Wall clock time and date at job start Tue Mar 31 2020 14:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 99.99802 * 2 1 4 4 C 1.36505 * 125.10954 * 180.02562 * 3 2 1 5 5 C 1.36641 * 114.85593 * 179.97438 * 4 3 2 6 6 C 1.37298 * 114.60810 * 359.97438 * 5 4 3 7 7 C 1.40742 * 125.21158 * 179.97438 * 6 5 4 8 8 C 1.36346 * 120.00316 * 179.97438 * 7 6 5 9 9 C 1.40784 * 120.00051 * 179.97438 * 8 7 6 10 10 O 1.21925 * 120.00052 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99667 * 180.02562 * 9 8 7 12 12 C 1.36838 * 119.99484 * 180.02562 * 11 9 8 13 13 H 1.07996 * 119.99659 * 343.47336 * 12 11 9 14 14 C 1.38956 * 119.99504 * 163.47868 * 12 11 9 15 15 N 1.31432 * 120.00512 * 338.78103 * 14 12 11 16 16 Si 1.86806 * 119.99627 * 158.78733 * 14 12 11 17 17 H 1.48501 * 109.47161 * 59.99616 * 16 14 12 18 18 H 1.48499 * 109.46934 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47319 * 299.99668 * 16 14 12 20 20 C 1.46494 * 120.00398 * 0.02562 * 11 9 8 21 21 C 1.50695 * 109.47448 * 276.03049 * 20 11 9 22 22 O 1.20828 * 119.99962 * 359.97438 * 21 20 11 23 23 O 1.34229 * 120.00013 * 180.02562 * 21 20 11 24 24 S 1.75822 * 125.10700 * 0.24984 * 3 2 1 25 25 H 1.08998 * 109.46862 * 60.00434 * 1 2 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47266 * 300.00396 * 1 2 3 28 28 H 1.08003 * 122.56877 * 359.95272 * 4 3 2 29 29 H 1.07998 * 122.69765 * 179.97438 * 5 4 3 30 30 H 1.08008 * 119.99834 * 0.02562 * 7 6 5 31 31 H 1.07996 * 120.00363 * 0.02562 * 8 7 6 32 32 H 0.97001 * 120.00318 * 179.97438 * 15 14 12 33 33 H 1.09008 * 109.46929 * 36.03001 * 20 11 9 34 34 H 1.09001 * 109.47051 * 156.02323 * 20 11 9 35 35 H 0.96706 * 116.99927 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.3520 2.3146 -0.0005 5 6 3.3459 3.6810 -0.0009 6 6 2.0951 4.2471 -0.0014 7 6 1.8299 5.6293 -0.0014 8 6 0.5418 6.0765 -0.0023 9 6 0.2767 7.4591 -0.0018 10 8 1.1988 8.2567 -0.0009 11 7 -0.9966 7.9010 -0.0022 12 6 -1.2543 9.2449 -0.0022 13 1 -0.4754 9.9440 0.2642 14 6 -2.5181 9.7099 -0.3449 15 7 -3.3270 8.9537 -1.0529 16 14 -3.0673 11.4100 0.2007 17 1 -2.1455 12.4312 -0.3584 18 1 -4.4453 11.6662 -0.2900 19 1 -3.0477 11.4845 1.6836 20 6 -2.1046 6.9427 -0.0027 21 6 -2.3864 6.5013 -1.4158 22 8 -1.7294 6.9424 -2.3289 23 8 -3.3680 5.6189 -1.6601 24 16 0.8750 2.9808 0.0063 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.2647 1.7371 -0.0002 29 1 4.2521 4.2684 -0.0010 30 1 2.6468 6.3359 -0.0014 31 1 -0.2750 5.3701 -0.0027 32 1 -4.2094 9.2782 -1.2918 33 1 -1.8359 6.0764 0.6018 34 1 -2.9938 7.4152 0.4146 35 1 -3.5116 5.3662 -2.5825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599811886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:51 Heat of formation + Delta-G solvation = -56.850433 kcal Electronic energy + Delta-G solvation = -22757.256552 eV Core-core repulsion = 19167.654488 eV Total energy + Delta-G solvation = -3589.602063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.66458 -38.42659 -37.59170 -35.43422 -34.71204 -33.39979 -31.97114 -29.57227 -28.65992 -27.81407 -25.75535 -24.26231 -21.94136 -21.13380 -19.92684 -18.64386 -17.61693 -17.30012 -17.00402 -16.38610 -15.98579 -15.72297 -15.15576 -14.76469 -14.59540 -14.25698 -14.20164 -13.75144 -13.51198 -13.19717 -13.11846 -13.06545 -12.25255 -12.18253 -12.15318 -11.96812 -11.73734 -11.63754 -11.07523 -10.87543 -10.60957 -10.58112 -10.49634 -10.48044 -10.42234 -9.76928 -9.21232 -8.70110 -8.63262 -8.48664 -8.09348 -7.16033 -6.69648 -3.99168 0.23110 1.25867 1.27961 1.92664 1.96103 2.30129 2.95176 3.12487 3.13055 3.17236 3.36187 3.74405 4.01623 4.34094 4.64668 4.77153 4.78893 4.98449 5.13137 5.34691 5.39140 5.42946 5.47870 5.74396 5.84168 6.00995 6.24645 6.29762 6.35670 6.41119 6.71761 6.76319 7.30656 7.38756 7.84680 8.19503 8.89349 8.92101 9.10082 9.73667 10.37255 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.003362 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.040573 B = 8326.940790 C = 9306.942944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.052 6.052 3 C -0.233 4.233 4 C -0.104 4.104 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.054 4.054 8 C -0.160 4.160 9 C 0.470 3.530 10 O -0.588 6.588 11 N -0.412 5.412 12 C -0.288 4.288 13 H 0.115 0.885 14 C 0.027 3.973 15 N -0.866 5.866 16 Si 0.936 3.064 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.139 3.861 21 C 0.488 3.512 22 O -0.499 6.499 23 O -0.533 6.533 24 S 0.146 5.854 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.277 0.723 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 -16.373 3.076 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.186 5.814 3 C -0.462 4.462 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.255 4.255 7 C -0.078 4.078 8 C -0.185 4.185 9 C 0.265 3.735 10 O -0.475 6.475 11 N -0.128 5.128 12 C -0.416 4.416 13 H 0.132 0.868 14 C -0.178 4.178 15 N -0.504 5.504 16 Si 0.762 3.238 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.195 1.195 20 C 0.012 3.988 21 C 0.327 3.673 22 O -0.384 6.384 23 O -0.344 6.344 24 S 0.409 5.591 25 H 0.107 0.893 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.159 0.841 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.599 -16.768 3.157 17.138 hybrid contribution -0.094 1.681 -0.742 1.840 sum 1.506 -15.088 2.415 15.354 Atomic orbital electron populations 1.23732 0.95283 1.07443 1.06535 1.85225 1.05989 0.97535 1.92669 1.26713 1.00723 1.00944 1.17829 1.19903 0.96018 0.94163 1.03939 1.20567 0.97046 0.93862 1.04075 1.22438 0.95888 0.97013 1.10176 1.20428 0.97891 0.90944 0.98493 1.22292 0.96404 0.96880 1.02912 1.16388 0.83289 0.88283 0.85498 1.90706 1.42898 1.57303 1.56603 1.43582 1.03134 1.06137 1.59962 1.19885 0.97744 0.81936 1.42062 0.86760 1.25407 0.96552 1.00755 0.95059 1.69807 1.09791 1.39086 1.31740 0.85816 0.77723 0.80963 0.79317 1.19453 1.20742 1.19468 1.20802 0.94767 0.93137 0.90064 1.23716 0.75966 0.74083 0.93494 1.90637 1.49194 1.52128 1.46393 1.84510 1.54786 1.59765 1.35386 1.84134 1.08213 0.94697 1.72018 0.89306 0.87089 0.89313 0.84149 0.83548 0.83693 0.87692 0.91266 0.90151 0.85120 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.47 101.05 0.96 -0.32 16 2 S -0.05 -0.53 22.88 -107.50 -2.46 -2.99 16 3 C -0.23 -2.93 6.71 30.11 0.20 -2.72 16 4 C -0.10 -1.28 10.15 -40.78 -0.41 -1.70 16 5 C -0.12 -1.66 10.12 -40.50 -0.41 -2.07 16 6 C -0.13 -2.08 6.18 -38.98 -0.24 -2.32 16 7 C -0.05 -0.97 9.34 -39.32 -0.37 -1.34 16 8 C -0.16 -3.26 8.42 -39.30 -0.33 -3.59 16 9 C 0.47 11.75 7.16 -15.30 -0.11 11.64 16 10 O -0.59 -16.50 15.74 4.99 0.08 -16.42 16 11 N -0.41 -10.32 2.17 -119.61 -0.26 -10.58 16 12 C -0.29 -7.72 9.34 -15.05 -0.14 -7.86 16 13 H 0.11 3.19 7.36 -52.49 -0.39 2.80 16 14 C 0.03 0.67 4.88 -17.46 -0.09 0.59 16 15 N -0.87 -21.77 9.26 55.50 0.51 -21.25 16 16 Si 0.94 19.57 29.60 -169.99 -5.03 14.54 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 C 0.14 2.96 4.83 -5.20 -0.03 2.93 16 21 C 0.49 10.61 6.18 36.00 0.22 10.83 16 22 O -0.50 -12.90 16.80 -18.75 -0.31 -13.21 16 23 O -0.53 -9.24 13.42 -39.26 -0.53 -9.76 16 24 S 0.15 1.98 20.38 -107.50 -2.19 -0.21 16 25 H 0.09 0.72 8.00 -51.92 -0.42 0.31 16 26 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.09 0.70 7.99 -51.92 -0.41 0.28 16 28 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.15 2.69 7.46 -52.48 -0.39 2.30 16 31 H 0.11 1.92 5.02 -52.49 -0.26 1.65 16 32 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.08 1.41 6.44 -51.92 -0.33 1.08 16 34 H 0.13 2.83 6.34 -51.93 -0.33 2.50 16 35 H 0.39 5.21 9.10 45.56 0.41 5.62 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -32.90 334.63 -8.41 -41.31 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -2.52 Total: 9.46 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.74 Total: 4.08 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.25 Total: -31.84 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.76 Total: -39.39 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -4.65 Total: -3.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.90 -8.41 -41.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599811886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.536 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds