Wall clock time and date at job start Tue Mar 31 2020 15:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99806 * 2 1 4 4 H 1.48499 * 109.46564 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46833 * 299.99392 * 3 2 1 6 6 H 1.48492 * 109.47548 * 59.99761 * 3 2 1 7 7 C 1.37874 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00532 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47294 * 179.97438 * 9 7 2 11 11 S 1.65600 * 119.99793 * 164.99840 * 10 9 7 12 12 O 1.42098 * 106.40616 * 311.45684 * 11 10 9 13 13 O 1.42102 * 106.40170 * 178.54022 * 11 10 9 14 14 C 1.76199 * 107.21757 * 65.00179 * 11 10 9 15 15 C 1.38294 * 119.92646 * 89.99965 * 14 11 10 16 16 C 1.38515 * 120.21005 * 179.97438 * 15 14 11 17 17 F 1.35101 * 119.96985 * 179.74740 * 16 15 14 18 18 C 1.38282 * 120.06515 * 0.02562 * 16 15 14 19 19 C 1.39242 * 119.85485 * 0.02562 * 18 16 15 20 20 C 1.48460 * 120.10557 * 180.02562 * 19 18 16 21 21 N 1.34051 * 126.67817 * 179.64398 * 20 19 18 22 22 N 1.28983 * 107.27014 * 179.83579 * 21 20 19 23 23 N 1.28724 * 108.94433 * 0.43372 * 22 21 20 24 24 H 0.97005 * 125.34186 * 179.69412 * 23 22 21 25 25 N 1.28870 * 109.31778 * 359.72166 * 23 22 21 26 26 C 1.38017 * 119.92686 * 270.01706 * 14 11 10 27 27 H 0.97000 * 120.00029 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46861 * 59.99529 * 9 7 2 29 29 H 1.09007 * 109.46902 * 300.00073 * 9 7 2 30 30 H 0.96996 * 120.00120 * 345.00570 * 10 9 7 31 31 H 1.07999 * 119.89982 * 359.97438 * 15 14 11 32 32 H 1.08001 * 120.06842 * 179.97438 * 18 16 15 33 33 H 1.07998 * 120.03342 * 0.02676 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6881 -5.1422 0.3718 12 8 0.9252 -5.0302 1.5653 13 8 2.8237 -5.9880 0.2518 14 6 0.5645 -5.6355 -0.8927 15 6 1.0350 -6.2880 -2.0176 16 6 0.1568 -6.6789 -3.0149 17 9 0.6223 -7.3115 -4.1142 18 6 -1.1952 -6.4172 -2.8892 19 6 -1.6717 -5.7594 -1.7582 20 6 -3.1221 -5.4761 -1.6173 21 7 -3.7216 -4.8611 -0.5880 22 7 -4.9826 -4.8101 -0.8541 23 7 -5.1923 -5.3717 -1.9932 24 1 -6.0580 -5.4686 -2.4201 25 7 -4.0720 -5.7854 -2.4773 26 6 -0.7831 -5.3696 -0.7584 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1349 -3.4540 -0.2168 31 1 2.0904 -6.4935 -2.1188 32 1 -1.8799 -6.7216 -3.6670 33 1 -1.1484 -4.8592 0.1205 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:50 Heat of formation + Delta-G solvation = 32.562291 kcal Electronic energy + Delta-G solvation = -24856.276585 eV Core-core repulsion = 20768.924075 eV Total energy + Delta-G solvation = -4087.352510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.08419 -44.61963 -39.25717 -36.83824 -35.45233 -34.69111 -34.57187 -33.83423 -32.18427 -31.25762 -30.66082 -26.77657 -25.20340 -24.78666 -23.20861 -22.56226 -22.11078 -19.67023 -19.04248 -18.10426 -17.42142 -17.29753 -16.71945 -16.45409 -16.05370 -15.78353 -15.68037 -15.41113 -15.04561 -14.54445 -14.17315 -13.62034 -13.38442 -13.07620 -12.68514 -12.59280 -12.40238 -12.17113 -12.01075 -11.86736 -11.68493 -11.57330 -11.52491 -11.30798 -11.19008 -10.98123 -10.81761 -10.70704 -10.15159 -9.48922 -9.44642 -8.95747 -8.89698 -8.28144 -6.18481 -4.23659 0.24088 0.64062 0.86486 1.01473 2.01581 2.05128 3.16092 3.24430 3.32345 3.34501 3.35760 3.60009 3.78677 4.10153 4.24134 4.33874 4.53398 4.68726 4.76719 4.92984 5.12362 5.18609 5.21643 5.28442 5.60957 5.69925 5.83920 5.94526 6.18547 6.36639 6.48099 7.24238 7.30320 7.73477 7.78571 7.98254 8.14046 8.80355 9.41577 10.91528 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.004692 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.937968 B = 5965.951208 C = 7570.919150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.243 3.757 10 N -1.098 6.098 11 S 2.690 3.310 12 O -0.950 6.950 13 O -0.972 6.972 14 C -0.645 4.645 15 C -0.032 4.032 16 C 0.077 3.923 17 F -0.132 7.132 18 C -0.068 4.068 19 C -0.010 4.010 20 C 0.220 3.780 21 N -0.251 5.251 22 N -0.042 5.042 23 N -0.228 5.228 24 H 0.476 0.524 25 N -0.293 5.293 26 C 0.021 3.979 27 H 0.265 0.735 28 H 0.023 0.977 29 H 0.042 0.958 30 H 0.413 0.587 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 -12.976 -7.370 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.120 3.880 10 N -0.862 5.862 11 S 2.775 3.225 12 O -0.940 6.940 13 O -0.962 6.962 14 C -0.728 4.728 15 C -0.053 4.053 16 C 0.057 3.943 17 F -0.110 7.110 18 C -0.089 4.089 19 C -0.014 4.014 20 C -0.060 4.060 21 N -0.124 5.124 22 N -0.038 5.038 23 N -0.073 5.073 24 H 0.330 0.670 25 N -0.145 5.145 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.248 0.752 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.777 -13.180 -6.360 16.572 hybrid contribution 0.079 0.810 -1.670 1.858 sum -7.697 -12.370 -8.030 16.636 Atomic orbital electron populations 1.69950 1.06011 1.27278 1.49274 1.24970 0.94970 0.99451 0.94771 0.86367 0.79966 0.82944 0.77696 1.19565 1.20937 1.20765 1.21201 0.93503 0.89764 1.52531 0.91464 1.19167 0.87783 0.83520 0.97563 1.55455 1.19726 1.23469 1.87511 1.02095 0.73199 0.73074 0.74087 1.93603 1.72544 1.86265 1.41556 1.93547 1.48978 1.66667 1.87055 1.31352 1.10937 1.12809 1.17706 1.21045 1.01105 0.92721 0.90412 1.17365 0.92051 0.99489 0.85445 1.91538 1.88995 1.79683 1.50793 1.21286 0.94351 0.95776 0.97489 1.16933 0.85835 1.02595 0.96028 1.23371 0.95128 0.98902 0.88636 1.76230 0.97352 1.16429 1.22363 1.78989 1.11863 1.12586 1.00334 1.47722 1.10111 1.36004 1.13500 0.67007 1.74860 0.92343 1.21980 1.25338 1.21115 0.90439 0.90936 0.97548 0.92489 0.95962 0.93960 0.75226 0.82386 0.83077 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -13.81 9.27 -34.44 -0.32 -14.13 16 8 H 0.07 1.67 7.65 -52.48 -0.40 1.27 16 9 C 0.24 5.76 5.98 -5.19 -0.03 5.73 16 10 N -1.10 -20.92 5.99 -11.66 -0.07 -20.99 16 11 S 2.69 46.95 5.73 -107.50 -0.62 46.34 16 12 O -0.95 -19.29 16.75 -57.17 -0.96 -20.25 16 13 O -0.97 -17.41 17.27 -57.17 -0.99 -18.40 16 14 C -0.65 -9.96 5.94 -39.64 -0.24 -10.19 16 15 C -0.03 -0.44 9.49 -39.46 -0.37 -0.81 16 16 C 0.08 0.97 7.29 -39.46 -0.29 0.68 16 17 F -0.13 -1.61 17.26 2.25 0.04 -1.57 16 18 C -0.07 -0.83 9.68 -39.19 -0.38 -1.21 16 19 C -0.01 -0.14 5.87 -104.91 -0.62 -0.75 16 20 C 0.22 3.09 7.94 -156.30 -1.24 1.85 16 21 N -0.25 -3.88 12.23 32.16 0.39 -3.49 16 22 N -0.04 -0.54 13.47 60.35 0.81 0.28 16 23 N -0.23 -2.06 7.90 60.35 0.48 -1.58 16 24 H 0.48 1.74 8.96 -340.37 -3.05 -1.31 16 25 N -0.29 -3.35 12.08 32.17 0.39 -2.96 16 26 C 0.02 0.33 9.17 -39.26 -0.36 -0.03 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 1.09 7.75 -51.93 -0.40 0.68 16 30 H 0.41 7.08 8.54 -34.47 -0.29 6.79 16 31 H 0.16 1.86 7.61 -52.49 -0.40 1.46 16 32 H 0.15 1.50 7.88 -52.49 -0.41 1.09 16 33 H 0.16 2.70 7.44 -52.49 -0.39 2.31 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -33.47 321.21 -8.82 -42.28 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.91 Total: 1.54 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.94 Total: -17.30 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 2.74 Total: -52.96 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.94 Total: -38.65 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 46.95 SS G_CDS: -0.62 Total: 46.34 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.47 -8.82 -42.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.846 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds