Wall clock time and date at job start Tue Mar 31 2020 14:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76204 * 102.99771 * 2 1 4 4 C 1.39028 * 120.11864 * 0.02562 * 3 2 1 5 5 C 1.37840 * 120.14422 * 179.97438 * 4 3 2 6 6 C 1.39219 * 120.38321 * 0.02562 * 5 4 3 7 7 N 1.40166 * 119.88036 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99990 * 213.31916 * 7 6 5 9 9 O 1.21297 * 119.99741 * 5.27979 * 8 7 6 10 10 C 1.50697 * 120.00127 * 185.27474 * 8 7 6 11 11 S 1.80998 * 109.47268 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00365 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99371 * 0.02562 * 12 11 10 14 14 C 1.38793 * 119.99970 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00539 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46903 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46969 * 120.00450 * 16 14 12 19 19 H 1.48506 * 109.47320 * 240.00496 * 16 14 12 20 20 C 1.38290 * 120.23157 * 359.72116 * 6 5 4 21 21 C 1.39804 * 119.85080 * 0.55152 * 20 6 5 22 22 C 1.47250 * 120.18518 * 179.72520 * 21 20 6 23 23 O 1.21525 * 119.99840 * 179.44886 * 22 21 20 24 24 O 1.34779 * 120.00007 * 359.72330 * 22 21 20 25 25 H 1.09000 * 109.46981 * 60.00553 * 1 2 3 26 26 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47548 * 300.00197 * 1 2 3 28 28 H 1.07997 * 119.92895 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.81367 * 180.02562 * 5 4 3 30 30 H 0.97004 * 120.00340 * 33.32993 * 7 6 5 31 31 H 1.08995 * 109.47503 * 300.00251 * 10 8 7 32 32 H 1.09008 * 109.47156 * 60.00437 * 10 8 7 33 33 H 0.96994 * 120.00835 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.07118 * 180.30151 * 20 6 5 35 35 H 0.96703 * 117.00015 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1954 2.6671 0.0005 5 6 1.5048 4.0104 0.0011 6 6 2.8332 4.4269 0.0005 7 7 3.1359 5.7955 0.0005 8 6 4.2334 6.2430 -0.6410 9 8 4.9064 5.4769 -1.2980 10 6 4.6244 7.6950 -0.5423 11 16 6.1296 7.9814 -1.5060 12 6 6.3519 9.7060 -1.2211 13 1 5.6512 10.2455 -0.6012 14 6 7.4280 10.3707 -1.7926 15 7 8.2822 9.7129 -2.5478 16 14 7.6640 12.1988 -1.4900 17 1 6.5756 12.6999 -0.6127 18 1 8.9750 12.4262 -0.8306 19 1 7.6293 12.9236 -2.7857 20 6 3.8551 3.4952 0.0053 21 6 3.5524 2.1303 -0.0010 22 6 4.6347 1.1319 -0.0022 23 8 4.3678 -0.0536 0.0025 24 8 5.9215 1.5330 -0.0027 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.1624 2.3522 0.0014 29 1 0.7122 4.7440 0.0019 30 1 2.5555 6.4207 0.4624 31 1 3.8189 8.3157 -0.9344 32 1 4.8063 7.9522 0.5012 33 1 9.0340 10.1775 -2.9475 34 1 4.8847 3.8213 0.0098 35 1 6.5970 0.8410 -0.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599815337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:48 Heat of formation + Delta-G solvation = -91.698730 kcal Electronic energy + Delta-G solvation = -21880.851722 eV Core-core repulsion = 18289.738524 eV Total energy + Delta-G solvation = -3591.113199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76831 -39.92726 -38.22843 -36.17280 -34.72166 -32.49074 -31.85381 -30.88370 -29.22878 -28.36433 -25.55924 -25.01747 -23.35621 -21.55867 -20.40944 -18.66626 -18.01275 -17.88921 -17.45848 -16.59083 -15.98882 -15.78442 -15.56219 -15.04016 -14.85912 -14.78296 -14.47118 -14.12329 -14.03041 -13.47846 -13.41486 -13.16419 -13.06900 -12.65206 -12.33350 -12.10319 -12.00721 -11.62389 -11.23867 -11.11546 -11.08596 -10.84442 -10.73932 -9.88922 -9.83322 -9.67500 -9.33214 -9.13508 -8.99750 -8.33158 -7.42197 -6.58380 -6.27881 -3.99597 0.37862 0.95308 1.30481 2.22547 2.31409 2.77610 2.82061 2.95932 3.17914 3.22683 3.27516 3.49561 3.53035 4.13550 4.42148 4.66061 4.79811 4.80921 4.82155 5.05381 5.07080 5.07810 5.13344 5.40403 5.48638 5.59077 5.66672 5.73037 5.87750 5.99639 6.02179 6.14373 6.38140 6.70540 7.35245 7.54111 7.79505 8.27940 8.29460 9.17736 10.79545 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.002494 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.893228 B =11222.627127 C =12070.027793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 S -0.017 6.017 3 C -0.060 4.060 4 C -0.128 4.128 5 C -0.091 4.091 6 C 0.139 3.861 7 N -0.680 5.680 8 C 0.530 3.470 9 O -0.492 6.492 10 C -0.154 4.154 11 S -0.056 6.056 12 C -0.537 4.537 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.044 4.044 21 C -0.102 4.102 22 C 0.525 3.475 23 O -0.494 6.494 24 O -0.502 6.502 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.412 0.588 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.269 0.731 34 H 0.159 0.841 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 -15.256 8.121 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.362 4.362 2 S 0.228 5.772 3 C -0.175 4.175 4 C -0.152 4.152 5 C -0.113 4.113 6 C 0.042 3.958 7 N -0.328 5.328 8 C 0.318 3.682 9 O -0.364 6.364 10 C -0.304 4.304 11 S 0.171 5.829 12 C -0.685 4.685 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.066 4.066 21 C -0.110 4.110 22 C 0.369 3.631 23 O -0.384 6.384 24 O -0.313 6.313 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.248 0.752 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.177 0.823 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -14.696 -17.568 6.911 23.925 hybrid contribution -1.367 3.184 1.098 3.635 sum -16.063 -14.384 8.010 23.002 Atomic orbital electron populations 1.24066 1.00016 1.06851 1.05235 1.86844 1.00959 0.99636 1.89742 1.21999 0.94515 0.98766 1.02185 1.20848 0.98204 0.92002 1.04167 1.21041 0.94880 0.96036 0.99391 1.17646 0.92812 0.84182 1.01210 1.43753 1.28350 1.05597 1.55060 1.20612 0.79229 0.90755 0.77615 1.90749 1.50632 1.57319 1.37669 1.23544 1.06986 0.93214 1.06688 1.85459 1.23496 1.11476 1.62503 1.22887 1.14880 0.93829 1.36875 0.90768 1.24999 0.94797 0.99323 0.94455 1.70014 1.13526 1.36389 1.30235 0.86103 0.78274 0.82818 0.78212 1.19602 1.20525 1.20534 1.21521 1.01174 0.90049 0.93875 1.18372 0.89447 0.92324 1.10867 1.20606 0.82590 0.87247 0.72675 1.90816 1.83068 1.18217 1.46312 1.84648 1.16362 1.44756 1.85519 0.90021 0.87625 0.90069 0.84585 0.84584 0.75205 0.88774 0.88616 0.92139 0.82322 0.72632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 9.15 101.05 0.92 -0.37 16 2 S -0.02 -0.19 19.45 -107.50 -2.09 -2.28 16 3 C -0.06 -0.71 6.16 -38.46 -0.24 -0.95 16 4 C -0.13 -1.22 9.35 -39.43 -0.37 -1.59 16 5 C -0.09 -0.87 9.94 -39.36 -0.39 -1.26 16 6 C 0.14 1.73 6.27 -83.66 -0.52 1.21 16 7 N -0.68 -8.36 5.35 -9.86 -0.05 -8.41 16 8 C 0.53 9.07 7.58 -10.99 -0.08 8.99 16 9 O -0.49 -10.32 13.56 5.54 0.08 -10.24 16 10 C -0.15 -2.84 6.16 36.00 0.22 -2.62 16 11 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 12 C -0.54 -14.74 9.50 30.94 0.29 -14.45 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 15 N -0.87 -25.55 13.22 55.49 0.73 -24.81 16 16 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.04 -0.63 8.21 -38.98 -0.32 -0.95 16 21 C -0.10 -1.39 5.89 -104.82 -0.62 -2.00 16 22 C 0.52 7.17 8.25 34.39 0.28 7.46 16 23 O -0.49 -7.29 14.54 -19.28 -0.28 -7.57 16 24 O -0.50 -5.95 12.68 -40.71 -0.52 -6.47 16 25 H 0.08 0.49 7.75 -51.92 -0.40 0.08 16 26 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.45 7.75 -51.92 -0.40 0.05 16 28 H 0.14 0.92 5.88 -52.49 -0.31 0.61 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.41 3.48 8.82 -40.82 -0.36 3.13 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.10 1.61 8.14 -51.91 -0.42 1.18 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.16 2.60 5.97 -52.49 -0.31 2.29 16 35 H 0.42 2.82 9.11 45.56 0.42 3.24 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -35.69 336.07 -7.82 -43.51 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.61 Total: 3.59 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.91 Total: -4.58 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.68 Total: -33.22 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.72 Total: -24.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -4.30 Total: -5.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.69 -7.82 -43.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599815337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.185 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds