Wall clock time and date at job start Tue Mar 31 2020 14:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 99.99802 * 2 1 4 4 C 1.36505 * 125.10954 * 180.02562 * 3 2 1 5 5 C 1.36641 * 114.85593 * 179.97438 * 4 3 2 6 6 C 1.37298 * 114.60810 * 359.97438 * 5 4 3 7 7 C 1.40742 * 125.21158 * 179.97438 * 6 5 4 8 8 C 1.36346 * 120.00316 * 179.97438 * 7 6 5 9 9 C 1.40784 * 120.00051 * 179.97438 * 8 7 6 10 10 O 1.21925 * 120.00052 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99667 * 180.02562 * 9 8 7 12 12 C 1.36838 * 119.99484 * 180.02562 * 11 9 8 13 13 H 1.07996 * 119.99659 * 343.47336 * 12 11 9 14 14 C 1.38956 * 119.99504 * 163.47868 * 12 11 9 15 15 N 1.31432 * 120.00512 * 338.78103 * 14 12 11 16 16 Si 1.86806 * 119.99627 * 158.78733 * 14 12 11 17 17 H 1.48501 * 109.47161 * 59.99616 * 16 14 12 18 18 H 1.48499 * 109.46934 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47319 * 299.99668 * 16 14 12 20 20 C 1.46494 * 120.00398 * 0.02562 * 11 9 8 21 21 C 1.50695 * 109.47448 * 276.03049 * 20 11 9 22 22 O 1.20828 * 119.99962 * 359.97438 * 21 20 11 23 23 O 1.34229 * 120.00013 * 180.02562 * 21 20 11 24 24 S 1.75822 * 125.10700 * 0.24984 * 3 2 1 25 25 H 1.08998 * 109.46862 * 60.00434 * 1 2 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47266 * 300.00396 * 1 2 3 28 28 H 1.08003 * 122.56877 * 359.95272 * 4 3 2 29 29 H 1.07998 * 122.69765 * 179.97438 * 5 4 3 30 30 H 1.08008 * 119.99834 * 0.02562 * 7 6 5 31 31 H 1.07996 * 120.00363 * 0.02562 * 8 7 6 32 32 H 0.97001 * 120.00318 * 179.97438 * 15 14 12 33 33 H 1.09008 * 109.46929 * 36.03001 * 20 11 9 34 34 H 1.09001 * 109.47051 * 156.02323 * 20 11 9 35 35 H 0.96706 * 116.99927 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.3520 2.3146 -0.0005 5 6 3.3459 3.6810 -0.0009 6 6 2.0951 4.2471 -0.0014 7 6 1.8299 5.6293 -0.0014 8 6 0.5418 6.0765 -0.0023 9 6 0.2767 7.4591 -0.0018 10 8 1.1988 8.2567 -0.0009 11 7 -0.9966 7.9010 -0.0022 12 6 -1.2543 9.2449 -0.0022 13 1 -0.4754 9.9440 0.2642 14 6 -2.5181 9.7099 -0.3449 15 7 -3.3270 8.9537 -1.0529 16 14 -3.0673 11.4100 0.2007 17 1 -2.1455 12.4312 -0.3584 18 1 -4.4453 11.6662 -0.2900 19 1 -3.0477 11.4845 1.6836 20 6 -2.1046 6.9427 -0.0027 21 6 -2.3864 6.5013 -1.4158 22 8 -1.7294 6.9424 -2.3289 23 8 -3.3680 5.6189 -1.6601 24 16 0.8750 2.9808 0.0063 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.2647 1.7371 -0.0002 29 1 4.2521 4.2684 -0.0010 30 1 2.6468 6.3359 -0.0014 31 1 -0.2750 5.3701 -0.0027 32 1 -4.2094 9.2782 -1.2918 33 1 -1.8359 6.0764 0.6018 34 1 -2.9938 7.4152 0.4146 35 1 -3.5116 5.3662 -2.5825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599811886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:51 Heat of formation + Delta-G solvation = -77.829437 kcal Electronic energy + Delta-G solvation = -22758.166269 eV Core-core repulsion = 19167.654488 eV Total energy + Delta-G solvation = -3590.511781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38945 -40.13956 -38.75219 -37.13201 -36.44844 -34.88830 -33.79876 -30.44232 -29.85696 -29.45103 -27.32733 -25.66545 -23.39935 -22.73773 -21.05891 -20.19181 -19.09983 -18.95917 -18.67214 -17.85689 -17.44937 -17.13044 -16.49495 -16.26415 -16.11758 -15.87605 -15.32078 -14.95715 -14.84322 -14.54851 -14.28973 -14.09990 -13.81296 -13.65209 -13.52434 -13.28502 -13.16909 -13.05618 -12.67092 -12.46463 -12.21323 -12.15271 -12.00992 -11.75753 -11.56144 -11.37810 -11.01899 -10.58138 -9.98292 -9.81037 -9.60393 -8.53187 -8.19134 -5.96997 -0.98804 0.20870 0.38780 0.67273 0.86439 1.40937 1.42720 1.43463 1.53198 1.65980 1.79230 2.14979 2.34596 2.58187 2.95393 3.19001 3.83930 3.94903 4.16697 4.20280 4.21733 4.23700 4.37431 4.48720 4.66529 4.80948 4.83460 4.84627 5.02866 5.15923 5.32942 5.38656 5.44639 5.89640 5.98596 6.34507 7.03352 7.21232 7.38917 7.88311 8.53121 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.003362 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.040573 B = 8326.940790 C = 9306.942944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S -0.037 6.037 3 C -0.214 4.214 4 C -0.125 4.125 5 C -0.082 4.082 6 C -0.200 4.200 7 C 0.001 3.999 8 C -0.212 4.212 9 C 0.469 3.531 10 O -0.637 6.637 11 N -0.429 5.429 12 C -0.339 4.339 13 H 0.084 0.916 14 C 0.001 3.999 15 N -0.885 5.885 16 Si 0.998 3.002 17 H -0.280 1.280 18 H -0.269 1.269 19 H -0.260 1.260 20 C 0.138 3.862 21 C 0.497 3.503 22 O -0.547 6.547 23 O -0.515 6.515 24 S 0.161 5.839 25 H 0.089 0.911 26 H 0.138 0.862 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.279 0.721 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -20.042 3.473 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.202 5.798 3 C -0.444 4.444 4 C -0.161 4.161 5 C -0.115 4.115 6 C -0.320 4.320 7 C -0.022 4.022 8 C -0.235 4.235 9 C 0.265 3.735 10 O -0.528 6.528 11 N -0.146 5.146 12 C -0.466 4.466 13 H 0.101 0.899 14 C -0.202 4.202 15 N -0.523 5.523 16 Si 0.820 3.180 17 H -0.206 1.206 18 H -0.194 1.194 19 H -0.184 1.184 20 C 0.013 3.987 21 C 0.339 3.661 22 O -0.435 6.435 23 O -0.328 6.328 24 S 0.424 5.576 25 H 0.108 0.892 26 H 0.156 0.844 27 H 0.111 0.889 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.640 -20.504 3.556 20.875 hybrid contribution 0.164 2.221 -0.881 2.395 sum 1.804 -18.283 2.675 18.566 Atomic orbital electron populations 1.23911 0.93253 1.09380 1.06774 1.85333 1.08221 0.94868 1.91360 1.27320 1.00798 1.02552 1.13778 1.20208 0.97071 0.93859 1.04966 1.20978 0.96980 0.94668 0.98830 1.22310 0.97656 0.96187 1.15897 1.20514 0.96744 0.92436 0.92530 1.21944 0.97852 0.94548 1.09165 1.17104 0.82889 0.89841 0.83623 1.90636 1.44377 1.59110 1.58702 1.43593 1.03959 1.06135 1.60879 1.19716 0.98215 0.82901 1.45810 0.89863 1.26090 0.95838 1.04020 0.94262 1.69872 1.09931 1.40369 1.32098 0.84932 0.77274 0.76475 0.79270 1.20607 1.19380 1.18434 1.20916 0.93639 0.93599 0.90561 1.23708 0.75696 0.73657 0.93074 1.90617 1.51091 1.54145 1.47682 1.84438 1.52831 1.58251 1.37248 1.84078 1.07886 0.94183 1.71419 0.89208 0.84382 0.88919 0.81464 0.81543 0.84836 0.85876 0.91054 0.86619 0.85699 0.72583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.47 113.37 1.07 -0.87 16 2 S -0.04 -0.60 22.88 -56.49 -1.29 -1.90 16 3 C -0.21 -4.59 6.71 67.41 0.45 -4.14 16 4 C -0.12 -2.59 10.15 21.49 0.22 -2.37 16 5 C -0.08 -1.94 10.12 21.67 0.22 -1.72 16 6 C -0.20 -5.83 6.18 22.66 0.14 -5.69 16 7 C 0.00 0.04 9.34 22.44 0.21 0.25 16 8 C -0.21 -8.82 8.42 22.45 0.19 -8.63 16 9 C 0.47 24.78 7.16 84.86 0.61 25.38 16 10 O -0.64 -38.28 15.74 -5.07 -0.08 -38.36 16 11 N -0.43 -22.71 2.17 -650.46 -1.41 -24.12 16 12 C -0.34 -19.34 9.34 84.08 0.78 -18.56 16 13 H 0.08 5.09 7.36 -2.91 -0.02 5.07 16 14 C 0.00 0.03 4.88 84.92 0.41 0.44 16 15 N -0.88 -45.58 9.26 21.67 0.20 -45.38 16 16 Si 1.00 41.49 29.60 68.60 2.03 43.52 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 C 0.14 6.04 4.83 85.63 0.41 6.45 16 21 C 0.50 21.81 6.18 71.23 0.44 22.25 16 22 O -0.55 -29.06 16.80 21.96 0.37 -28.69 16 23 O -0.52 -17.19 13.42 -51.41 -0.69 -17.88 16 24 S 0.16 3.96 20.38 -56.49 -1.15 2.81 16 25 H 0.09 1.12 8.00 -2.40 -0.02 1.10 16 26 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 1.10 7.99 -2.40 -0.02 1.08 16 28 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.13 5.08 7.46 -2.91 -0.02 5.06 16 31 H 0.12 4.52 5.02 -2.91 -0.01 4.50 16 32 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.12 4.06 6.44 -2.38 -0.02 4.05 16 34 H 0.13 5.55 6.34 -2.39 -0.02 5.54 16 35 H 0.41 10.26 9.10 -74.05 -0.67 9.59 16 Total: -1.00 -76.15 334.63 3.62 -72.53 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.48 Total: 24.67 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.16 Total: 12.80 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.21 Total: -69.50 kcal Atomic # 8 Polarization: -84.53 SS G_CDS: -0.40 Total: -84.93 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.44 Total: 0.91 kcal Total: -76.15 3.62 -72.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599811886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.301 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds