Wall clock time and date at job start Tue Mar 31 2020 15:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46699 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 299.99621 * 3 2 1 6 6 H 1.48498 * 109.46958 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 S 1.65595 * 119.99670 * 179.72791 * 13 11 10 15 15 O 1.42098 * 106.40331 * 178.53758 * 14 13 11 16 16 O 1.42104 * 106.40251 * 311.45346 * 14 13 11 17 17 C 1.76199 * 107.22343 * 64.99630 * 14 13 11 18 18 C 1.38396 * 119.92303 * 269.73134 * 17 14 13 19 19 C 1.38352 * 120.30025 * 179.71982 * 18 17 14 20 20 C 1.37967 * 120.14913 * 0.55051 * 19 18 17 21 21 C 1.39608 * 119.84736 * 359.72042 * 20 19 18 22 22 C 1.47731 * 120.15074 * 180.02562 * 21 20 19 23 23 O 1.21468 * 120.00105 * 179.97438 * 22 21 20 24 24 O 1.34709 * 119.99746 * 359.97438 * 22 21 20 25 25 C 1.37921 * 119.92723 * 89.99442 * 17 14 13 26 26 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 28 28 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 29 29 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 30 30 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 31 31 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 32 32 H 1.07990 * 119.84812 * 359.97438 * 18 17 14 33 33 H 1.07994 * 119.92467 * 180.24824 * 19 18 17 34 34 H 1.07996 * 120.07469 * 179.74634 * 20 19 18 35 35 H 0.96701 * 117.00164 * 180.02562 * 24 22 21 36 36 H 1.08003 * 120.07519 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 16 1.3375 -7.5684 0.0116 15 8 2.3170 -8.5975 -0.0181 16 8 0.3549 -7.4601 1.0324 17 6 0.4613 -7.6714 -1.5136 18 6 -0.8258 -7.1709 -1.6055 19 6 -1.5188 -7.2425 -2.8008 20 6 -0.9344 -7.8243 -3.9069 21 6 0.3615 -8.3362 -3.8196 22 6 0.9939 -8.9601 -5.0000 23 8 2.1218 -9.4042 -4.9211 24 8 0.3198 -9.0364 -6.1638 25 6 1.0574 -8.2555 -2.6116 26 1 -0.4850 0.8402 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8906 30 1 2.8719 -3.6043 -0.8894 31 1 3.1355 -6.1343 0.0057 32 1 -1.2896 -6.7188 -0.7415 33 1 -2.5213 -6.8464 -2.8668 34 1 -1.4780 -7.8832 -4.8382 35 1 0.7748 -9.4536 -6.9081 36 1 2.0604 -8.6491 -2.5375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:51 Heat of formation + Delta-G solvation = -181.661662 kcal Electronic energy + Delta-G solvation = -25043.450403 eV Core-core repulsion = 21005.683248 eV Total energy + Delta-G solvation = -4037.767155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78451 -39.79552 -39.00886 -37.38190 -36.47368 -36.06743 -34.32837 -33.64833 -32.02328 -31.62730 -31.10382 -26.09276 -25.21385 -23.70745 -22.68327 -21.78041 -20.42482 -19.89877 -18.89646 -18.16264 -17.83124 -17.31198 -16.43776 -16.38668 -16.10855 -16.01231 -15.64048 -15.29811 -14.79002 -14.54403 -14.39237 -13.99007 -13.76698 -13.36578 -12.88357 -12.75614 -12.64086 -12.28666 -12.23960 -12.20081 -11.98622 -11.96323 -11.34461 -11.26461 -11.03605 -11.00576 -10.67315 -10.66050 -10.13264 -10.08477 -9.87592 -9.53836 -9.49023 -9.19860 -8.42377 -6.06126 -4.10952 -0.02004 0.23597 0.56816 2.07061 2.36877 2.55135 2.69492 3.18163 3.27202 3.35091 3.37723 3.50774 4.09373 4.36838 4.39535 4.49777 4.59602 4.78272 4.79760 5.01610 5.19262 5.24755 5.29747 5.41440 5.62059 5.72508 5.86830 5.97097 5.98551 6.05472 6.31053 6.52633 6.84275 7.47362 7.60899 7.68576 7.79838 7.93140 8.28571 8.96335 9.53595 11.04663 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.003273 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.362233 B = 8553.949622 C = 9434.257740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.131 4.131 11 C 0.530 3.470 12 O -0.486 6.486 13 N -1.057 6.057 14 S 2.680 3.320 15 O -0.949 6.949 16 O -0.926 6.926 17 C -0.688 4.688 18 C 0.041 3.959 19 C -0.152 4.152 20 C -0.005 4.005 21 C -0.157 4.157 22 C 0.531 3.469 23 O -0.510 6.510 24 O -0.511 6.511 25 C 0.044 3.956 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.434 0.566 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.417 0.583 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 -18.036 -8.867 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.173 4.173 11 C 0.319 3.681 12 O -0.356 6.356 13 N -0.824 5.824 14 S 2.771 3.229 15 O -0.939 6.939 16 O -0.916 6.916 17 C -0.775 4.775 18 C 0.022 3.978 19 C -0.171 4.171 20 C -0.024 4.024 21 C -0.159 4.159 22 C 0.375 3.625 23 O -0.399 6.399 24 O -0.324 6.324 25 C 0.025 3.975 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.271 0.729 32 H 0.177 0.823 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.276 0.724 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.374 -18.441 -7.852 20.046 hybrid contribution 1.053 0.868 -1.286 1.875 sum 0.679 -17.573 -9.137 19.819 Atomic orbital electron populations 1.69995 1.06061 1.26651 1.49948 1.25014 0.94844 0.99313 0.95121 0.86518 0.80014 0.83687 0.77635 1.19704 1.21009 1.20965 1.21201 0.93043 0.90764 1.51758 0.92369 1.19000 0.93179 0.89347 0.98997 1.22078 1.01078 0.90445 1.03717 1.21761 0.88607 0.85935 0.71765 1.90796 1.13528 1.86761 1.44557 1.55201 1.21788 1.23522 1.81935 1.02581 0.73749 0.72543 0.74056 1.93632 1.59909 1.53393 1.86982 1.93652 1.60128 1.85081 1.52771 1.30776 1.09356 1.16046 1.21304 1.21515 0.90710 0.86587 0.99015 1.21417 1.01758 1.01376 0.92503 1.21825 0.92429 0.88946 0.99163 1.19045 0.96722 1.07924 0.92247 1.20713 0.83305 0.75750 0.82715 1.90919 1.19185 1.45185 1.84585 1.84532 1.50296 1.75837 1.21698 1.20999 0.99096 0.88227 0.89189 0.92899 0.95560 0.95338 0.88853 0.88981 0.72922 0.82254 0.83582 0.83501 0.72415 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.80 4.26 -27.88 -0.12 0.68 16 10 C -0.13 -2.31 5.64 -27.88 -0.16 -2.47 16 11 C 0.53 8.72 7.66 -10.98 -0.08 8.63 16 12 O -0.49 -9.49 13.20 -11.51 -0.15 -9.64 16 13 N -1.06 -13.04 5.70 31.22 0.18 -12.86 16 14 S 2.68 36.18 5.39 -107.50 -0.58 35.60 16 15 O -0.95 -13.40 17.27 -57.17 -0.99 -14.38 16 16 O -0.93 -15.52 16.21 -64.61 -1.05 -16.57 16 17 C -0.69 -8.80 5.74 -39.64 -0.23 -9.02 16 18 C 0.04 0.51 8.53 -39.48 -0.34 0.18 16 19 C -0.15 -1.54 10.03 -39.64 -0.40 -1.94 16 20 C -0.01 -0.05 9.62 -39.17 -0.38 -0.43 16 21 C -0.16 -1.73 5.87 -104.98 -0.62 -2.35 16 22 C 0.53 5.57 8.27 34.61 0.29 5.85 16 23 O -0.51 -6.72 17.13 -19.24 -0.33 -7.05 16 24 O -0.51 -3.58 12.68 -40.52 -0.51 -4.09 16 25 C 0.04 0.53 9.07 -39.17 -0.36 0.18 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.43 3.62 8.83 -34.47 -0.30 3.32 16 32 H 0.16 2.13 6.85 -52.49 -0.36 1.77 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.15 0.99 7.61 -52.49 -0.40 0.59 16 35 H 0.42 1.05 9.11 45.56 0.42 1.46 16 36 H 0.16 1.75 7.20 -52.48 -0.38 1.37 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -37.21 337.19 -8.11 -45.31 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.68 Total: 1.70 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.80 Total: -13.54 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.91 Total: -38.20 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -3.03 Total: -51.73 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 36.18 SS G_CDS: -0.58 Total: 35.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.21 -8.11 -45.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.348 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds