Wall clock time and date at job start Tue Mar 31 2020 15:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47014 * 270.00175 * 3 2 1 5 5 H 1.48493 * 109.47190 * 30.00312 * 3 2 1 6 6 H 1.48500 * 109.46943 * 150.00604 * 3 2 1 7 7 C 1.37878 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99811 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99903 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46951 * 180.02562 * 9 7 2 11 11 S 1.65596 * 119.99971 * 165.00072 * 10 9 7 12 12 O 1.42102 * 106.40427 * 311.45527 * 11 10 9 13 13 O 1.42102 * 106.40131 * 178.53477 * 11 10 9 14 14 C 1.76205 * 107.21921 * 64.99432 * 11 10 9 15 15 C 1.38346 * 119.86865 * 269.97698 * 14 11 10 16 16 C 1.38009 * 120.17194 * 179.97438 * 15 14 11 17 17 C 1.39296 * 119.90511 * 0.02617 * 16 15 14 18 18 C 1.48433 * 120.13070 * 179.97438 * 17 16 15 19 19 N 1.34057 * 126.67659 * 359.68892 * 18 17 16 20 20 N 1.28984 * 107.27155 * 179.89444 * 19 18 17 21 21 N 1.28733 * 108.94463 * 0.37086 * 20 19 18 22 22 H 0.97003 * 125.34337 * 179.78526 * 21 20 19 23 23 N 1.28877 * 109.31747 * 359.76243 * 21 20 19 24 24 C 1.39498 * 119.74066 * 359.97438 * 17 16 15 25 25 F 1.35104 * 120.08482 * 180.02562 * 24 17 16 26 26 C 1.38245 * 119.86520 * 89.99996 * 14 11 10 27 27 H 0.97005 * 120.00012 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47468 * 59.99761 * 9 7 2 29 29 H 1.09000 * 109.47246 * 299.99656 * 9 7 2 30 30 H 0.96998 * 120.00036 * 344.99130 * 10 9 7 31 31 H 1.08005 * 119.91665 * 0.02562 * 15 14 11 32 32 H 1.08000 * 120.04676 * 180.02562 * 16 15 14 33 33 H 1.07996 * 119.95869 * 359.70212 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 16 5.5817 -2.8939 -0.3742 12 8 5.8657 -2.1764 -1.5674 13 8 5.7464 -4.3004 -0.2551 14 6 6.5713 -2.1682 0.8903 15 6 7.0158 -0.8652 0.7546 16 6 7.7908 -0.2904 1.7413 17 6 8.1266 -1.0246 2.8765 18 6 8.9603 -0.4115 3.9407 19 7 9.4657 0.8301 3.9463 20 7 10.1250 0.9702 5.0460 21 7 10.0579 -0.1268 5.7162 22 1 10.4728 -0.2837 6.5789 23 7 9.3525 -0.9840 5.0614 24 6 7.6763 -2.3381 3.0094 25 9 7.9974 -3.0563 4.1078 26 6 6.9007 -2.9034 2.0137 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8887 29 1 3.8745 -0.6801 -0.8911 30 1 3.3966 -3.3031 0.2151 31 1 6.7551 -0.2960 -0.1255 32 1 8.1364 0.7271 1.6335 33 1 6.5472 -3.9187 2.1165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:47 Heat of formation + Delta-G solvation = 12.505315 kcal Electronic energy + Delta-G solvation = -24804.988024 eV Core-core repulsion = 20716.765778 eV Total energy + Delta-G solvation = -4088.222246 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.11263 -45.64269 -40.28968 -38.35698 -36.97461 -36.51262 -35.67144 -34.89824 -34.20206 -32.28853 -31.74026 -29.30335 -26.32180 -25.95588 -24.08118 -23.83714 -23.24353 -20.82879 -20.38279 -19.68028 -19.06563 -18.34395 -18.04466 -17.85213 -17.61949 -17.17935 -16.97151 -16.80367 -16.19627 -15.40161 -15.27283 -15.08251 -14.77593 -14.68144 -14.40942 -14.00164 -13.90747 -13.71128 -13.52290 -13.25673 -13.17559 -12.93317 -12.70649 -12.61088 -12.43696 -12.33111 -12.31641 -12.02240 -11.81709 -11.57938 -10.84810 -10.42567 -10.25675 -10.06205 -8.28149 -6.35241 -1.08366 -0.61366 -0.12728 -0.02649 0.86529 1.24414 1.44462 1.45930 1.54371 1.95159 2.21269 2.33160 2.38472 2.68521 2.74089 2.92569 3.07543 3.28271 3.65384 3.78174 3.87662 3.96367 4.20658 4.26689 4.45047 4.53154 4.74349 4.81200 4.83874 5.06464 5.12215 5.41598 5.45635 5.47945 6.20422 6.28726 6.71855 6.92279 7.28437 8.87351 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.004083 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.228439 B = 6855.649958 C = 8153.252931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.929 3.071 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.227 1.227 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.218 3.782 10 N -1.097 6.097 11 S 2.711 3.289 12 O -0.975 6.975 13 O -0.977 6.977 14 C -0.634 4.634 15 C -0.034 4.034 16 C -0.064 4.064 17 C -0.005 4.005 18 C 0.193 3.807 19 N -0.275 5.275 20 N -0.047 5.047 21 N -0.195 5.195 22 H 0.497 0.503 23 N -0.280 5.280 24 C 0.108 3.892 25 F -0.119 7.119 26 C -0.055 4.055 27 H 0.269 0.731 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.421 0.579 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.861 -0.169 10.746 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.751 3.249 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.150 1.150 7 C -0.579 4.579 8 H 0.067 0.933 9 C 0.093 3.907 10 N -0.859 5.859 11 S 2.800 3.200 12 O -0.965 6.965 13 O -0.967 6.967 14 C -0.722 4.722 15 C -0.053 4.053 16 C -0.084 4.084 17 C -0.010 4.010 18 C -0.086 4.086 19 N -0.147 5.147 20 N -0.042 5.042 21 N -0.046 5.046 22 H 0.357 0.643 23 N -0.133 5.133 24 C 0.086 3.914 25 F -0.097 7.097 26 C -0.074 4.074 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.257 0.743 31 H 0.189 0.811 32 H 0.194 0.806 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 22.536 0.101 10.345 24.797 hybrid contribution -0.410 0.044 1.311 1.374 sum 22.125 0.145 11.656 25.008 Atomic orbital electron populations 1.70028 1.08274 1.28438 1.51424 1.25807 0.95601 1.03250 0.93785 0.85978 0.80545 0.78476 0.79881 1.18771 1.21014 1.14952 1.21349 0.90625 0.94097 1.51849 0.93262 1.19349 0.94836 0.79099 0.97440 1.55159 1.26720 1.16083 1.87919 1.01248 0.72378 0.72591 0.73800 1.93559 1.84637 1.74738 1.43535 1.93550 1.85959 1.29969 1.87257 1.31047 1.17859 1.06548 1.16739 1.21299 0.92481 0.92103 0.99389 1.21439 0.95521 1.01375 0.90081 1.17660 0.97855 0.92280 0.93188 1.23386 1.01496 0.89910 0.93846 1.76088 1.10488 1.15728 1.12418 1.78878 1.15857 1.09589 0.99890 1.47855 1.31714 1.05022 1.20032 0.64325 1.75101 1.11299 1.20151 1.06726 1.17550 0.99384 0.89202 0.85299 1.91575 1.90734 1.76974 1.50449 1.20942 0.94805 1.01404 0.90294 0.92221 0.94171 0.94190 0.74275 0.81116 0.80567 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.64 13.96 21.45 0.30 -55.34 16 2 C 0.01 0.79 5.47 84.65 0.46 1.26 16 3 Si 0.93 39.48 27.47 68.60 1.88 41.37 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.23 -8.31 6.54 99.48 0.65 -7.66 16 7 C -0.54 -28.32 9.83 25.60 0.25 -28.06 16 8 H 0.05 2.83 7.90 -2.91 -0.02 2.81 16 9 C 0.22 9.03 5.04 85.63 0.43 9.46 16 10 N -1.10 -38.35 5.99 -190.80 -1.14 -39.49 16 11 S 2.71 83.62 5.73 -56.49 -0.32 83.30 16 12 O -0.97 -34.41 16.74 -128.00 -2.14 -36.55 16 13 O -0.98 -32.31 17.27 -128.00 -2.21 -34.52 16 14 C -0.63 -16.43 5.95 22.30 0.13 -16.30 16 15 C -0.03 -0.78 9.50 22.24 0.21 -0.57 16 16 C -0.06 -1.33 9.70 22.47 0.22 -1.11 16 17 C -0.01 -0.13 5.88 -20.00 -0.12 -0.24 16 18 C 0.19 4.34 7.92 137.37 1.09 5.43 16 19 N -0.27 -6.06 12.23 -52.19 -0.64 -6.70 16 20 N -0.05 -0.84 13.47 37.02 0.50 -0.34 16 21 N -0.19 -2.48 7.90 37.02 0.29 -2.19 16 22 H 0.50 1.13 8.96 -347.53 -3.12 -1.99 16 23 N -0.28 -5.45 11.09 -52.14 -0.58 -6.03 16 24 C 0.11 2.59 7.28 22.59 0.16 2.76 16 25 F -0.12 -2.87 15.84 44.97 0.71 -2.16 16 26 C -0.05 -1.32 9.49 22.28 0.21 -1.11 16 27 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 28 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 29 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 30 H 0.42 14.08 8.54 -96.75 -0.83 13.25 16 31 H 0.17 3.50 7.60 -2.91 -0.02 3.47 16 32 H 0.18 2.90 7.89 -2.91 -0.02 2.87 16 33 H 0.17 3.64 7.61 -2.91 -0.02 3.62 16 Total: -1.00 -72.06 315.69 -3.07 -75.12 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -2.77 Total: 12.03 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 3.06 Total: -28.49 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -1.27 Total: -110.10 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -4.35 Total: -71.07 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.71 Total: -2.16 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.88 Total: 41.37 kcal Atomic # 16 Polarization: 83.62 SS G_CDS: -0.32 Total: 83.30 kcal Total: -72.06 -3.07 -75.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.630 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds