Wall clock time and date at job start Tue Mar 31 2020 15:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00139 * 2 1 4 4 H 1.48496 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46947 * 299.99672 * 3 2 1 6 6 H 1.48500 * 109.47240 * 60.00034 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42901 * 112.94289 * 311.58843 * 9 7 2 11 11 C 1.53946 * 113.74159 * 180.02562 * 9 7 2 12 12 N 1.47580 * 86.24073 * 221.88255 * 11 9 7 13 13 S 1.65602 * 134.49357 * 204.69729 * 12 11 9 14 14 O 1.42103 * 106.40129 * 203.53557 * 13 12 11 15 15 O 1.42095 * 106.40040 * 336.45650 * 13 12 11 16 16 C 1.76200 * 107.21994 * 89.99822 * 13 12 11 17 17 C 1.38385 * 119.92784 * 89.99947 * 16 13 12 18 18 C 1.38345 * 120.30457 * 179.97438 * 17 16 13 19 19 C 1.37961 * 120.15163 * 0.02562 * 18 17 16 20 20 C 1.39612 * 119.84598 * 0.02562 * 19 18 17 21 21 C 1.47723 * 120.15040 * 179.97438 * 20 19 18 22 22 O 1.21470 * 120.00283 * 179.97438 * 21 20 19 23 23 O 1.34710 * 119.99738 * 359.97438 * 21 20 19 24 24 C 1.37928 * 119.92301 * 269.72443 * 16 13 12 25 25 C 1.47927 * 90.87593 * 24.63353 * 12 11 9 26 26 H 0.97001 * 119.99318 * 359.97438 * 1 2 3 27 27 H 0.96697 * 113.99846 * 48.41410 * 10 9 7 28 28 H 1.09002 * 113.76900 * 336.23958 * 11 9 7 29 29 H 1.09000 * 113.76969 * 107.52379 * 11 9 7 30 30 H 1.08003 * 119.84556 * 359.97438 * 17 16 13 31 31 H 1.08007 * 119.92131 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.07664 * 180.02562 * 19 18 17 33 33 H 0.96704 * 116.99849 * 179.97438 * 23 21 20 34 34 H 1.08001 * 120.07623 * 359.97438 * 24 16 13 35 35 H 1.09004 * 113.77332 * 221.05836 * 25 12 11 36 36 H 1.08998 * 113.87432 * 89.67721 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.2157 -2.5446 0.9844 11 6 2.1615 -3.7405 0.0018 12 7 1.2209 -4.3113 -0.9818 13 16 0.8064 -5.8495 -1.4341 14 8 0.2885 -5.7539 -2.7539 15 8 1.9071 -6.6795 -1.0894 16 6 -0.5355 -6.3511 -0.4083 17 6 -1.8379 -6.1035 -0.8050 18 6 -2.8974 -6.4944 -0.0059 19 6 -2.6616 -7.1340 1.1935 20 6 -1.3501 -7.3861 1.6005 21 6 -1.0899 -8.0700 2.8837 22 8 0.0523 -8.2883 3.2349 23 8 -2.1192 -8.4515 3.6645 24 6 -0.2856 -6.9948 0.7857 25 6 0.7982 -2.9562 -1.3980 26 1 -0.4849 0.8401 0.0004 27 1 -0.3586 -1.7665 0.9872 28 1 3.1578 -3.5550 -0.3994 29 1 2.1784 -4.2720 0.9533 30 1 -2.0281 -5.6028 -1.7429 31 1 -3.9115 -6.2984 -0.3218 32 1 -3.4896 -7.4391 1.8162 33 1 -1.8993 -8.8959 4.4947 34 1 0.7312 -7.1918 1.0919 35 1 -0.2749 -2.8625 -1.5647 36 1 1.3928 -2.5387 -2.2105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:53 Heat of formation + Delta-G solvation = -144.504857 kcal Electronic energy + Delta-G solvation = -25882.203593 eV Core-core repulsion = 21846.047678 eV Total energy + Delta-G solvation = -4036.155915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56924 -38.78775 -38.49347 -36.90408 -36.27812 -35.54820 -33.94518 -32.18600 -31.77508 -31.38033 -27.82858 -25.34626 -24.99569 -24.68299 -23.38681 -21.55747 -19.72270 -18.97260 -18.10458 -17.93871 -17.39231 -16.70459 -16.23058 -15.99467 -15.84683 -15.80716 -15.21546 -14.76610 -14.30513 -14.19785 -13.75141 -13.56711 -13.33013 -13.08594 -12.96762 -12.43180 -12.15726 -11.94665 -11.82365 -11.77624 -11.66972 -11.66563 -11.54595 -11.13887 -10.93969 -10.84414 -10.69261 -10.51797 -10.26935 -9.63926 -9.33130 -9.29266 -8.79357 -8.62416 -8.11541 -6.39098 -4.48615 0.35699 0.64760 0.90123 2.27892 2.75778 3.14161 3.21442 3.24359 3.28185 3.52311 4.05962 4.18955 4.39209 4.60611 4.71317 4.75262 4.86598 5.01585 5.21312 5.36193 5.44159 5.58956 5.85128 5.92002 6.00033 6.03576 6.05649 6.23722 6.27143 6.35868 6.51555 6.61127 6.69501 6.99136 7.48078 7.65501 7.67107 7.83248 8.54870 9.22188 9.45762 10.67229 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.004102 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.038554 B = 6824.830895 C = 7487.265142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.241 3.759 10 O -0.574 6.574 11 C 0.135 3.865 12 N -1.034 6.034 13 S 2.706 3.294 14 O -0.962 6.962 15 O -0.963 6.963 16 C -0.677 4.677 17 C 0.021 3.979 18 C -0.153 4.153 19 C -0.013 4.013 20 C -0.152 4.152 21 C 0.530 3.470 22 O -0.507 6.507 23 O -0.513 6.513 24 C 0.049 3.951 25 C 0.110 3.890 26 H 0.272 0.728 27 H 0.393 0.607 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.415 0.585 34 H 0.153 0.847 35 H 0.066 0.934 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -10.996 2.158 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.197 3.803 10 O -0.387 6.387 11 C 0.010 3.990 12 N -0.876 5.876 13 S 2.798 3.202 14 O -0.953 6.953 15 O -0.954 6.954 16 C -0.761 4.761 17 C 0.002 3.998 18 C -0.171 4.171 19 C -0.032 4.032 20 C -0.154 4.154 21 C 0.374 3.626 22 O -0.396 6.396 23 O -0.325 6.325 24 C 0.030 3.970 25 C -0.015 4.015 26 H 0.083 0.917 27 H 0.248 0.752 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.274 0.726 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.440 -12.057 1.308 13.732 hybrid contribution -0.404 1.121 0.938 1.516 sum -6.844 -10.937 2.246 13.096 Atomic orbital electron populations 1.69320 1.06176 1.28010 1.50515 1.25069 0.95008 0.99857 0.93131 0.86295 0.80141 0.82364 0.77790 1.19431 1.20721 1.20739 1.21628 0.94087 0.90067 1.51595 0.90916 1.19985 0.85333 0.91021 0.83962 1.86022 1.46275 1.48989 1.57412 1.23068 0.93131 0.93045 0.89763 1.59945 1.53863 1.19520 1.54287 1.01369 0.73396 0.72114 0.73304 1.93543 1.81253 1.86433 1.34038 1.93549 1.50337 1.66670 1.84804 1.31333 1.16709 1.14947 1.13145 1.21246 0.90757 0.89834 0.97997 1.21292 0.99917 1.00877 0.95038 1.21707 0.95777 0.90862 0.94818 1.19060 0.95084 1.07168 0.94088 1.20754 0.82344 0.75523 0.83969 1.90922 1.23060 1.52737 1.72912 1.84530 1.39682 1.72394 1.35921 1.20980 0.99823 0.86984 0.89231 1.23906 0.99631 0.75701 1.02230 0.91745 0.75168 0.89301 0.91245 0.83566 0.84064 0.83803 0.72606 0.82960 0.91514 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.18 11.08 55.43 0.61 -21.56 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.53 -12.99 8.63 -34.44 -0.30 -13.29 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.24 5.49 1.44 -90.84 -0.13 5.36 16 10 O -0.57 -13.85 13.49 -35.23 -0.48 -14.32 16 11 C 0.13 2.71 8.35 -2.97 -0.02 2.68 16 12 N -1.03 -20.18 4.13 -117.70 -0.49 -20.67 16 13 S 2.71 49.15 6.24 -107.50 -0.67 48.48 16 14 O -0.96 -18.68 17.25 -57.17 -0.99 -19.66 16 15 O -0.96 -19.09 17.24 -57.17 -0.99 -20.08 16 16 C -0.68 -10.90 5.97 -39.64 -0.24 -11.13 16 17 C 0.02 0.29 9.52 -39.49 -0.38 -0.09 16 18 C -0.15 -1.72 10.03 -39.64 -0.40 -2.12 16 19 C -0.01 -0.15 9.62 -39.17 -0.38 -0.53 16 20 C -0.15 -2.11 5.87 -104.98 -0.62 -2.73 16 21 C 0.53 6.97 8.27 34.61 0.29 7.26 16 22 O -0.51 -8.19 17.13 -19.24 -0.33 -8.52 16 23 O -0.51 -4.64 12.68 -40.52 -0.51 -5.15 16 24 C 0.05 0.78 9.07 -39.17 -0.36 0.43 16 25 C 0.11 2.31 8.38 -2.79 -0.02 2.29 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.39 9.71 6.42 45.56 0.29 10.01 16 28 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.15 1.84 7.61 -52.48 -0.40 1.44 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.14 1.21 7.61 -52.49 -0.40 0.81 16 33 H 0.42 1.83 9.11 45.56 0.42 2.25 16 34 H 0.15 2.48 7.20 -52.49 -0.38 2.10 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -31.32 335.24 -8.57 -39.89 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -2.12 Total: 12.65 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.64 Total: -10.23 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.13 Total: -42.23 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -3.29 Total: -67.73 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.67 Total: 48.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.32 -8.57 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.611 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds