Wall clock time and date at job start Tue Mar 31 2020 15:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00139 * 2 1 4 4 H 1.48496 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46947 * 299.99672 * 3 2 1 6 6 H 1.48500 * 109.47240 * 60.00034 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42901 * 112.94289 * 311.58843 * 9 7 2 11 11 C 1.53946 * 113.74159 * 180.02562 * 9 7 2 12 12 N 1.47580 * 86.24073 * 221.88255 * 11 9 7 13 13 S 1.65602 * 134.49357 * 204.69729 * 12 11 9 14 14 O 1.42103 * 106.40129 * 203.53557 * 13 12 11 15 15 O 1.42095 * 106.40040 * 336.45650 * 13 12 11 16 16 C 1.76200 * 107.21994 * 89.99822 * 13 12 11 17 17 C 1.38385 * 119.92784 * 89.99947 * 16 13 12 18 18 C 1.38345 * 120.30457 * 179.97438 * 17 16 13 19 19 C 1.37961 * 120.15163 * 0.02562 * 18 17 16 20 20 C 1.39612 * 119.84598 * 0.02562 * 19 18 17 21 21 C 1.47723 * 120.15040 * 179.97438 * 20 19 18 22 22 O 1.21470 * 120.00283 * 179.97438 * 21 20 19 23 23 O 1.34710 * 119.99738 * 359.97438 * 21 20 19 24 24 C 1.37928 * 119.92301 * 269.72443 * 16 13 12 25 25 C 1.47927 * 90.87593 * 24.63353 * 12 11 9 26 26 H 0.97001 * 119.99318 * 359.97438 * 1 2 3 27 27 H 0.96697 * 113.99846 * 48.41410 * 10 9 7 28 28 H 1.09002 * 113.76900 * 336.23958 * 11 9 7 29 29 H 1.09000 * 113.76969 * 107.52379 * 11 9 7 30 30 H 1.08003 * 119.84556 * 359.97438 * 17 16 13 31 31 H 1.08007 * 119.92131 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.07664 * 180.02562 * 19 18 17 33 33 H 0.96704 * 116.99849 * 179.97438 * 23 21 20 34 34 H 1.08001 * 120.07623 * 359.97438 * 24 16 13 35 35 H 1.09004 * 113.77332 * 221.05836 * 25 12 11 36 36 H 1.08998 * 113.87432 * 89.67721 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.2157 -2.5446 0.9844 11 6 2.1615 -3.7405 0.0018 12 7 1.2209 -4.3113 -0.9818 13 16 0.8064 -5.8495 -1.4341 14 8 0.2885 -5.7539 -2.7539 15 8 1.9071 -6.6795 -1.0894 16 6 -0.5355 -6.3511 -0.4083 17 6 -1.8379 -6.1035 -0.8050 18 6 -2.8974 -6.4944 -0.0059 19 6 -2.6616 -7.1340 1.1935 20 6 -1.3501 -7.3861 1.6005 21 6 -1.0899 -8.0700 2.8837 22 8 0.0523 -8.2883 3.2349 23 8 -2.1192 -8.4515 3.6645 24 6 -0.2856 -6.9948 0.7857 25 6 0.7982 -2.9562 -1.3980 26 1 -0.4849 0.8401 0.0004 27 1 -0.3586 -1.7665 0.9872 28 1 3.1578 -3.5550 -0.3994 29 1 2.1784 -4.2720 0.9533 30 1 -2.0281 -5.6028 -1.7429 31 1 -3.9115 -6.2984 -0.3218 32 1 -3.4896 -7.4391 1.8162 33 1 -1.8993 -8.8959 4.4947 34 1 0.7312 -7.1918 1.0919 35 1 -0.2749 -2.8625 -1.5647 36 1 1.3928 -2.5387 -2.2105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:52 Heat of formation + Delta-G solvation = -169.824171 kcal Electronic energy + Delta-G solvation = -25883.301521 eV Core-core repulsion = 21846.047678 eV Total energy + Delta-G solvation = -4037.253843 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56319 -40.17824 -39.80054 -38.41924 -37.19920 -37.07372 -35.73405 -34.04867 -32.83338 -32.41697 -29.55968 -26.97806 -26.43211 -26.02501 -24.48159 -22.54627 -21.36614 -20.22108 -19.63321 -19.05755 -18.88451 -18.30038 -17.33966 -17.23139 -17.16160 -16.91919 -16.79342 -16.03992 -15.97689 -15.42871 -15.17869 -14.92664 -14.71773 -14.54226 -14.11715 -13.87758 -13.49033 -13.38900 -13.38288 -13.30914 -13.27454 -12.89551 -12.83871 -12.69753 -12.53953 -12.20833 -12.14185 -12.04259 -11.82168 -11.10533 -10.72008 -10.58681 -10.33576 -10.28132 -9.83168 -8.21920 -6.37458 -0.83351 -0.59523 -0.23156 1.27149 1.47116 1.52440 1.61919 1.82560 1.87878 2.38943 2.43929 2.66056 2.96792 3.07529 3.59162 3.66194 3.72005 3.81884 3.99605 4.12174 4.32726 4.39530 4.47657 4.61220 4.63967 4.71702 4.84417 4.94028 4.96730 5.04351 5.06172 5.26807 5.44677 5.54871 5.74242 5.85077 6.01158 6.68515 6.84945 7.35554 7.55640 8.83572 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.004102 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.038554 B = 6824.830895 C = 7487.265142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.223 3.777 10 O -0.582 6.582 11 C 0.135 3.865 12 N -1.036 6.036 13 S 2.719 3.281 14 O -0.977 6.977 15 O -0.986 6.986 16 C -0.689 4.689 17 C 0.006 3.994 18 C -0.140 4.140 19 C 0.003 3.997 20 C -0.165 4.165 21 C 0.537 3.463 22 O -0.547 6.547 23 O -0.494 6.494 24 C 0.026 3.974 25 C 0.114 3.886 26 H 0.275 0.725 27 H 0.387 0.613 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.437 0.563 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 -11.277 2.650 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.179 3.821 10 O -0.394 6.394 11 C 0.010 3.990 12 N -0.877 5.877 13 S 2.815 3.185 14 O -0.968 6.968 15 O -0.976 6.976 16 C -0.777 4.777 17 C -0.013 4.013 18 C -0.158 4.158 19 C -0.015 4.015 20 C -0.167 4.167 21 C 0.383 3.617 22 O -0.439 6.439 23 O -0.308 6.308 24 C 0.006 3.994 25 C -0.011 4.011 26 H 0.085 0.915 27 H 0.242 0.758 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.202 0.798 32 H 0.200 0.800 33 H 0.300 0.700 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.394 -12.340 1.794 15.032 hybrid contribution 0.073 1.112 0.864 1.410 sum -8.321 -11.228 2.658 14.226 Atomic orbital electron populations 1.69382 1.06982 1.28668 1.50754 1.25697 0.95737 1.02367 0.92895 0.85408 0.79043 0.79021 0.77519 1.19283 1.20511 1.20840 1.21887 0.94313 0.91115 1.51981 0.90972 1.20213 0.85589 0.91625 0.84626 1.86013 1.46561 1.48635 1.58182 1.23085 0.93525 0.92069 0.90350 1.59870 1.54091 1.19603 1.54110 1.00715 0.73451 0.71260 0.73108 1.93513 1.81472 1.86461 1.35378 1.93513 1.52139 1.66833 1.85145 1.30819 1.16677 1.16915 1.13298 1.21565 0.90522 0.90220 0.99017 1.21790 1.01054 0.98880 0.94096 1.22179 0.95492 0.88913 0.94900 1.19254 0.95743 1.07384 0.94328 1.20654 0.82284 0.74828 0.83972 1.90913 1.24763 1.54427 1.73805 1.84465 1.37724 1.71906 1.36751 1.20938 1.00039 0.88401 0.89985 1.23723 0.99603 0.76484 1.01300 0.91543 0.75821 0.87926 0.90920 0.82684 0.79772 0.79961 0.70011 0.84667 0.91554 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.13 11.08 21.45 0.24 -44.90 16 2 C 0.03 1.61 5.39 84.65 0.46 2.07 16 3 Si 0.96 38.98 29.54 68.60 2.03 41.01 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.55 -27.01 8.63 25.60 0.22 -26.79 16 8 H 0.07 3.43 7.81 -2.91 -0.02 3.40 16 9 C 0.22 10.25 1.44 -10.89 -0.02 10.23 16 10 O -0.58 -28.37 13.49 -148.98 -2.01 -30.38 16 11 C 0.13 5.48 8.35 86.48 0.72 6.21 16 12 N -1.04 -40.96 4.13 -529.70 -2.19 -43.15 16 13 S 2.72 100.43 6.24 -56.49 -0.35 100.07 16 14 O -0.98 -38.19 17.25 -128.00 -2.21 -40.40 16 15 O -0.99 -40.24 17.24 -128.00 -2.21 -42.44 16 16 C -0.69 -22.08 5.97 22.23 0.13 -21.94 16 17 C 0.01 0.16 9.52 22.33 0.21 0.37 16 18 C -0.14 -2.63 10.03 22.23 0.22 -2.41 16 19 C 0.00 0.06 9.62 22.54 0.22 0.27 16 20 C -0.16 -4.32 5.87 -20.10 -0.12 -4.44 16 21 C 0.54 13.33 8.27 70.33 0.58 13.91 16 22 O -0.55 -17.63 17.13 19.93 0.34 -17.29 16 23 O -0.49 -7.35 12.68 -56.20 -0.71 -8.07 16 24 C 0.03 0.84 9.07 22.54 0.20 1.04 16 25 C 0.11 4.83 8.38 86.41 0.72 5.55 16 26 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 27 H 0.39 19.40 6.42 -74.06 -0.48 18.92 16 28 H 0.10 3.82 8.09 -2.39 -0.02 3.80 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.16 3.67 7.61 -2.91 -0.02 3.65 16 31 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 32 H 0.18 2.04 7.61 -2.91 -0.02 2.02 16 33 H 0.44 2.49 9.11 -74.05 -0.67 1.82 16 34 H 0.14 4.67 7.20 -2.91 -0.02 4.65 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.09 3.52 8.09 -2.39 -0.02 3.50 16 Total: -1.00 -67.83 335.24 -3.50 -71.33 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.01 Total: 30.15 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.56 Total: -15.93 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.95 Total: -88.05 kcal Atomic # 8 Polarization: -131.78 SS G_CDS: -6.80 Total: -138.58 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 16 Polarization: 100.43 SS G_CDS: -0.35 Total: 100.07 kcal Total: -67.83 -3.50 -71.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.498 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds