Wall clock time and date at job start Tue Mar 31 2020 14:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76204 * 102.99771 * 2 1 4 4 C 1.39028 * 120.11864 * 0.02562 * 3 2 1 5 5 C 1.37840 * 120.14422 * 179.97438 * 4 3 2 6 6 C 1.39219 * 120.38321 * 0.02562 * 5 4 3 7 7 N 1.40166 * 119.88036 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99990 * 213.31916 * 7 6 5 9 9 O 1.21297 * 119.99741 * 5.27979 * 8 7 6 10 10 C 1.50697 * 120.00127 * 185.27474 * 8 7 6 11 11 S 1.80998 * 109.47268 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00365 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99371 * 0.02562 * 12 11 10 14 14 C 1.38793 * 119.99970 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00539 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46903 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46969 * 120.00450 * 16 14 12 19 19 H 1.48506 * 109.47320 * 240.00496 * 16 14 12 20 20 C 1.38290 * 120.23157 * 359.72116 * 6 5 4 21 21 C 1.39804 * 119.85080 * 0.55152 * 20 6 5 22 22 C 1.47250 * 120.18518 * 179.72520 * 21 20 6 23 23 O 1.21525 * 119.99840 * 179.44886 * 22 21 20 24 24 O 1.34779 * 120.00007 * 359.72330 * 22 21 20 25 25 H 1.09000 * 109.46981 * 60.00553 * 1 2 3 26 26 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47548 * 300.00197 * 1 2 3 28 28 H 1.07997 * 119.92895 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.81367 * 180.02562 * 5 4 3 30 30 H 0.97004 * 120.00340 * 33.32993 * 7 6 5 31 31 H 1.08995 * 109.47503 * 300.00251 * 10 8 7 32 32 H 1.09008 * 109.47156 * 60.00437 * 10 8 7 33 33 H 0.96994 * 120.00835 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.07118 * 180.30151 * 20 6 5 35 35 H 0.96703 * 117.00015 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1954 2.6671 0.0005 5 6 1.5048 4.0104 0.0011 6 6 2.8332 4.4269 0.0005 7 7 3.1359 5.7955 0.0005 8 6 4.2334 6.2430 -0.6410 9 8 4.9064 5.4769 -1.2980 10 6 4.6244 7.6950 -0.5423 11 16 6.1296 7.9814 -1.5060 12 6 6.3519 9.7060 -1.2211 13 1 5.6512 10.2455 -0.6012 14 6 7.4280 10.3707 -1.7926 15 7 8.2822 9.7129 -2.5478 16 14 7.6640 12.1988 -1.4900 17 1 6.5756 12.6999 -0.6127 18 1 8.9750 12.4262 -0.8306 19 1 7.6293 12.9236 -2.7857 20 6 3.8551 3.4952 0.0053 21 6 3.5524 2.1303 -0.0010 22 6 4.6347 1.1319 -0.0022 23 8 4.3678 -0.0536 0.0025 24 8 5.9215 1.5330 -0.0027 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.1624 2.3522 0.0014 29 1 0.7122 4.7440 0.0019 30 1 2.5555 6.4207 0.4624 31 1 3.8189 8.3157 -0.9344 32 1 4.8063 7.9522 0.5012 33 1 9.0340 10.1775 -2.9475 34 1 4.8847 3.8213 0.0098 35 1 6.5970 0.8410 -0.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599815337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:48 Heat of formation + Delta-G solvation = -117.282972 kcal Electronic energy + Delta-G solvation = -21881.961138 eV Core-core repulsion = 18289.738524 eV Total energy + Delta-G solvation = -3592.222615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80714 -41.04910 -39.30105 -37.18104 -35.87676 -34.57550 -32.72778 -32.07516 -30.07182 -29.33408 -27.65371 -25.96521 -24.36423 -22.55141 -21.61233 -19.99105 -19.42000 -18.95770 -18.47853 -17.94565 -17.02794 -16.86999 -16.83502 -16.68920 -16.07607 -15.90438 -15.70294 -15.31125 -14.89992 -14.64899 -14.50988 -14.34174 -14.02748 -13.67593 -13.56250 -13.16027 -13.02809 -12.91211 -12.90378 -12.64148 -12.59158 -12.17826 -11.82876 -11.69812 -11.15184 -11.03848 -10.62442 -10.26518 -10.23916 -9.98642 -8.66201 -8.34209 -8.30518 -6.11853 -0.54638 0.02606 0.50842 1.23724 1.30031 1.42432 1.46259 1.53865 1.57519 1.59290 2.02935 2.14949 2.27381 2.56898 3.00642 3.28531 3.57579 3.79246 3.92111 4.11101 4.18883 4.29809 4.31581 4.36216 4.37348 4.51410 4.67837 4.77718 4.94631 4.97863 5.10672 5.19820 5.43783 5.48876 5.71455 6.21051 6.33529 6.89893 7.07546 7.08439 8.75102 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.002494 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.893228 B =11222.627127 C =12070.027793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 S -0.071 6.071 3 C -0.059 4.059 4 C -0.120 4.120 5 C -0.067 4.067 6 C 0.120 3.880 7 N -0.653 5.653 8 C 0.534 3.466 9 O -0.539 6.539 10 C -0.128 4.128 11 S -0.150 6.150 12 C -0.543 4.543 13 H 0.086 0.914 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 0.998 3.002 17 H -0.255 1.255 18 H -0.276 1.276 19 H -0.275 1.275 20 C -0.063 4.063 21 C -0.127 4.127 22 C 0.520 3.480 23 O -0.511 6.511 24 O -0.510 6.510 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.174 0.826 29 H 0.180 0.820 30 H 0.433 0.567 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.270 0.730 34 H 0.127 0.873 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 -14.162 9.415 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 S 0.175 5.825 3 C -0.174 4.174 4 C -0.144 4.144 5 C -0.089 4.089 6 C 0.023 3.977 7 N -0.302 5.302 8 C 0.321 3.679 9 O -0.415 6.415 10 C -0.279 4.279 11 S 0.077 5.923 12 C -0.691 4.691 13 H 0.104 0.896 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.820 3.180 17 H -0.178 1.178 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.085 4.085 21 C -0.136 4.136 22 C 0.365 3.635 23 O -0.403 6.403 24 O -0.323 6.323 25 H 0.114 0.886 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.191 0.809 29 H 0.198 0.802 30 H 0.274 0.726 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -18.568 -16.490 8.245 26.167 hybrid contribution -0.337 2.669 0.751 2.794 sum -18.905 -13.821 8.996 25.087 Atomic orbital electron populations 1.24132 0.95297 1.08386 1.06788 1.87022 1.06043 0.99980 1.89451 1.22218 0.94321 0.99492 1.01327 1.21327 0.99279 0.91445 1.02323 1.21441 0.94196 0.96964 0.96274 1.17795 0.93809 0.83412 1.02725 1.43303 1.26908 1.06218 1.53786 1.20334 0.80095 0.89788 0.77691 1.90751 1.52540 1.58091 1.40110 1.23355 1.03389 0.94872 1.06282 1.85663 1.29199 1.12216 1.65214 1.23235 1.15153 0.93989 1.36693 0.89609 1.26119 0.94407 1.04694 0.94030 1.70183 1.14355 1.38632 1.31692 0.84914 0.78580 0.76156 0.78351 1.17825 1.20165 1.20098 1.21311 1.00438 0.91032 0.95699 1.18490 0.90481 0.91995 1.12614 1.20808 0.83037 0.87244 0.72380 1.90810 1.83522 1.18723 1.47292 1.84633 1.16617 1.45879 1.85219 0.88608 0.86172 0.88212 0.80870 0.80238 0.72632 0.86277 0.86468 0.92054 0.85480 0.70638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.15 113.37 1.04 -0.68 16 2 S -0.07 -1.49 19.45 -56.49 -1.10 -2.59 16 3 C -0.06 -1.32 6.16 23.00 0.14 -1.18 16 4 C -0.12 -1.82 9.35 22.37 0.21 -1.61 16 5 C -0.07 -1.00 9.94 22.41 0.22 -0.78 16 6 C 0.12 2.78 6.27 38.06 0.24 3.02 16 7 N -0.65 -14.68 5.35 -303.48 -1.62 -16.30 16 8 C 0.53 18.04 7.58 87.66 0.66 18.71 16 9 O -0.54 -23.53 13.56 -3.08 -0.04 -23.57 16 10 C -0.13 -4.60 6.16 71.23 0.44 -4.16 16 11 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 12 C -0.54 -29.91 9.50 67.95 0.65 -29.26 16 13 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 14 C 0.01 0.68 5.49 84.86 0.47 1.14 16 15 N -0.91 -55.21 13.22 21.65 0.29 -54.92 16 16 Si 1.00 42.63 29.55 68.60 2.03 44.65 16 17 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 20 C -0.06 -1.84 8.21 22.66 0.19 -1.66 16 21 C -0.13 -3.56 5.89 -19.99 -0.12 -3.67 16 22 C 0.52 15.11 8.25 70.19 0.58 15.69 16 23 O -0.51 -15.83 14.54 19.75 0.29 -15.55 16 24 O -0.51 -13.24 12.68 -56.90 -0.72 -13.96 16 25 H 0.10 0.71 7.75 -2.39 -0.02 0.69 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.64 7.75 -2.39 -0.02 0.62 16 28 H 0.17 1.34 5.88 -2.91 -0.02 1.32 16 29 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.43 5.72 8.82 -92.71 -0.82 4.90 16 31 H 0.12 3.70 8.14 -2.40 -0.02 3.68 16 32 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.13 4.53 5.97 -2.91 -0.02 4.51 16 35 H 0.43 6.70 9.11 -74.05 -0.67 6.03 16 Total: -1.00 -82.94 336.07 2.35 -80.60 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -0.32 Total: 15.23 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.71 Total: -4.44 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.34 Total: -71.22 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.48 Total: -53.07 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -2.26 Total: -11.75 kcal Total: -82.94 2.35 -80.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599815337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.687 kcal (2) G-P(sol) polarization free energy of solvation -82.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds