Wall clock time and date at job start Tue Mar 31 2020 15:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48505 * 109.46701 * 274.69105 * 3 2 1 5 5 H 1.48499 * 109.47242 * 34.69115 * 3 2 1 6 6 H 1.48500 * 109.47130 * 154.69460 * 3 2 1 7 7 C 1.39935 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99779 * 197.84522 * 7 2 1 9 9 C 1.41431 * 120.00286 * 17.85570 * 7 2 1 10 10 C 1.40794 * 120.17844 * 204.41145 * 9 7 2 11 11 C 1.37704 * 120.04069 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41250 * 359.97438 * 11 10 9 13 13 C 1.39877 * 120.35867 * 359.97438 * 12 11 10 14 14 C 1.47888 * 120.02563 * 180.02562 * 13 12 11 15 15 O 1.21550 * 119.99912 * 179.97438 * 14 13 12 16 16 N 1.34771 * 119.99899 * 359.97438 * 14 13 12 17 17 S 1.65599 * 119.99932 * 180.02562 * 16 14 13 18 18 O 1.42102 * 104.28011 * 181.07042 * 17 16 14 19 19 O 1.42096 * 104.27957 * 308.92718 * 17 16 14 20 20 C 1.81403 * 104.45155 * 64.99867 * 17 16 14 21 21 C 1.53002 * 109.47261 * 179.97438 * 20 17 16 22 22 C 1.50701 * 109.47172 * 179.97438 * 21 20 17 23 23 O 1.20828 * 119.99661 * 0.02562 * 22 21 20 24 24 O 1.34223 * 119.99874 * 180.02562 * 22 21 20 25 25 C 1.39034 * 119.94996 * 0.02562 * 13 12 11 26 26 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97837 * 0.04262 * 10 9 7 28 28 H 1.07995 * 119.79331 * 179.97438 * 11 10 9 29 29 H 1.08006 * 119.82239 * 179.97438 * 12 11 10 30 30 H 0.96996 * 120.00432 * 359.97438 * 16 14 13 31 31 H 1.08997 * 109.46935 * 299.99957 * 20 17 16 32 32 H 1.09001 * 109.46873 * 60.00358 * 20 17 16 33 33 H 1.08996 * 109.47158 * 300.00487 * 21 20 17 34 34 H 1.09001 * 109.46729 * 60.00461 * 21 20 17 35 35 H 0.96708 * 116.99896 * 180.02562 * 24 22 21 36 36 H 1.07998 * 120.20058 * 179.73120 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1036 -1.3955 5 1 1.4928 2.6221 0.7968 6 1 3.5859 1.4136 0.5985 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3518 -2.4074 -0.3745 10 6 1.8266 -3.6500 0.0869 11 6 1.1860 -4.8123 -0.2805 12 6 0.0739 -4.7693 -1.1027 13 6 -0.4130 -3.5441 -1.5699 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0254 -2.4417 -2.8533 16 7 -2.2176 -4.6535 -2.7984 17 16 -3.5491 -4.6118 -3.7820 18 8 -3.9326 -5.9740 -3.9109 19 8 -4.4100 -3.6636 -3.1664 20 6 -2.9254 -3.9739 -5.3615 21 6 -4.0756 -3.8883 -6.3669 22 6 -3.5576 -3.3577 -7.6788 23 8 -2.3883 -3.0774 -7.7976 24 8 -4.3951 -3.1967 -8.7153 25 6 0.2223 -2.3614 -1.2084 26 1 -0.4850 0.8401 0.0004 27 1 2.6937 -3.6916 0.7294 28 1 1.5539 -5.7632 0.0754 29 1 -0.4210 -5.6868 -1.3852 30 1 -1.8799 -5.5034 -2.4752 31 1 -2.5001 -2.9818 -5.2101 32 1 -2.1566 -4.6442 -5.7458 33 1 -4.5006 -4.8805 -6.5181 34 1 -4.8447 -3.2182 -5.9827 35 1 -4.0165 -2.8538 -9.5365 36 1 -0.1476 -1.4135 -1.5704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:14 Heat of formation + Delta-G solvation = -184.897317 kcal Electronic energy + Delta-G solvation = -25045.790721 eV Core-core repulsion = 21007.883258 eV Total energy + Delta-G solvation = -4037.907464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56208 -39.74971 -37.40467 -37.06051 -36.55713 -36.12317 -34.35641 -33.73917 -33.65396 -30.27498 -29.60702 -26.30426 -25.48576 -23.63578 -21.63999 -21.16075 -20.37599 -19.48829 -18.68672 -18.25790 -17.83581 -16.97708 -16.80110 -16.31985 -16.06089 -15.55169 -15.25373 -14.80565 -14.62397 -14.37085 -14.17324 -13.74995 -13.45419 -13.04984 -12.90186 -12.70801 -12.50666 -12.25235 -12.11697 -12.01994 -11.83711 -11.79598 -11.30609 -11.21939 -11.19764 -10.95124 -10.85815 -10.61769 -10.47803 -10.33185 -9.84454 -9.50835 -9.33155 -7.85358 -7.67370 -6.91597 -4.53262 -0.05977 1.78330 1.84782 2.33895 2.66695 2.68928 3.02216 3.05687 3.06207 3.32423 3.60322 3.84000 3.93238 4.06084 4.43897 4.47537 4.70563 4.91250 5.04025 5.10737 5.34758 5.44360 5.52452 5.91646 6.12065 6.13607 6.52538 6.72617 6.85079 6.97051 7.08172 7.20244 7.52705 7.53709 7.61352 7.80992 7.98794 8.11372 8.35513 8.67492 8.69200 10.03172 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003502 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.470207 B = 7992.991978 C = 9137.560601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.217 4.217 13 C -0.135 4.135 14 C 0.584 3.416 15 O -0.502 6.502 16 N -1.051 6.051 17 S 2.604 3.396 18 O -0.950 6.950 19 O -0.923 6.923 20 C -0.623 4.623 21 C -0.104 4.104 22 C 0.488 3.512 23 O -0.504 6.504 24 O -0.516 6.516 25 C -0.085 4.085 26 H 0.287 0.713 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.433 0.567 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.414 0.586 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -7.118 -11.418 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.226 4.226 11 C -0.113 4.113 12 C -0.237 4.237 13 C -0.140 4.140 14 C 0.377 3.623 15 O -0.376 6.376 16 N -0.818 5.818 17 S 2.697 3.303 18 O -0.940 6.940 19 O -0.914 6.914 20 C -0.751 4.751 21 C -0.142 4.142 22 C 0.328 3.672 23 O -0.391 6.391 24 O -0.328 6.328 25 C -0.105 4.105 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.271 0.729 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.273 0.727 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.357 -6.482 -11.101 14.811 hybrid contribution 1.328 0.666 -0.695 1.640 sum -6.029 -5.815 -11.796 14.467 Atomic orbital electron populations 1.69770 1.07613 1.30090 1.32965 1.25997 0.94809 1.01719 0.92218 0.86221 0.80460 0.80301 0.79370 1.19137 1.20089 1.18453 1.19640 0.98341 0.90948 1.39507 0.89826 1.17603 0.91111 0.92613 0.89254 1.21153 1.03396 0.92677 1.05337 1.20451 0.95803 0.96952 0.98069 1.20340 1.01383 0.94477 1.07542 1.19286 0.96200 0.95864 1.02669 1.18896 0.83189 0.81334 0.78912 1.90860 1.64534 1.28455 1.53789 1.54919 1.48642 1.17249 1.60994 1.05379 0.73886 0.74618 0.76423 1.93634 1.80251 1.33372 1.86742 1.93671 1.61991 1.63751 1.71943 1.30539 1.09126 1.16704 1.18735 1.20937 0.98092 1.05477 0.89743 1.22939 0.84123 0.74604 0.85521 1.90778 1.18484 1.46484 1.83321 1.84504 1.45232 1.78836 1.24238 1.21705 0.96259 0.96268 0.96283 0.90178 0.88329 0.88517 0.88853 0.72853 0.82578 0.83794 0.85934 0.85694 0.72711 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.85 10.95 55.55 0.61 -19.25 16 2 C 0.07 1.75 5.14 -17.35 -0.09 1.66 16 3 Si 0.91 18.08 29.60 -169.99 -5.03 13.05 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.40 9.05 -37.73 -0.34 -11.74 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.10 2.42 5.57 -106.87 -0.60 1.83 16 10 C -0.21 -4.59 9.78 -38.81 -0.38 -4.97 16 11 C -0.09 -1.88 10.01 -39.73 -0.40 -2.27 16 12 C -0.22 -4.21 9.55 -38.92 -0.37 -4.59 16 13 C -0.13 -2.95 5.87 -105.04 -0.62 -3.57 16 14 C 0.58 11.53 7.51 -12.31 -0.09 11.43 16 15 O -0.50 -11.10 14.43 -11.81 -0.17 -11.27 16 16 N -1.05 -15.69 5.55 30.54 0.17 -15.52 16 17 S 2.60 35.16 5.11 -107.50 -0.55 34.61 16 18 O -0.95 -13.16 18.08 -57.54 -1.04 -14.20 16 19 O -0.92 -16.19 17.04 -64.79 -1.10 -17.29 16 20 C -0.62 -7.03 5.17 37.16 0.19 -6.84 16 21 C -0.10 -0.94 5.82 -27.88 -0.16 -1.10 16 22 C 0.49 4.98 8.33 36.01 0.30 5.28 16 23 O -0.50 -6.98 16.74 -18.75 -0.31 -7.29 16 24 O -0.52 -3.78 13.42 -39.24 -0.53 -4.30 16 25 C -0.08 -2.13 8.23 -38.44 -0.32 -2.44 16 26 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 27 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.09 1.43 6.38 -52.48 -0.33 1.10 16 30 H 0.43 5.25 6.81 -34.46 -0.23 5.02 16 31 H 0.16 2.06 7.15 -51.93 -0.37 1.69 16 32 H 0.14 1.36 8.10 -51.92 -0.42 0.94 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.41 1.34 9.10 45.56 0.41 1.76 16 36 H 0.14 3.67 5.74 -52.49 -0.30 3.37 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -34.48 334.15 -8.28 -42.76 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -2.49 Total: 10.98 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.87 Total: -17.31 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.78 Total: -34.77 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -3.16 Total: -54.36 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 35.16 SS G_CDS: -0.55 Total: 34.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.48 -8.28 -42.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.139 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds