Wall clock time and date at job start Tue Mar 31 2020 15:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48505 * 109.46701 * 274.69105 * 3 2 1 5 5 H 1.48499 * 109.47242 * 34.69115 * 3 2 1 6 6 H 1.48500 * 109.47130 * 154.69460 * 3 2 1 7 7 C 1.39935 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99779 * 197.84522 * 7 2 1 9 9 C 1.41431 * 120.00286 * 17.85570 * 7 2 1 10 10 C 1.40794 * 120.17844 * 204.41145 * 9 7 2 11 11 C 1.37704 * 120.04069 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41250 * 359.97438 * 11 10 9 13 13 C 1.39877 * 120.35867 * 359.97438 * 12 11 10 14 14 C 1.47888 * 120.02563 * 180.02562 * 13 12 11 15 15 O 1.21550 * 119.99912 * 179.97438 * 14 13 12 16 16 N 1.34771 * 119.99899 * 359.97438 * 14 13 12 17 17 S 1.65599 * 119.99932 * 180.02562 * 16 14 13 18 18 O 1.42102 * 104.28011 * 181.07042 * 17 16 14 19 19 O 1.42096 * 104.27957 * 308.92718 * 17 16 14 20 20 C 1.81403 * 104.45155 * 64.99867 * 17 16 14 21 21 C 1.53002 * 109.47261 * 179.97438 * 20 17 16 22 22 C 1.50701 * 109.47172 * 179.97438 * 21 20 17 23 23 O 1.20828 * 119.99661 * 0.02562 * 22 21 20 24 24 O 1.34223 * 119.99874 * 180.02562 * 22 21 20 25 25 C 1.39034 * 119.94996 * 0.02562 * 13 12 11 26 26 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97837 * 0.04262 * 10 9 7 28 28 H 1.07995 * 119.79331 * 179.97438 * 11 10 9 29 29 H 1.08006 * 119.82239 * 179.97438 * 12 11 10 30 30 H 0.96996 * 120.00432 * 359.97438 * 16 14 13 31 31 H 1.08997 * 109.46935 * 299.99957 * 20 17 16 32 32 H 1.09001 * 109.46873 * 60.00358 * 20 17 16 33 33 H 1.08996 * 109.47158 * 300.00487 * 21 20 17 34 34 H 1.09001 * 109.46729 * 60.00461 * 21 20 17 35 35 H 0.96708 * 116.99896 * 180.02562 * 24 22 21 36 36 H 1.07998 * 120.20058 * 179.73120 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1036 -1.3955 5 1 1.4928 2.6221 0.7968 6 1 3.5859 1.4136 0.5985 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3518 -2.4074 -0.3745 10 6 1.8266 -3.6500 0.0869 11 6 1.1860 -4.8123 -0.2805 12 6 0.0739 -4.7693 -1.1027 13 6 -0.4130 -3.5441 -1.5699 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0254 -2.4417 -2.8533 16 7 -2.2176 -4.6535 -2.7984 17 16 -3.5491 -4.6118 -3.7820 18 8 -3.9326 -5.9740 -3.9109 19 8 -4.4100 -3.6636 -3.1664 20 6 -2.9254 -3.9739 -5.3615 21 6 -4.0756 -3.8883 -6.3669 22 6 -3.5576 -3.3577 -7.6788 23 8 -2.3883 -3.0774 -7.7976 24 8 -4.3951 -3.1967 -8.7153 25 6 0.2223 -2.3614 -1.2084 26 1 -0.4850 0.8401 0.0004 27 1 2.6937 -3.6916 0.7294 28 1 1.5539 -5.7632 0.0754 29 1 -0.4210 -5.6868 -1.3852 30 1 -1.8799 -5.5034 -2.4752 31 1 -2.5001 -2.9818 -5.2101 32 1 -2.1566 -4.6442 -5.7458 33 1 -4.5006 -4.8805 -6.5181 34 1 -4.8447 -3.2182 -5.9827 35 1 -4.0165 -2.8538 -9.5365 36 1 -0.1476 -1.4135 -1.5704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:13 Heat of formation + Delta-G solvation = -211.547427 kcal Electronic energy + Delta-G solvation = -25046.946357 eV Core-core repulsion = 21007.883258 eV Total energy + Delta-G solvation = -4039.063099 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34531 -41.31133 -39.00152 -38.34824 -37.33958 -37.27700 -35.90158 -35.33165 -34.55093 -31.99114 -31.32494 -27.31069 -27.12388 -25.21180 -22.90071 -22.38885 -21.92621 -20.69832 -19.85232 -19.53917 -18.97100 -18.16033 -17.85138 -17.50488 -17.11568 -17.08775 -16.60483 -16.35640 -16.05146 -15.95889 -15.17651 -15.07418 -14.68970 -14.52579 -14.34044 -13.85481 -13.68902 -13.51619 -13.47144 -13.31641 -12.98926 -12.83328 -12.78795 -12.61612 -12.56949 -12.34229 -12.21199 -12.04273 -11.91725 -11.68752 -11.53411 -11.14610 -11.09801 -9.58646 -9.42197 -8.68409 -6.39247 -1.16678 0.11946 0.98378 1.08352 1.16114 1.37782 1.45649 1.51834 1.73461 1.97676 2.18746 2.50271 2.72907 2.96886 3.07572 3.43801 3.64729 3.66292 3.94994 4.07737 4.29140 4.40506 4.42248 4.56326 4.63420 4.86077 5.05042 5.13594 5.28318 5.46614 5.52688 5.59040 5.82748 5.91726 6.03727 6.26293 6.51787 6.57221 6.86985 6.89274 6.91021 8.28475 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003502 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.470207 B = 7992.991978 C = 9137.560601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.494 4.494 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.209 4.209 11 C -0.095 4.095 12 C -0.195 4.195 13 C -0.147 4.147 14 C 0.590 3.410 15 O -0.533 6.533 16 N -1.038 6.038 17 S 2.621 3.379 18 O -0.946 6.946 19 O -0.965 6.965 20 C -0.610 4.610 21 C -0.115 4.115 22 C 0.495 3.505 23 O -0.548 6.548 24 O -0.506 6.506 25 C -0.124 4.124 26 H 0.288 0.712 27 H 0.110 0.890 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.447 0.553 31 H 0.136 0.864 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.139 0.861 35 H 0.432 0.568 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 -9.604 -12.392 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.523 4.523 8 H 0.103 0.897 9 C 0.063 3.937 10 C -0.229 4.229 11 C -0.113 4.113 12 C -0.214 4.214 13 C -0.152 4.152 14 C 0.381 3.619 15 O -0.409 6.409 16 N -0.804 5.804 17 S 2.717 3.283 18 O -0.937 6.937 19 O -0.956 6.956 20 C -0.741 4.741 21 C -0.153 4.153 22 C 0.337 3.663 23 O -0.439 6.439 24 O -0.320 6.320 25 C -0.145 4.145 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.288 0.712 31 H 0.155 0.845 32 H 0.184 0.816 33 H 0.176 0.824 34 H 0.157 0.843 35 H 0.294 0.706 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.627 -9.029 -12.057 16.884 hybrid contribution 1.313 1.167 -0.521 1.833 sum -6.314 -7.862 -12.578 16.120 Atomic orbital electron populations 1.69865 1.09158 1.30742 1.35154 1.26810 0.95379 1.04852 0.91339 0.85203 0.79398 0.76040 0.79196 1.19188 1.19508 1.17426 1.19883 0.98654 0.92123 1.41678 0.89712 1.17941 0.91806 0.93954 0.90007 1.21473 1.03703 0.92753 1.04969 1.20952 0.95260 0.97875 0.97212 1.20948 1.00378 0.95234 1.04854 1.19596 0.96792 0.95987 1.02853 1.18606 0.82793 0.82027 0.78438 1.90850 1.65284 1.30066 1.54672 1.54684 1.48202 1.16379 1.61124 1.04849 0.72887 0.73949 0.76616 1.93635 1.79993 1.33136 1.86886 1.93628 1.63379 1.64875 1.73687 1.30353 1.10520 1.15816 1.17389 1.21183 0.97416 1.08023 0.88692 1.23044 0.83526 0.73525 0.86160 1.90774 1.20313 1.48636 1.84129 1.84464 1.44527 1.78318 1.24688 1.21526 0.97991 0.96438 0.98504 0.90166 0.87193 0.84042 0.83823 0.71247 0.84547 0.81638 0.82369 0.84264 0.70565 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.56 10.95 21.82 0.24 -44.32 16 2 C 0.03 1.59 5.14 85.25 0.44 2.03 16 3 Si 0.98 38.59 29.60 68.60 2.03 40.62 16 4 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 7 C -0.49 -25.89 9.05 23.47 0.21 -25.67 16 8 H 0.08 4.20 7.91 -2.91 -0.02 4.17 16 9 C 0.07 3.37 5.57 -21.32 -0.12 3.26 16 10 C -0.21 -9.20 9.78 22.77 0.22 -8.98 16 11 C -0.10 -3.47 10.01 22.18 0.22 -3.25 16 12 C -0.19 -6.94 9.55 22.70 0.22 -6.73 16 13 C -0.15 -6.41 5.87 -20.13 -0.12 -6.53 16 14 C 0.59 23.17 7.51 86.80 0.65 23.82 16 15 O -0.53 -24.34 14.43 12.51 0.18 -24.16 16 16 N -1.04 -29.01 5.55 -175.58 -0.98 -29.98 16 17 S 2.62 66.23 5.11 -56.49 -0.29 65.94 16 18 O -0.95 -23.36 18.08 -127.65 -2.31 -25.67 16 19 O -0.97 -33.41 17.04 -120.72 -2.06 -35.47 16 20 C -0.61 -12.78 5.17 71.98 0.37 -12.41 16 21 C -0.11 -1.79 5.82 29.85 0.17 -1.62 16 22 C 0.50 9.19 8.33 71.24 0.59 9.79 16 23 O -0.55 -14.71 16.74 21.96 0.37 -14.35 16 24 O -0.51 -6.18 13.42 -51.35 -0.69 -6.87 16 25 C -0.12 -6.48 8.23 23.01 0.19 -6.29 16 26 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 27 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 29 H 0.14 3.62 6.38 -2.91 -0.02 3.60 16 30 H 0.45 9.28 6.81 -96.75 -0.66 8.62 16 31 H 0.14 3.60 7.15 -2.39 -0.02 3.58 16 32 H 0.17 2.73 8.10 -2.39 -0.02 2.71 16 33 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.43 1.84 9.10 -74.05 -0.67 1.17 16 36 H 0.11 6.09 5.74 -2.91 -0.02 6.08 16 Total: -1.00 -79.07 334.15 -0.61 -79.67 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.16 Total: 27.16 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 3.06 Total: -32.57 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -0.74 Total: -74.30 kcal Atomic # 8 Polarization: -102.01 SS G_CDS: -4.51 Total: -106.52 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 16 Polarization: 66.23 SS G_CDS: -0.29 Total: 65.94 kcal Total: -79.07 -0.61 -79.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.874 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds