -0.992 6.992 13 O -0.970 6.970 14 C -0.635 4.635 15 C -0.042 4.042 16 C -0.074 4.074 17 C -0.089 4.089 18 C 0.105 3.895 19 F -0.121 7.121 20 C 0.023 3.977 21 C 0.171 3.829 22 N -0.276 5.276 23 N -0.041 5.041 24 N -0.194 5.194 25 H 0.497 0.503 26 N -0.267 5.267 27 H 0.268 0.732 28 H 0.004 0.996 29 H 0.015 0.985 30 H 0.419 0.581 31 H 0.165 0.835 32 H 0.199 0.801 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -13.820 -10.243 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.136 3.864 10 N -0.851 5.851 11 S 2.796 3.204 12 O -0.982 6.982 13 O -0.959 6.959 14 C -0.723 4.723 15 C -0.061 4.061 16 C -0.093 4.093 17 C -0.107 4.107 18 C 0.082 3.918 19 F -0.099 7.099 20 C 0.018 3.982 21 C -0.109 4.109 22 N -0.150 5.150 23 N -0.036 5.036 24 N -0.046 5.046 25 H 0.357 0.643 26 N -0.120 5.120 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.257 0.743 31 H 0.182 0.818 32 H 0.216 0.784 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.585 -14.045 -9.415 16.919 hybrid contribution 0.609 0.968 -1.375 1.789 sum 0.025 -13.076 -10.791 16.954 Atomic orbital electron populations 1.70054 1.07432 1.28227 1.50515 1.25842 0.95866 1.02938 0.94366 0.85339 0.78921 0.78512 0.77872 1.18895 1.20252 1.20171 1.21594 0.93880 0.91065 1.51874 0.91419 1.18622 0.87995 0.84609 0.95126 1.55289 1.19410 1.22686 1.87675 1.01231 0.72959 0.72765 0.73488 1.93515 1.73629 1.87007 1.44091 1.93527 1.49254 1.66289 1.86828 1.30939 1.13955 1.15851 1.11574 1.21445 0.89631 0.92001 1.03042 1.21885 1.02091 0.94887 0.90473 1.21910 0.92494 0.96645 0.99683 1.17818 0.93767 1.02052 0.78149 1.91559 1.90880 1.93288 1.34217 1.16780 0.86435 1.02107 0.92912 1.23671 0.96805 1.02914 0.87543 1.75957 0.96439 1.16921 1.25635 1.78816 1.19043 1.14283 0.91469 1.47774 1.07871 1.37612 1.11340 0.64260 1.74897 0.94351 1.20058 1.22698 0.92252 0.97847 0.96712 0.74327 0.81771 0.78441 0.78796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 13.29 21.45 0.28 -53.28 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -30.45 9.27 25.60 0.24 -30.22 16 8 H 0.07 3.66 7.65 -2.91 -0.02 3.64 16 9 C 0.26 13.78 5.97 85.63 0.51 14.29 16 10 N -1.09 -49.45 4.84 -190.80 -0.92 -50.38 16 11 S 2.71 111.93 4.91 -56.49 -0.28 111.65 16 12 O -0.99 -44.64 16.47 -128.00 -2.11 -46.75 16 13 O -0.97 -41.77 15.11 -128.00 -1.93 -43.70 16 14 C -0.63 -21.93 5.89 22.47 0.13 -21.80 16 15 C -0.04 -1.13 9.54 22.24 0.21 -0.91 16 16 C -0.07 -1.32 10.04 22.30 0.22 -1.10 16 17 C -0.09 -1.61 10.02 22.28 0.22 -1.39 16 18 C 0.10 2.80 7.28 22.59 0.16 2.97 16 19 F -0.12 -3.23 15.86 44.97 0.71 -2.52 16 20 C 0.02 0.77 5.88 -20.00 -0.12 0.65 16 21 C 0.17 6.07 7.56 137.37 1.04 7.11 16 22 N -0.28 -10.52 5.61 -52.20 -0.29 -10.81 16 23 N -0.04 -1.29 13.47 37.02 0.50 -0.79 16 24 N -0.19 -4.59 7.90 37.02 0.29 -4.30 16 25 H 0.50 5.71 8.96 -347.53 -3.12 2.59 16 26 N -0.27 -7.87 11.13 -52.14 -0.58 -8.45 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.01 0.85 7.77 -2.39 -0.02 0.83 16 30 H 0.42 18.59 6.99 -96.75 -0.68 17.92 16 31 H 0.16 4.11 7.34 -2.91 -0.02 4.09 16 32 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -78.68 307.61 -1.78 -80.46 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -2.57 Total: 12.90 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 3.09 Total: -29.39 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -0.72 Total: -128.01 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: -4.04 Total: -90.45 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.71 Total: -2.52 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 111.93 SS G_CDS: -0.28 Total: 111.65 kcal Total: -78.68 -1.78 -80.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.651 kcal (2) G-P(sol) polarization free energy of solvation -78.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds