Wall clock time and date at job start Tue Mar 31 2020 15:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48501 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46901 * 300.00298 * 3 2 1 6 6 H 1.48493 * 109.47334 * 60.00189 * 3 2 1 7 7 C 1.37880 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99487 * 188.48086 * 7 2 1 9 9 C 1.50693 * 120.00116 * 8.74999 * 7 2 1 10 10 C 1.53004 * 115.55063 * 273.43293 * 9 7 2 11 11 S 1.81404 * 109.47038 * 305.78649 * 10 9 7 12 12 O 1.42099 * 110.54350 * 289.36024 * 11 10 9 13 13 O 1.42097 * 110.54126 * 66.11175 * 11 10 9 14 14 O 1.52200 * 104.44849 * 177.73694 * 11 10 9 15 15 C 1.35633 * 113.99897 * 73.99598 * 14 11 10 16 16 C 1.39350 * 120.54598 * 275.48055 * 15 14 11 17 17 C 1.38289 * 118.44243 * 179.97438 * 16 15 14 18 18 C 1.38800 * 119.45377 * 0.02562 * 17 16 15 19 19 N 1.31357 * 121.07264 * 359.97438 * 18 17 16 20 20 C 1.32898 * 121.69488 * 359.73212 * 19 18 17 21 21 C 1.47702 * 119.79219 * 180.28649 * 20 19 18 22 22 O 1.21474 * 120.00423 * 179.32923 * 21 20 19 23 23 O 1.34725 * 120.00054 * 359.32959 * 21 20 19 24 24 C 1.53001 * 117.49805 * 127.76644 * 9 7 2 25 25 C 1.52999 * 117.50300 * 59.10590 * 9 7 2 26 26 H 0.97000 * 119.99858 * 5.03900 * 1 2 3 27 27 H 1.08995 * 109.46716 * 65.78559 * 10 9 7 28 28 H 1.09001 * 109.46791 * 185.79026 * 10 9 7 29 29 H 1.08005 * 120.77805 * 0.02562 * 16 15 14 30 30 H 1.07996 * 120.27623 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.46417 * 179.97438 * 18 17 16 32 32 H 0.96696 * 117.00412 * 179.97438 * 23 21 20 33 33 H 1.09001 * 117.49949 * 359.97438 * 24 9 7 34 34 H 1.08999 * 117.49853 * 145.01855 * 24 9 7 35 35 H 1.08995 * 117.50344 * 214.98096 * 25 9 7 36 36 H 1.09007 * 117.49106 * 359.97319 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0756 -1.1993 0.1374 9 6 1.2641 -2.4915 -0.1996 10 6 0.6871 -3.1234 1.0688 11 16 2.0049 -3.3192 2.3000 12 8 2.9109 -4.3393 1.9027 13 8 2.4747 -2.0502 2.7336 14 8 1.3018 -3.8962 3.5203 15 6 0.9600 -5.2027 3.3937 16 6 -0.2295 -5.5658 2.7652 17 6 -0.5347 -6.9105 2.6595 18 6 0.3432 -7.8524 3.1777 19 7 1.4593 -7.4873 3.7663 20 6 1.7990 -6.2082 3.8870 21 6 3.0674 -5.8452 4.5512 22 8 3.3875 -4.6778 4.6527 23 8 3.8693 -6.8089 5.0443 24 6 1.7739 -3.4356 -1.2903 25 6 0.4704 -2.6602 -1.4968 26 1 -0.4850 0.8368 -0.0738 27 1 -0.0944 -2.4796 1.4722 28 1 0.2660 -4.0997 0.8289 29 1 -0.8971 -4.8148 2.3692 30 1 -1.4490 -7.2251 2.1785 31 1 0.1048 -8.9026 3.0956 32 1 4.6891 -6.5227 5.4700 33 1 2.6447 -3.1182 -1.8641 34 1 1.6980 -4.5070 -1.1043 35 1 -0.4625 -3.2215 -1.4467 36 1 0.4835 -1.8324 -2.2060 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608178219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:30 Heat of formation + Delta-G solvation = -146.954418 kcal Electronic energy + Delta-G solvation = -26849.789914 eV Core-core repulsion = 22813.527778 eV Total energy + Delta-G solvation = -4036.262136 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.84328 -40.94979 -40.13808 -38.62741 -38.18321 -37.28214 -37.04173 -34.12184 -33.88053 -32.22147 -30.13815 -27.58540 -26.80892 -25.33104 -23.33692 -22.99126 -22.20479 -21.21219 -19.75875 -19.53930 -18.89534 -18.85599 -18.52240 -17.97715 -17.09272 -16.94135 -16.76157 -16.39238 -16.12504 -15.67129 -15.14971 -15.02715 -14.85174 -14.61186 -14.27586 -13.93103 -13.79442 -13.73777 -13.51488 -13.28430 -13.13267 -13.02392 -12.86417 -12.77670 -12.48131 -12.25492 -12.18916 -11.95550 -11.63700 -11.25986 -10.95178 -10.85915 -10.56887 -10.46011 -9.99456 -8.26233 -6.38532 -1.23870 -0.63227 -0.15240 1.12517 1.18565 1.32518 1.38716 1.48298 1.62562 2.38517 2.40568 2.73347 2.96585 3.01361 3.04051 3.26156 3.37213 3.47071 3.72113 3.85426 3.88682 4.11475 4.30413 4.44478 4.52636 4.59488 4.70782 4.75660 4.80260 4.96935 5.16814 5.28155 5.34485 5.38375 5.60414 5.67905 6.15701 6.36682 6.67516 6.76703 7.35655 8.82371 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.004978 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.710034 B = 5623.506712 C = 6405.739403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.048 3.952 3 Si 0.927 3.073 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.043 0.957 9 C 0.002 3.998 10 C -0.566 4.566 11 S 2.598 3.402 12 O -0.985 6.985 13 O -0.961 6.961 14 O -0.668 6.668 15 C 0.057 3.943 16 C -0.115 4.115 17 C -0.081 4.081 18 C 0.113 3.887 19 N -0.430 5.430 20 C 0.079 3.921 21 C 0.535 3.465 22 O -0.534 6.534 23 O -0.480 6.480 24 C -0.193 4.193 25 C -0.125 4.125 26 H 0.267 0.733 27 H 0.136 0.864 28 H 0.149 0.851 29 H 0.188 0.812 30 H 0.221 0.779 31 H 0.232 0.768 32 H 0.434 0.566 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -19.496 4.342 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.155 4.155 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.186 1.186 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.000 4.000 10 C -0.698 4.698 11 S 2.700 3.300 12 O -0.983 6.983 13 O -0.959 6.959 14 O -0.625 6.625 15 C 0.012 3.988 16 C -0.141 4.141 17 C -0.100 4.100 18 C -0.049 4.049 19 N -0.143 5.143 20 C -0.058 4.058 21 C 0.378 3.622 22 O -0.424 6.424 23 O -0.292 6.292 24 C -0.231 4.231 25 C -0.164 4.164 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.167 0.833 29 H 0.206 0.794 30 H 0.238 0.762 31 H 0.248 0.752 32 H 0.296 0.704 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.822 -19.592 5.159 21.080 hybrid contribution 0.457 2.702 -0.105 2.742 sum -5.365 -16.890 5.054 18.428 Atomic orbital electron populations 1.70010 1.06315 1.28005 1.47962 1.25417 0.95630 1.01383 0.93117 0.85977 0.79548 0.80966 0.78241 1.20127 1.18637 1.20688 1.20736 0.93080 0.91252 1.52458 0.93916 1.18342 1.01450 0.94409 0.85836 1.30143 1.16349 1.09640 1.13661 1.05295 0.77053 0.73301 0.74352 1.93468 1.63413 1.58223 1.83222 1.93507 1.79103 1.43818 1.79490 1.85797 1.82563 1.30511 1.63628 1.19605 0.97452 0.78427 1.03310 1.22619 0.93235 1.01487 0.96778 1.23178 1.02389 0.89580 0.94836 1.24212 0.86838 1.04028 0.89811 1.67879 1.19431 1.13626 1.13374 1.20119 0.93353 0.90474 1.01852 1.20561 0.83844 0.82757 0.75020 1.90955 1.73811 1.21845 1.55752 1.84575 1.36162 1.38987 1.69523 1.23288 0.98527 0.97112 1.04125 1.22520 0.93885 1.00590 0.99370 0.92352 0.84621 0.83272 0.79438 0.76214 0.75183 0.70395 0.90029 0.87739 0.88247 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.71 12.93 21.45 0.28 -48.44 16 2 C 0.05 2.69 5.36 84.66 0.45 3.14 16 3 Si 0.93 45.46 29.55 68.60 2.03 47.49 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.54 -30.46 7.17 25.60 0.18 -30.28 16 8 H 0.04 2.57 7.83 -2.91 -0.02 2.55 16 9 C 0.00 0.08 1.48 -52.93 -0.08 0.00 16 10 C -0.57 -22.92 5.14 71.98 0.37 -22.55 16 11 S 2.60 121.99 4.28 -56.49 -0.24 121.75 16 12 O -0.98 -47.07 15.45 -116.73 -1.80 -48.88 16 13 O -0.96 -55.59 16.91 -118.57 -2.00 -57.60 16 14 O -0.67 -27.45 8.42 -55.56 -0.47 -27.92 16 15 C 0.06 1.83 4.75 22.95 0.11 1.94 16 16 C -0.11 -2.23 8.49 22.55 0.19 -2.03 16 17 C -0.08 -0.76 10.10 22.42 0.23 -0.53 16 18 C 0.11 1.34 11.17 84.90 0.95 2.29 16 19 N -0.43 -10.11 10.11 -184.66 -1.87 -11.98 16 20 C 0.08 2.50 6.30 41.90 0.26 2.77 16 21 C 0.54 18.98 7.86 70.32 0.55 19.53 16 22 O -0.53 -23.33 14.73 28.73 0.42 -22.91 16 23 O -0.48 -12.37 13.24 -56.35 -0.75 -13.12 16 24 C -0.19 -7.79 9.92 30.62 0.30 -7.49 16 25 C -0.12 -5.16 9.45 30.62 0.29 -4.87 16 26 H 0.27 13.86 8.32 -92.71 -0.77 13.09 16 27 H 0.14 5.61 8.14 -2.39 -0.02 5.59 16 28 H 0.15 4.32 6.25 -2.39 -0.01 4.30 16 29 H 0.19 2.74 7.02 -2.91 -0.02 2.72 16 30 H 0.22 -0.49 8.06 -2.91 -0.02 -0.52 16 31 H 0.23 0.22 8.06 -2.91 -0.02 0.19 16 32 H 0.43 6.74 9.11 -74.06 -0.67 6.06 16 33 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -89.58 329.52 -0.12 -89.69 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.47 Total: 9.97 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.82 Total: -38.07 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -1.59 Total: -60.41 kcal Atomic # 8 Polarization: -165.82 SS G_CDS: -4.60 Total: -170.42 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 121.99 SS G_CDS: -0.24 Total: 121.75 kcal Total: -89.58 -0.12 -89.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.262 kcal (2) G-P(sol) polarization free energy of solvation -89.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds