Wall clock time and date at job start Tue Mar 31 2020 15:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46699 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 299.99621 * 3 2 1 6 6 H 1.48498 * 109.46958 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 S 1.65595 * 119.99670 * 179.72791 * 13 11 10 15 15 O 1.42098 * 106.40331 * 178.53758 * 14 13 11 16 16 O 1.42104 * 106.40251 * 311.45346 * 14 13 11 17 17 C 1.76199 * 107.22343 * 64.99630 * 14 13 11 18 18 C 1.38396 * 119.92303 * 269.73134 * 17 14 13 19 19 C 1.38352 * 120.30025 * 179.71982 * 18 17 14 20 20 C 1.37967 * 120.14913 * 0.55051 * 19 18 17 21 21 C 1.39608 * 119.84736 * 359.72042 * 20 19 18 22 22 C 1.47731 * 120.15074 * 180.02562 * 21 20 19 23 23 O 1.21468 * 120.00105 * 179.97438 * 22 21 20 24 24 O 1.34709 * 119.99746 * 359.97438 * 22 21 20 25 25 C 1.37921 * 119.92723 * 89.99442 * 17 14 13 26 26 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 28 28 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 29 29 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 30 30 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 31 31 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 32 32 H 1.07990 * 119.84812 * 359.97438 * 18 17 14 33 33 H 1.07994 * 119.92467 * 180.24824 * 19 18 17 34 34 H 1.07996 * 120.07469 * 179.74634 * 20 19 18 35 35 H 0.96701 * 117.00164 * 180.02562 * 24 22 21 36 36 H 1.08003 * 120.07519 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 16 1.3375 -7.5684 0.0116 15 8 2.3170 -8.5975 -0.0181 16 8 0.3549 -7.4601 1.0324 17 6 0.4613 -7.6714 -1.5136 18 6 -0.8258 -7.1709 -1.6055 19 6 -1.5188 -7.2425 -2.8008 20 6 -0.9344 -7.8243 -3.9069 21 6 0.3615 -8.3362 -3.8196 22 6 0.9939 -8.9601 -5.0000 23 8 2.1218 -9.4042 -4.9211 24 8 0.3198 -9.0364 -6.1638 25 6 1.0574 -8.2555 -2.6116 26 1 -0.4850 0.8402 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8906 30 1 2.8719 -3.6043 -0.8894 31 1 3.1355 -6.1343 0.0057 32 1 -1.2896 -6.7188 -0.7415 33 1 -2.5213 -6.8464 -2.8668 34 1 -1.4780 -7.8832 -4.8382 35 1 0.7748 -9.4536 -6.9081 36 1 2.0604 -8.6491 -2.5375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:51 Heat of formation + Delta-G solvation = -210.709871 kcal Electronic energy + Delta-G solvation = -25044.710028 eV Core-core repulsion = 21005.683248 eV Total energy + Delta-G solvation = -4039.026780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58011 -41.14587 -39.84228 -38.55695 -37.26076 -37.19325 -35.60122 -35.57085 -32.99402 -32.84577 -32.48394 -27.94336 -26.04502 -24.60355 -24.38590 -22.59451 -21.92012 -20.97280 -19.85551 -19.14484 -18.94169 -18.71461 -17.86647 -17.38766 -17.22338 -16.78654 -16.73101 -16.58410 -16.44945 -15.86472 -15.47272 -15.21557 -14.53938 -14.43192 -14.36492 -14.18314 -13.87524 -13.57351 -13.47567 -13.36896 -13.25019 -12.91545 -12.85198 -12.68184 -12.44208 -12.30478 -11.94961 -11.90065 -11.73421 -11.68691 -11.32417 -11.09747 -10.72402 -10.53235 -10.37784 -8.15394 -6.27544 -1.08420 -0.65739 -0.32126 1.06997 1.24494 1.45541 1.46187 1.56058 1.59140 1.86776 2.26125 2.44589 2.49060 3.03121 3.19106 3.47368 3.58752 3.69624 3.81726 3.93263 4.01777 4.13493 4.44807 4.47572 4.55665 4.59785 4.77561 4.90197 5.04787 5.05979 5.45071 5.48323 5.54972 5.67026 5.69139 5.88716 6.19278 6.52925 6.85529 6.92103 7.42425 8.96892 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.003273 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.362233 B = 8553.949622 C = 9434.257740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.035 3.965 10 C -0.124 4.124 11 C 0.538 3.462 12 O -0.522 6.522 13 N -1.038 6.038 14 S 2.696 3.304 15 O -0.954 6.954 16 O -0.962 6.962 17 C -0.694 4.694 18 C 0.018 3.982 19 C -0.150 4.150 20 C 0.010 3.990 21 C -0.166 4.166 22 C 0.540 3.460 23 O -0.542 6.542 24 O -0.498 6.498 25 C 0.035 3.965 26 H 0.262 0.738 27 H -0.006 1.006 28 H -0.010 1.010 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.453 0.547 32 H 0.144 0.856 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.438 0.562 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -18.236 -10.548 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.003 4.003 10 C -0.165 4.165 11 C 0.327 3.673 12 O -0.395 6.395 13 N -0.807 5.807 14 S 2.789 3.211 15 O -0.944 6.944 16 O -0.952 6.952 17 C -0.783 4.783 18 C -0.001 4.001 19 C -0.168 4.168 20 C -0.008 4.008 21 C -0.168 4.168 22 C 0.385 3.615 23 O -0.434 6.434 24 O -0.312 6.312 25 C 0.015 3.985 26 H 0.070 0.930 27 H 0.013 0.987 28 H 0.009 0.991 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.294 0.706 32 H 0.162 0.838 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.301 0.699 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.055 -18.670 -9.535 20.990 hybrid contribution 0.570 0.857 -0.867 1.345 sum 1.624 -17.813 -10.401 20.691 Atomic orbital electron populations 1.70155 1.08066 1.27606 1.51608 1.26021 0.95656 1.03579 0.94873 0.85371 0.79419 0.78688 0.77351 1.17742 1.20843 1.21022 1.21730 0.94098 0.91537 1.50430 0.90511 1.18802 0.93837 0.92004 0.95674 1.21885 0.99737 0.88406 1.06465 1.21473 0.87979 0.86575 0.71254 1.90801 1.15104 1.87348 1.46208 1.54795 1.22914 1.21980 1.81002 1.01863 0.73136 0.72164 0.73907 1.93619 1.60120 1.53422 1.87277 1.93610 1.61173 1.85539 1.54886 1.30468 1.09554 1.17445 1.20866 1.21565 0.91133 0.87627 0.99810 1.21738 1.02696 1.00750 0.91656 1.22176 0.91683 0.86975 1.00010 1.19251 0.97396 1.07962 0.92230 1.20556 0.82715 0.74954 0.83305 1.90913 1.20581 1.46692 1.85218 1.84477 1.49830 1.75505 1.21379 1.21089 0.99461 0.88410 0.89527 0.92955 0.98730 0.99146 0.86290 0.85957 0.70596 0.83833 0.81049 0.80189 0.69919 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -28.55 9.11 25.60 0.23 -28.31 16 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.03 1.74 4.26 29.85 0.13 1.87 16 10 C -0.12 -4.22 5.64 29.85 0.17 -4.05 16 11 C 0.54 17.62 7.66 87.66 0.67 18.29 16 12 O -0.52 -21.10 13.20 13.28 0.18 -20.92 16 13 N -1.04 -24.81 5.70 -173.53 -0.99 -25.80 16 14 S 2.70 73.18 5.39 -56.49 -0.30 72.88 16 15 O -0.95 -26.50 17.27 -128.00 -2.21 -28.71 16 16 O -0.96 -33.30 16.21 -120.89 -1.96 -35.26 16 17 C -0.69 -17.77 5.74 22.23 0.13 -17.65 16 18 C 0.02 0.46 8.53 22.33 0.19 0.65 16 19 C -0.15 -2.83 10.03 22.23 0.22 -2.61 16 20 C 0.01 0.15 9.62 22.54 0.22 0.37 16 21 C -0.17 -3.37 5.87 -20.10 -0.12 -3.49 16 22 C 0.54 10.20 8.27 70.33 0.58 10.78 16 23 O -0.54 -13.60 17.13 19.94 0.34 -13.26 16 24 O -0.50 -5.39 12.68 -56.19 -0.71 -6.10 16 25 C 0.03 0.81 9.07 22.54 0.20 1.01 16 26 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 27 H -0.01 -0.32 8.10 -2.39 -0.02 -0.34 16 28 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 29 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 30 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.45 6.73 8.83 -96.75 -0.85 5.87 16 32 H 0.14 4.08 6.85 -2.92 -0.02 4.06 16 33 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.18 1.70 7.61 -2.91 -0.02 1.68 16 35 H 0.44 0.80 9.11 -74.06 -0.67 0.13 16 36 H 0.16 3.49 7.20 -2.91 -0.02 3.47 16 Total: -1.00 -82.60 337.19 -0.63 -83.23 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -0.37 Total: 8.36 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 3.09 Total: -22.87 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -0.70 Total: -81.79 kcal Atomic # 8 Polarization: -99.88 SS G_CDS: -4.37 Total: -104.25 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 73.18 SS G_CDS: -0.30 Total: 72.88 kcal Total: -82.60 -0.63 -83.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.481 kcal (2) G-P(sol) polarization free energy of solvation -82.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds