Wall clock time and date at job start Tue Mar 31 2020 15:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47014 * 270.00175 * 3 2 1 5 5 H 1.48493 * 109.47190 * 30.00312 * 3 2 1 6 6 H 1.48500 * 109.46943 * 150.00604 * 3 2 1 7 7 C 1.37878 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99811 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99903 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46951 * 180.02562 * 9 7 2 11 11 S 1.65596 * 119.99971 * 165.00072 * 10 9 7 12 12 O 1.42102 * 106.40427 * 311.45527 * 11 10 9 13 13 O 1.42102 * 106.40131 * 178.53477 * 11 10 9 14 14 C 1.76205 * 107.21921 * 64.99432 * 11 10 9 15 15 C 1.38346 * 119.86865 * 269.97698 * 14 11 10 16 16 C 1.38009 * 120.17194 * 179.97438 * 15 14 11 17 17 C 1.39296 * 119.90511 * 0.02617 * 16 15 14 18 18 C 1.48433 * 120.13070 * 179.97438 * 17 16 15 19 19 N 1.34057 * 126.67659 * 359.68892 * 18 17 16 20 20 N 1.28984 * 107.27155 * 179.89444 * 19 18 17 21 21 N 1.28733 * 108.94463 * 0.37086 * 20 19 18 22 22 H 0.97003 * 125.34337 * 179.78526 * 21 20 19 23 23 N 1.28877 * 109.31747 * 359.76243 * 21 20 19 24 24 C 1.39498 * 119.74066 * 359.97438 * 17 16 15 25 25 F 1.35104 * 120.08482 * 180.02562 * 24 17 16 26 26 C 1.38245 * 119.86520 * 89.99996 * 14 11 10 27 27 H 0.97005 * 120.00012 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47468 * 59.99761 * 9 7 2 29 29 H 1.09000 * 109.47246 * 299.99656 * 9 7 2 30 30 H 0.96998 * 120.00036 * 344.99130 * 10 9 7 31 31 H 1.08005 * 119.91665 * 0.02562 * 15 14 11 32 32 H 1.08000 * 120.04676 * 180.02562 * 16 15 14 33 33 H 1.07996 * 119.95869 * 359.70212 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 16 5.5817 -2.8939 -0.3742 12 8 5.8657 -2.1764 -1.5674 13 8 5.7464 -4.3004 -0.2551 14 6 6.5713 -2.1682 0.8903 15 6 7.0158 -0.8652 0.7546 16 6 7.7908 -0.2904 1.7413 17 6 8.1266 -1.0246 2.8765 18 6 8.9603 -0.4115 3.9407 19 7 9.4657 0.8301 3.9463 20 7 10.1250 0.9702 5.0460 21 7 10.0579 -0.1268 5.7162 22 1 10.4728 -0.2837 6.5789 23 7 9.3525 -0.9840 5.0614 24 6 7.6763 -2.3381 3.0094 25 9 7.9974 -3.0563 4.1078 26 6 6.9007 -2.9034 2.0137 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8887 29 1 3.8745 -0.6801 -0.8911 30 1 3.3966 -3.3031 0.2151 31 1 6.7551 -0.2960 -0.1255 32 1 8.1364 0.7271 1.6335 33 1 6.5472 -3.9187 2.1165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:48 Heat of formation + Delta-G solvation = 39.540555 kcal Electronic energy + Delta-G solvation = -24803.815688 eV Core-core repulsion = 20716.765778 eV Total energy + Delta-G solvation = -4087.049910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.13465 -44.84330 -39.31526 -36.99755 -35.61159 -34.90632 -34.82173 -34.04111 -32.27425 -31.34950 -30.77719 -27.47070 -25.38924 -25.12775 -23.03526 -22.32616 -22.10664 -19.68000 -19.49666 -18.36123 -17.61797 -17.54474 -17.00322 -16.59308 -16.23943 -16.03964 -15.83341 -15.54085 -14.61060 -14.52765 -14.18863 -13.78690 -13.49842 -13.21300 -13.00936 -12.86631 -12.66300 -12.53234 -12.15759 -12.03711 -11.84274 -11.79073 -11.72717 -11.49862 -11.46991 -10.98584 -10.90381 -10.66184 -10.04993 -9.59406 -9.47167 -9.08664 -8.98952 -8.60234 -6.23963 -4.26221 -0.08960 0.65481 0.76388 0.83655 1.78665 1.84371 3.02817 3.14805 3.20765 3.26542 3.28363 3.44430 3.63434 3.85801 3.97849 4.26764 4.31231 4.69590 4.74290 4.80843 4.96228 5.05233 5.09429 5.22277 5.49411 5.67725 5.76084 5.78066 5.97654 6.05390 6.38700 6.73972 6.82152 7.30888 7.71074 7.73271 8.30742 8.77387 9.33325 10.88276 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.004083 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.228439 B = 6855.649958 C = 8153.252931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.870 3.130 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.083 0.917 9 C 0.214 3.786 10 N -1.091 6.091 11 S 2.689 3.311 12 O -0.952 6.952 13 O -0.966 6.966 14 C -0.628 4.628 15 C -0.030 4.030 16 C -0.069 4.069 17 C -0.007 4.007 18 C 0.209 3.791 19 N -0.257 5.257 20 N -0.046 5.046 21 N -0.225 5.225 22 H 0.477 0.523 23 N -0.273 5.273 24 C 0.115 3.885 25 F -0.118 7.118 26 C -0.054 4.054 27 H 0.268 0.732 28 H 0.021 0.979 29 H 0.034 0.966 30 H 0.418 0.582 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.340 -1.359 9.667 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.101 0.899 9 C 0.090 3.910 10 N -0.854 5.854 11 S 2.775 3.225 12 O -0.942 6.942 13 O -0.956 6.956 14 C -0.712 4.712 15 C -0.049 4.049 16 C -0.090 4.090 17 C -0.011 4.011 18 C -0.071 4.071 19 N -0.131 5.131 20 N -0.041 5.041 21 N -0.071 5.071 22 H 0.332 0.668 23 N -0.125 5.125 24 C 0.092 3.908 25 F -0.096 7.096 26 C -0.073 4.073 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.254 0.746 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 20.006 -1.054 9.272 22.075 hybrid contribution 0.289 0.505 1.525 1.632 sum 20.295 -0.549 10.797 22.995 Atomic orbital electron populations 1.69871 1.06204 1.27395 1.49293 1.24855 0.94827 0.99053 0.94094 0.86930 0.80523 0.83665 0.79229 1.19450 1.20810 1.18600 1.21012 0.87956 0.95296 1.52943 0.89856 1.19529 0.97934 0.77110 0.96447 1.55235 1.25423 1.17225 1.87517 1.02127 0.73210 0.73132 0.74073 1.93593 1.84550 1.74374 1.41638 1.93567 1.86037 1.29075 1.86934 1.31516 1.16978 1.05734 1.16992 1.21055 0.92630 0.92503 0.98710 1.21239 0.96292 1.00599 0.90894 1.17485 0.98356 0.92401 0.92860 1.23395 1.00730 0.89571 0.93376 1.76105 1.09823 1.15611 1.11530 1.78931 1.16025 1.09124 1.00070 1.47803 1.33316 1.06196 1.19816 0.66804 1.75141 1.10997 1.19551 1.06804 1.17525 0.99037 0.88936 0.85264 1.91581 1.90688 1.76894 1.50418 1.20819 0.95002 1.00888 0.90631 0.92211 0.96115 0.94797 0.74560 0.82350 0.82666 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 19.75 27.47 -169.99 -4.67 15.08 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 7 C -0.53 -13.84 9.83 -34.44 -0.34 -14.18 16 8 H 0.08 2.30 7.90 -52.49 -0.41 1.89 16 9 C 0.21 4.58 5.04 -5.19 -0.03 4.56 16 10 N -1.09 -19.46 5.99 -11.66 -0.07 -19.53 16 11 S 2.69 43.14 5.73 -107.50 -0.62 42.53 16 12 O -0.95 -17.45 16.74 -57.17 -0.96 -18.41 16 13 O -0.97 -16.44 17.27 -57.17 -0.99 -17.42 16 14 C -0.63 -8.76 5.95 -39.54 -0.24 -9.00 16 15 C -0.03 -0.39 9.50 -39.63 -0.38 -0.76 16 16 C -0.07 -0.83 9.70 -39.27 -0.38 -1.21 16 17 C -0.01 -0.08 5.88 -104.83 -0.62 -0.70 16 18 C 0.21 2.59 7.92 -156.30 -1.24 1.35 16 19 N -0.26 -3.15 12.23 32.15 0.39 -2.76 16 20 N -0.05 -0.47 13.47 60.35 0.81 0.34 16 21 N -0.23 -1.73 7.90 60.35 0.48 -1.25 16 22 H 0.48 1.23 8.96 -340.36 -3.05 -1.83 16 23 N -0.27 -2.99 11.09 32.17 0.36 -2.63 16 24 C 0.11 1.49 7.28 -39.09 -0.28 1.20 16 25 F -0.12 -1.52 15.84 2.25 0.04 -1.48 16 26 C -0.05 -0.69 9.49 -39.56 -0.38 -1.07 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.03 0.73 7.18 -51.93 -0.37 0.35 16 30 H 0.42 6.96 8.54 -34.47 -0.29 6.66 16 31 H 0.16 1.87 7.60 -52.48 -0.40 1.47 16 32 H 0.16 1.54 7.89 -52.49 -0.41 1.12 16 33 H 0.16 1.83 7.61 -52.49 -0.40 1.43 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -33.69 315.69 -8.55 -42.24 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.88 Total: 1.29 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -3.97 Total: -17.86 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 2.74 Total: -50.72 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.94 Total: -35.83 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Atomic # 16 Polarization: 43.14 SS G_CDS: -0.62 Total: 42.53 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.69 -8.55 -42.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.779 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds