Wall clock time and date at job start Tue Mar 31 2020 15:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99806 * 2 1 4 4 H 1.48499 * 109.46564 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46833 * 299.99392 * 3 2 1 6 6 H 1.48492 * 109.47548 * 59.99761 * 3 2 1 7 7 C 1.37874 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00532 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47294 * 179.97438 * 9 7 2 11 11 S 1.65600 * 119.99793 * 164.99840 * 10 9 7 12 12 O 1.42098 * 106.40616 * 311.45684 * 11 10 9 13 13 O 1.42102 * 106.40170 * 178.54022 * 11 10 9 14 14 C 1.76199 * 107.21757 * 65.00179 * 11 10 9 15 15 C 1.38294 * 119.92646 * 89.99965 * 14 11 10 16 16 C 1.38515 * 120.21005 * 179.97438 * 15 14 11 17 17 F 1.35101 * 119.96985 * 179.74740 * 16 15 14 18 18 C 1.38282 * 120.06515 * 0.02562 * 16 15 14 19 19 C 1.39242 * 119.85485 * 0.02562 * 18 16 15 20 20 C 1.48460 * 120.10557 * 180.02562 * 19 18 16 21 21 N 1.34051 * 126.67817 * 179.64398 * 20 19 18 22 22 N 1.28983 * 107.27014 * 179.83579 * 21 20 19 23 23 N 1.28724 * 108.94433 * 0.43372 * 22 21 20 24 24 H 0.97005 * 125.34186 * 179.69412 * 23 22 21 25 25 N 1.28870 * 109.31778 * 359.72166 * 23 22 21 26 26 C 1.38017 * 119.92686 * 270.01706 * 14 11 10 27 27 H 0.97000 * 120.00029 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46861 * 59.99529 * 9 7 2 29 29 H 1.09007 * 109.46902 * 300.00073 * 9 7 2 30 30 H 0.96996 * 120.00120 * 345.00570 * 10 9 7 31 31 H 1.07999 * 119.89982 * 359.97438 * 15 14 11 32 32 H 1.08001 * 120.06842 * 179.97438 * 18 16 15 33 33 H 1.07998 * 120.03342 * 0.02676 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6881 -5.1422 0.3718 12 8 0.9252 -5.0302 1.5653 13 8 2.8237 -5.9880 0.2518 14 6 0.5645 -5.6355 -0.8927 15 6 1.0350 -6.2880 -2.0176 16 6 0.1568 -6.6789 -3.0149 17 9 0.6223 -7.3115 -4.1142 18 6 -1.1952 -6.4172 -2.8892 19 6 -1.6717 -5.7594 -1.7582 20 6 -3.1221 -5.4761 -1.6173 21 7 -3.7216 -4.8611 -0.5880 22 7 -4.9826 -4.8101 -0.8541 23 7 -5.1923 -5.3717 -1.9932 24 1 -6.0580 -5.4686 -2.4201 25 7 -4.0720 -5.7854 -2.4773 26 6 -0.7831 -5.3696 -0.7584 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1349 -3.4540 -0.2168 31 1 2.0904 -6.4935 -2.1188 32 1 -1.8799 -6.7216 -3.6670 33 1 -1.1484 -4.8592 0.1205 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:49 Heat of formation + Delta-G solvation = 6.196843 kcal Electronic energy + Delta-G solvation = -24857.419877 eV Core-core repulsion = 20768.924075 eV Total energy + Delta-G solvation = -4088.495802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.08845 -45.59148 -40.36160 -38.34185 -36.97180 -36.47288 -35.57312 -34.85429 -34.11517 -32.34962 -31.73355 -28.71729 -26.21705 -25.82848 -24.47893 -24.33596 -23.18068 -20.80750 -20.26925 -19.43132 -18.98751 -18.26272 -17.88316 -17.76022 -17.52011 -17.06035 -16.90605 -16.78213 -16.41156 -16.01935 -15.27369 -15.15738 -14.59925 -14.50055 -14.14839 -14.04071 -13.68369 -13.60080 -13.48801 -13.26359 -13.16962 -12.97878 -12.77787 -12.54190 -12.49309 -12.36391 -12.20927 -12.08067 -12.02416 -11.37330 -10.84979 -10.55365 -10.12901 -9.97896 -8.21708 -6.33671 -0.84947 -0.61473 -0.41459 0.04045 0.94431 1.30923 1.46144 1.47975 1.59941 1.96252 2.21127 2.35143 2.44637 2.69096 2.73382 3.13350 3.16915 3.41453 3.57281 3.68885 3.77677 3.96966 4.15843 4.26333 4.49510 4.59346 4.61649 4.72303 4.84671 5.30084 5.33868 5.40772 5.54804 5.77204 5.99658 6.33688 6.80913 6.99547 7.36044 8.89105 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.004692 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.937968 B = 5965.951208 C = 7570.919150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.255 3.745 10 N -1.098 6.098 11 S 2.710 3.290 12 O -0.984 6.984 13 O -0.973 6.973 14 C -0.650 4.650 15 C -0.032 4.032 16 C 0.085 3.915 17 F -0.124 7.124 18 C -0.050 4.050 19 C -0.013 4.013 20 C 0.204 3.796 21 N -0.294 5.294 22 N -0.051 5.051 23 N -0.192 5.192 24 H 0.498 0.502 25 N -0.277 5.277 26 C 0.003 3.997 27 H 0.267 0.733 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.422 0.578 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -13.566 -9.329 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.586 4.586 8 H 0.095 0.905 9 C 0.131 3.869 10 N -0.860 5.860 11 S 2.799 3.201 12 O -0.974 6.974 13 O -0.964 6.964 14 C -0.736 4.736 15 C -0.053 4.053 16 C 0.064 3.936 17 F -0.102 7.102 18 C -0.071 4.071 19 C -0.017 4.017 20 C -0.076 4.076 21 N -0.165 5.165 22 N -0.046 5.046 23 N -0.044 5.044 24 H 0.358 0.642 25 N -0.131 5.131 26 C -0.019 4.019 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.258 0.742 31 H 0.194 0.806 32 H 0.198 0.802 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.602 -13.769 -8.295 17.781 hybrid contribution -0.090 0.862 -1.166 1.453 sum -7.692 -12.907 -9.461 17.756 Atomic orbital electron populations 1.70077 1.07630 1.28197 1.50477 1.25869 0.95761 1.03137 0.94398 0.85313 0.79152 0.78457 0.77559 1.18299 1.20476 1.20787 1.21652 0.94258 0.90795 1.51901 0.90473 1.18731 0.87995 0.84404 0.95791 1.55242 1.19727 1.23257 1.87810 1.01228 0.72897 0.72252 0.73722 1.93559 1.73193 1.86506 1.44143 1.93538 1.49435 1.66125 1.87253 1.30799 1.10162 1.14665 1.18011 1.21247 1.02322 0.91947 0.89774 1.17289 0.92015 0.98994 0.85254 1.91567 1.88928 1.79424 1.50275 1.21523 0.94624 0.93907 0.97036 1.16962 0.85894 1.02753 0.96134 1.23389 0.95501 0.99733 0.89010 1.76218 0.98471 1.17997 1.23849 1.78924 1.11009 1.13262 1.01426 1.47804 1.10699 1.33525 1.12336 0.64231 1.74815 0.92354 1.21397 1.24495 1.21032 0.91046 0.91896 0.97891 0.92416 0.96840 0.96720 0.74212 0.80551 0.80237 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 13.29 21.45 0.28 -52.77 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -28.68 9.27 25.60 0.24 -28.44 16 8 H 0.08 3.79 7.65 -2.91 -0.02 3.77 16 9 C 0.26 12.49 5.98 85.63 0.51 13.00 16 10 N -1.10 -42.44 5.99 -190.79 -1.14 -43.59 16 11 S 2.71 96.14 5.73 -56.49 -0.32 95.82 16 12 O -0.98 -41.69 16.75 -128.00 -2.14 -43.83 16 13 O -0.97 -34.27 17.27 -128.00 -2.21 -36.48 16 14 C -0.65 -20.08 5.94 22.23 0.13 -19.95 16 15 C -0.03 -0.83 9.49 22.35 0.21 -0.61 16 16 C 0.08 1.94 7.29 22.35 0.16 2.11 16 17 F -0.12 -2.64 17.26 44.97 0.78 -1.86 16 18 C -0.05 -1.11 9.68 22.52 0.22 -0.89 16 19 C -0.01 -0.37 5.87 -20.05 -0.12 -0.48 16 20 C 0.20 5.61 7.94 137.38 1.09 6.70 16 21 N -0.29 -9.20 12.23 -52.18 -0.64 -9.84 16 22 N -0.05 -1.27 13.47 37.02 0.50 -0.77 16 23 N -0.19 -3.11 7.90 37.02 0.29 -2.82 16 24 H 0.50 2.37 8.96 -347.54 -3.12 -0.75 16 25 N -0.28 -5.78 12.08 -52.13 -0.63 -6.41 16 26 C 0.00 0.10 9.17 22.48 0.21 0.30 16 27 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.01 0.80 7.75 -2.38 -0.02 0.78 16 30 H 0.42 14.41 8.54 -96.75 -0.83 13.59 16 31 H 0.18 3.78 7.61 -2.91 -0.02 3.76 16 32 H 0.18 2.91 7.88 -2.91 -0.02 2.89 16 33 H 0.14 5.17 7.44 -2.91 -0.02 5.15 16 Total: -1.00 -71.99 321.21 -2.81 -74.80 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -2.72 Total: 11.16 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.12 Total: -27.36 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -1.33 Total: -116.19 kcal Atomic # 8 Polarization: -75.96 SS G_CDS: -4.35 Total: -80.31 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 96.14 SS G_CDS: -0.32 Total: 95.82 kcal Total: -71.99 -2.81 -74.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.995 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds