Wall clock time and date at job start Tue Mar 31 2020 15:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48504 * 109.47585 * 239.99988 * 3 2 1 5 5 H 1.48500 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47307 * 119.99864 * 3 2 1 7 7 C 1.37873 * 120.00553 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00745 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99684 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47110 * 179.97438 * 9 7 2 11 11 S 1.65603 * 120.00095 * 164.99893 * 10 9 7 12 12 O 1.42100 * 106.40057 * 311.45818 * 11 10 9 13 13 O 1.42094 * 106.40174 * 178.54359 * 11 10 9 14 14 C 1.76197 * 107.21750 * 65.00140 * 11 10 9 15 15 C 1.38350 * 119.91292 * 89.99652 * 14 11 10 16 16 C 1.38244 * 120.26127 * 180.02562 * 15 14 11 17 17 C 1.38290 * 120.09414 * 359.97438 * 16 15 14 18 18 F 1.35104 * 120.08877 * 179.97438 * 17 16 15 19 19 C 1.39497 * 119.82662 * 0.24858 * 17 16 15 20 20 C 1.48443 * 120.13043 * 179.72384 * 19 17 16 21 21 N 1.34051 * 126.66996 * 179.68517 * 20 19 17 22 22 N 1.28988 * 107.26400 * 179.89551 * 21 20 19 23 23 N 1.28734 * 108.94692 * 0.37897 * 22 21 20 24 24 H 0.96998 * 125.34315 * 179.75995 * 23 22 21 25 25 N 1.28870 * 109.31819 * 359.76027 * 23 22 21 26 26 C 1.38012 * 119.91312 * 269.98228 * 14 11 10 27 27 H 0.96997 * 120.00598 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47407 * 60.00258 * 9 7 2 29 29 H 1.09000 * 109.47352 * 299.99744 * 9 7 2 30 30 H 0.96997 * 119.99802 * 345.00270 * 10 9 7 31 31 H 1.07999 * 119.87258 * 0.02562 * 15 14 11 32 32 H 1.08005 * 119.95513 * 179.97438 * 16 15 14 33 33 H 1.07996 * 120.04517 * 359.96897 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 16 1.6884 -5.1426 0.3671 12 8 0.9255 -5.0316 1.5608 13 8 2.8240 -5.9881 0.2465 14 6 0.5649 -5.6348 -0.8977 15 6 1.0359 -6.2864 -2.0236 16 6 0.1608 -6.6754 -3.0206 17 6 -1.1917 -6.4149 -2.8967 18 9 -2.0467 -6.7946 -3.8714 19 6 -1.6701 -5.7540 -1.7652 20 6 -3.1198 -5.4655 -1.6280 21 7 -3.7193 -4.8474 -0.6007 22 7 -4.9797 -4.7934 -0.8693 23 7 -5.1888 -5.3550 -2.0086 24 1 -6.0537 -5.4492 -2.4375 25 7 -4.0687 -5.7726 -2.4900 26 6 -0.7828 -5.3696 -0.7626 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5564 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1351 -3.4537 -0.2199 31 1 2.0914 -6.4921 -2.1240 32 1 0.5339 -7.1834 -3.8977 33 1 -1.1483 -4.8615 0.1175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678294.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:45 Heat of formation + Delta-G solvation = 34.514623 kcal Electronic energy + Delta-G solvation = -25020.767236 eV Core-core repulsion = 20933.499385 eV Total energy + Delta-G solvation = -4087.267851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20327 -44.53649 -39.18817 -36.81241 -35.42016 -34.66803 -34.55377 -33.75651 -32.17153 -31.19513 -30.70207 -26.76191 -24.97873 -24.84128 -23.05907 -22.54958 -22.19365 -19.52977 -18.97527 -18.07275 -17.62134 -17.25442 -17.10134 -16.68550 -15.96713 -15.80854 -15.44821 -15.21945 -14.58283 -14.32271 -13.99081 -13.65754 -13.43443 -13.34586 -12.97133 -12.57911 -12.44250 -12.13966 -11.85779 -11.73802 -11.61170 -11.48708 -11.45220 -11.22328 -11.18763 -10.93951 -10.83897 -10.74348 -10.13172 -9.46680 -9.32986 -9.03994 -8.91777 -8.26444 -6.17146 -4.22684 0.28016 0.68136 0.91120 1.08061 2.09104 2.12464 3.15618 3.27114 3.32178 3.33805 3.42551 3.64260 3.77317 4.04244 4.16199 4.34550 4.47463 4.67337 4.80090 5.07978 5.19182 5.26463 5.34176 5.38681 5.59953 5.73053 5.83284 5.92656 6.24723 6.38570 6.46787 7.25380 7.31724 7.75272 7.79355 8.04618 8.15296 8.80838 9.42411 10.92749 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.004585 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.010868 B = 6105.223025 C = 7612.709840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.066 0.934 9 C 0.244 3.756 10 N -1.100 6.100 11 S 2.692 3.308 12 O -0.953 6.953 13 O -0.975 6.975 14 C -0.686 4.686 15 C 0.029 3.971 16 C -0.180 4.180 17 C 0.184 3.816 18 F -0.115 7.115 19 C -0.075 4.075 20 C 0.217 3.783 21 N -0.251 5.251 22 N -0.044 5.044 23 N -0.229 5.229 24 H 0.475 0.525 25 N -0.285 5.285 26 C 0.059 3.941 27 H 0.267 0.733 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.412 0.588 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -13.383 -7.806 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.121 3.879 10 N -0.863 5.863 11 S 2.778 3.222 12 O -0.943 6.943 13 O -0.965 6.965 14 C -0.769 4.769 15 C 0.009 3.991 16 C -0.200 4.200 17 C 0.162 3.838 18 F -0.093 7.093 19 C -0.080 4.080 20 C -0.062 4.062 21 N -0.124 5.124 22 N -0.040 5.040 23 N -0.075 5.075 24 H 0.329 0.671 25 N -0.137 5.137 26 C 0.038 3.962 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.247 0.753 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.472 -13.570 -6.793 16.498 hybrid contribution -0.147 0.872 -1.624 1.849 sum -6.618 -12.698 -8.417 16.610 Atomic orbital electron populations 1.69926 1.06014 1.27508 1.49066 1.24965 0.94961 0.99422 0.94768 0.86483 0.79427 0.82308 0.78749 1.20138 1.21162 1.19971 1.21125 0.93410 0.89810 1.52799 0.91586 1.19143 0.87771 0.83499 0.97507 1.55458 1.19674 1.23553 1.87584 1.01978 0.73175 0.72995 0.74086 1.93596 1.72540 1.86284 1.41899 1.93537 1.49123 1.66686 1.87142 1.31422 1.10705 1.15487 1.19318 1.20960 1.00716 0.88277 0.89112 1.21165 0.90683 1.05857 1.02247 1.17793 0.87893 0.93515 0.84560 1.91584 1.69754 1.88023 1.59967 1.17249 0.86822 1.06935 0.96974 1.23264 0.94956 0.99166 0.88861 1.76209 0.97383 1.16501 1.22355 1.78962 1.11834 1.12762 1.00406 1.47754 1.10215 1.36004 1.13495 0.67067 1.75044 0.92226 1.21515 1.24918 1.20956 0.90186 0.88694 0.96365 0.92369 0.96015 0.94031 0.75316 0.82619 0.83038 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -13.86 9.27 -34.44 -0.32 -14.18 16 8 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 9 C 0.24 5.80 5.98 -5.19 -0.03 5.77 16 10 N -1.10 -20.82 5.99 -11.65 -0.07 -20.89 16 11 S 2.69 46.51 5.73 -107.50 -0.62 45.89 16 12 O -0.95 -19.44 16.74 -57.18 -0.96 -20.40 16 13 O -0.97 -17.08 17.27 -57.18 -0.99 -18.07 16 14 C -0.69 -10.39 5.94 -39.62 -0.24 -10.63 16 15 C 0.03 0.36 9.51 -39.54 -0.38 -0.02 16 16 C -0.18 -2.01 10.02 -39.56 -0.40 -2.40 16 17 C 0.18 2.43 7.28 -39.09 -0.28 2.14 16 18 F -0.12 -1.49 15.84 2.25 0.04 -1.45 16 19 C -0.07 -1.13 5.88 -104.83 -0.62 -1.75 16 20 C 0.22 3.35 7.92 -156.30 -1.24 2.11 16 21 N -0.25 -4.12 12.23 32.15 0.39 -3.73 16 22 N -0.04 -0.60 13.47 60.35 0.81 0.21 16 23 N -0.23 -2.35 7.90 60.35 0.48 -1.87 16 24 H 0.48 2.28 8.96 -340.36 -3.05 -0.77 16 25 N -0.29 -3.74 11.09 32.17 0.36 -3.38 16 26 C 0.06 0.95 9.17 -39.27 -0.36 0.59 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 1.07 7.75 -51.93 -0.40 0.67 16 30 H 0.41 7.00 8.54 -34.47 -0.29 6.70 16 31 H 0.16 1.54 7.60 -52.49 -0.40 1.14 16 32 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.17 2.79 7.44 -52.49 -0.39 2.40 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -34.13 319.30 -8.90 -43.03 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.92 Total: 1.48 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.96 Total: -16.77 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 2.71 Total: -54.02 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.94 Total: -38.47 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.62 Total: 45.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.13 -8.90 -43.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678294.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.544 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds