Wall clock time and date at job start Tue Mar 31 2020 15:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48504 * 109.47585 * 239.99988 * 3 2 1 5 5 H 1.48500 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47307 * 119.99864 * 3 2 1 7 7 C 1.37873 * 120.00553 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00745 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99684 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47110 * 179.97438 * 9 7 2 11 11 S 1.65603 * 120.00095 * 164.99893 * 10 9 7 12 12 O 1.42100 * 106.40057 * 311.45818 * 11 10 9 13 13 O 1.42094 * 106.40174 * 178.54359 * 11 10 9 14 14 C 1.76197 * 107.21750 * 65.00140 * 11 10 9 15 15 C 1.38350 * 119.91292 * 89.99652 * 14 11 10 16 16 C 1.38244 * 120.26127 * 180.02562 * 15 14 11 17 17 C 1.38290 * 120.09414 * 359.97438 * 16 15 14 18 18 F 1.35104 * 120.08877 * 179.97438 * 17 16 15 19 19 C 1.39497 * 119.82662 * 0.24858 * 17 16 15 20 20 C 1.48443 * 120.13043 * 179.72384 * 19 17 16 21 21 N 1.34051 * 126.66996 * 179.68517 * 20 19 17 22 22 N 1.28988 * 107.26400 * 179.89551 * 21 20 19 23 23 N 1.28734 * 108.94692 * 0.37897 * 22 21 20 24 24 H 0.96998 * 125.34315 * 179.75995 * 23 22 21 25 25 N 1.28870 * 109.31819 * 359.76027 * 23 22 21 26 26 C 1.38012 * 119.91312 * 269.98228 * 14 11 10 27 27 H 0.96997 * 120.00598 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47407 * 60.00258 * 9 7 2 29 29 H 1.09000 * 109.47352 * 299.99744 * 9 7 2 30 30 H 0.96997 * 119.99802 * 345.00270 * 10 9 7 31 31 H 1.07999 * 119.87258 * 0.02562 * 15 14 11 32 32 H 1.08005 * 119.95513 * 179.97438 * 16 15 14 33 33 H 1.07996 * 120.04517 * 359.96897 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 16 1.6884 -5.1426 0.3671 12 8 0.9255 -5.0316 1.5608 13 8 2.8240 -5.9881 0.2465 14 6 0.5649 -5.6348 -0.8977 15 6 1.0359 -6.2864 -2.0236 16 6 0.1608 -6.6754 -3.0206 17 6 -1.1917 -6.4149 -2.8967 18 9 -2.0467 -6.7946 -3.8714 19 6 -1.6701 -5.7540 -1.7652 20 6 -3.1198 -5.4655 -1.6280 21 7 -3.7193 -4.8474 -0.6007 22 7 -4.9797 -4.7934 -0.8693 23 7 -5.1888 -5.3550 -2.0086 24 1 -6.0537 -5.4492 -2.4375 25 7 -4.0687 -5.7726 -2.4900 26 6 -0.7828 -5.3696 -0.7626 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5564 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1351 -3.4537 -0.2199 31 1 2.0914 -6.4921 -2.1240 32 1 0.5339 -7.1834 -3.8977 33 1 -1.1483 -4.8615 0.1175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678294.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:44 Heat of formation + Delta-G solvation = 7.294227 kcal Electronic energy + Delta-G solvation = -25021.947601 eV Core-core repulsion = 20933.499385 eV Total energy + Delta-G solvation = -4088.448216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.22500 -45.60310 -40.26543 -38.29525 -36.92156 -36.45026 -35.63102 -34.83591 -34.10412 -32.26464 -31.79077 -28.70501 -26.03061 -25.94307 -24.46939 -24.16651 -23.30453 -20.70829 -20.24349 -19.31425 -19.07194 -18.43369 -18.31578 -17.81594 -17.67243 -17.00893 -16.85864 -16.52706 -16.18199 -15.40989 -15.28740 -14.97807 -14.71803 -14.51244 -14.40049 -14.09240 -13.94496 -13.55245 -13.50700 -13.20705 -13.10611 -12.71042 -12.58737 -12.57362 -12.53924 -12.35942 -12.26013 -12.09824 -12.02708 -11.40959 -10.81858 -10.38195 -10.14227 -10.06386 -8.21049 -6.33526 -0.81063 -0.56022 -0.35216 0.02260 0.98341 1.29107 1.47277 1.49772 1.57327 1.98013 2.26236 2.37378 2.45339 2.71784 2.76629 2.97213 3.14024 3.34735 3.50873 3.74862 4.01196 4.07564 4.25744 4.36112 4.57406 4.63297 4.66939 4.77976 4.83494 5.30748 5.34525 5.44413 5.52527 5.77232 6.00954 6.36356 6.81380 6.96268 7.36307 8.89318 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.004585 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.010868 B = 6105.223025 C = 7612.709840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.078 0.922 9 C 0.257 3.743 10 N -1.099 6.099 11 S 2.711 3.289 12 O -0.992 6.992 13 O -0.972 6.972 14 C -0.691 4.691 15 C 0.034 3.966 16 C -0.158 4.158 17 C 0.186 3.814 18 F -0.111 7.111 19 C -0.089 4.089 20 C 0.201 3.799 21 N -0.293 5.293 22 N -0.051 5.051 23 N -0.194 5.194 24 H 0.497 0.503 25 N -0.280 5.280 26 C 0.039 3.961 27 H 0.267 0.733 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.422 0.578 31 H 0.187 0.813 32 H 0.198 0.802 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -14.230 -10.014 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.132 3.868 10 N -0.861 5.861 11 S 2.801 3.199 12 O -0.982 6.982 13 O -0.962 6.962 14 C -0.779 4.779 15 C 0.014 3.986 16 C -0.177 4.177 17 C 0.164 3.836 18 F -0.089 7.089 19 C -0.094 4.094 20 C -0.079 4.079 21 N -0.165 5.165 22 N -0.045 5.045 23 N -0.046 5.046 24 H 0.357 0.643 25 N -0.133 5.133 26 C 0.018 3.982 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.258 0.742 31 H 0.205 0.795 32 H 0.215 0.785 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.362 -14.415 -8.975 17.808 hybrid contribution -0.594 1.002 -1.031 1.556 sum -5.956 -13.413 -10.007 17.763 Atomic orbital electron populations 1.70069 1.07715 1.28316 1.50422 1.25888 0.95732 1.03219 0.94391 0.85411 0.78105 0.77693 0.79266 1.18778 1.21281 1.19315 1.21605 0.94278 0.90791 1.52027 0.90353 1.18683 0.88004 0.84510 0.95581 1.55236 1.19661 1.23313 1.87876 1.01130 0.72912 0.72181 0.73716 1.93548 1.73285 1.86559 1.44783 1.93532 1.49392 1.66001 1.87298 1.30952 1.09539 1.17355 1.20016 1.21386 1.02498 0.86816 0.87877 1.21609 0.89192 1.04015 1.02858 1.17934 0.88813 0.92974 0.83870 1.91595 1.69906 1.87840 1.59563 1.17353 0.86701 1.07698 0.97621 1.23438 0.95619 0.99745 0.89121 1.76197 0.98454 1.18090 1.23769 1.78882 1.11024 1.13268 1.01371 1.47814 1.10718 1.33631 1.12389 0.64325 1.74990 0.92449 1.21410 1.24452 1.20782 0.91014 0.89983 0.96472 0.92454 0.96999 0.97046 0.74227 0.79535 0.78524 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.69 13.29 21.45 0.28 -53.40 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.55 -28.75 9.27 25.60 0.24 -28.51 16 8 H 0.08 3.81 7.65 -2.91 -0.02 3.79 16 9 C 0.26 12.61 5.98 85.63 0.51 13.13 16 10 N -1.10 -41.95 5.99 -190.77 -1.14 -43.09 16 11 S 2.71 94.38 5.73 -56.49 -0.32 94.06 16 12 O -0.99 -42.32 16.74 -128.00 -2.14 -44.47 16 13 O -0.97 -32.79 17.27 -128.00 -2.21 -35.00 16 14 C -0.69 -20.71 5.94 22.24 0.13 -20.58 16 15 C 0.03 0.74 9.51 22.30 0.21 0.95 16 16 C -0.16 -2.93 10.02 22.28 0.22 -2.70 16 17 C 0.19 4.52 7.28 22.59 0.16 4.69 16 18 F -0.11 -2.58 15.84 44.97 0.71 -1.87 16 19 C -0.09 -2.68 5.88 -20.00 -0.12 -2.80 16 20 C 0.20 6.27 7.92 137.37 1.09 7.36 16 21 N -0.29 -10.00 12.23 -52.19 -0.64 -10.64 16 22 N -0.05 -1.38 13.47 37.02 0.50 -0.89 16 23 N -0.19 -3.80 7.90 37.02 0.29 -3.51 16 24 H 0.50 3.94 8.96 -347.53 -3.12 0.82 16 25 N -0.28 -7.11 11.09 -52.14 -0.58 -7.69 16 26 C 0.04 1.30 9.17 22.47 0.21 1.51 16 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.01 0.63 7.75 -2.39 -0.02 0.61 16 30 H 0.42 14.08 8.54 -96.75 -0.83 13.25 16 31 H 0.19 2.90 7.60 -2.91 -0.02 2.88 16 32 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.14 5.30 7.44 -2.91 -0.02 5.28 16 Total: -1.00 -75.03 319.30 -2.82 -77.85 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -2.72 Total: 10.75 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.12 Total: -26.09 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -1.28 Total: -119.22 kcal Atomic # 8 Polarization: -75.11 SS G_CDS: -4.35 Total: -79.47 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.71 Total: -1.87 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 94.38 SS G_CDS: -0.32 Total: 94.06 kcal Total: -75.03 -2.82 -77.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678294.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.141 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds