Wall clock time and date at job start Tue Mar 31 2020 15:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48499 * 109.47258 * 273.53543 * 3 2 1 5 5 H 1.48503 * 109.47155 * 33.53354 * 3 2 1 6 6 H 1.48501 * 109.47220 * 153.52870 * 3 2 1 7 7 C 1.37881 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99877 * 351.99439 * 7 2 1 9 9 C 1.50696 * 119.99689 * 172.27730 * 7 2 1 10 10 C 1.53001 * 115.55046 * 294.13640 * 9 7 2 11 11 S 1.81405 * 109.47386 * 294.60291 * 10 9 7 12 12 O 1.42102 * 110.53711 * 296.60290 * 11 10 9 13 13 O 1.42098 * 110.54338 * 73.35186 * 11 10 9 14 14 O 1.52202 * 104.44973 * 184.98029 * 11 10 9 15 15 C 1.35651 * 114.00112 * 70.94978 * 14 11 10 16 16 C 1.38956 * 120.58005 * 275.41686 * 15 14 11 17 17 N 1.31627 * 120.79400 * 179.97438 * 16 15 14 18 18 C 1.31906 * 122.15881 * 0.02562 * 17 16 15 19 19 C 1.37953 * 121.08577 * 0.02562 * 18 17 16 20 20 C 1.40007 * 119.06530 * 359.65689 * 19 18 17 21 21 C 1.47710 * 120.97268 * 180.34317 * 20 19 18 22 22 O 1.21477 * 120.00174 * 185.47862 * 21 20 19 23 23 O 1.34712 * 120.00228 * 5.47280 * 21 20 19 24 24 C 1.53000 * 117.49790 * 148.47461 * 9 7 2 25 25 C 1.52995 * 117.50334 * 79.81242 * 9 7 2 26 26 H 0.97002 * 120.00137 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47006 * 54.60060 * 10 9 7 28 28 H 1.09001 * 109.47117 * 174.59921 * 10 9 7 29 29 H 1.08001 * 119.60816 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.45717 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.46700 * 179.97438 * 19 18 17 32 32 H 0.96696 * 117.00379 * 180.02562 * 23 21 20 33 33 H 1.09001 * 117.49623 * 359.97438 * 24 9 7 34 34 H 1.08993 * 117.50203 * 145.01614 * 24 9 7 35 35 H 1.08990 * 117.50419 * 214.97551 * 25 9 7 36 36 H 1.09001 * 117.49589 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4218 2.0896 -1.3974 5 1 1.4859 2.6300 0.7734 6 1 3.5820 1.4198 0.6241 7 6 2.0046 -1.1941 -0.0005 8 1 1.4725 -2.1248 0.1293 9 6 3.5013 -1.1998 -0.1759 10 6 4.0078 -0.7232 -1.5387 11 16 3.4686 -1.8841 -2.8241 12 8 4.0465 -3.1650 -2.6131 13 8 2.0772 -1.7402 -3.0741 14 8 4.1330 -1.3775 -4.0963 15 6 5.4758 -1.5665 -4.1304 16 6 6.3342 -0.6488 -3.5373 17 7 7.6378 -0.8283 -3.5675 18 6 8.1893 -1.8731 -4.1541 19 6 7.4155 -2.8351 -4.7698 20 6 6.0224 -2.6957 -4.7607 21 6 5.1534 -3.7044 -5.4004 22 8 3.9551 -3.5175 -5.4698 23 8 5.6897 -4.8316 -5.9070 24 6 4.2901 -2.3093 0.5223 25 6 4.3575 -0.8738 1.0494 26 1 -0.4850 0.8400 0.0004 27 1 3.6038 0.2667 -1.7506 28 1 5.0967 -0.6759 -1.5254 29 1 5.9269 0.2219 -3.0449 30 1 9.2643 -1.9768 -4.1532 31 1 7.8776 -3.6863 -5.2475 32 1 5.0812 -5.4618 -6.3162 33 1 3.7265 -3.0349 1.1088 34 1 5.1701 -2.6994 0.0110 35 1 5.2817 -0.3202 0.8848 36 1 3.8381 -0.6548 1.9824 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:46 Heat of formation + Delta-G solvation = -111.866451 kcal Electronic energy + Delta-G solvation = -27021.748086 eV Core-core repulsion = 22987.007478 eV Total energy + Delta-G solvation = -4034.740608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82906 -39.92772 -39.18330 -37.20358 -36.57568 -36.28205 -35.41152 -33.21112 -32.23635 -31.20441 -28.81730 -26.04597 -25.62116 -24.38556 -22.37480 -21.72127 -20.88991 -19.33943 -18.79772 -18.24022 -17.85835 -17.59525 -17.17215 -16.58570 -15.84076 -15.79775 -15.35864 -15.31181 -14.89996 -14.34573 -14.24899 -13.94584 -13.69788 -13.28236 -13.22854 -12.71917 -12.47068 -12.43660 -12.14440 -11.84190 -11.54066 -11.45162 -11.28483 -11.11334 -10.89227 -10.80121 -10.57344 -10.43161 -10.25087 -10.12571 -9.64491 -9.57350 -9.19370 -8.80939 -8.49215 -6.20104 -4.26866 -0.14962 0.24351 0.86361 2.22775 2.38371 2.52421 3.13657 3.16180 3.28227 3.33188 3.84049 3.97842 4.10656 4.22434 4.30828 4.38328 4.48982 4.66737 4.72975 4.94196 5.03320 5.21062 5.23208 5.35231 5.41900 5.70355 5.78912 5.95258 6.10834 6.14776 6.17969 6.40911 6.54107 6.79576 7.02391 7.22969 7.53913 7.57585 8.34437 8.84620 9.40446 10.91196 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.005469 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.840668 B = 5118.870770 C = 5701.945471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.092 3.908 3 Si 0.850 3.150 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.514 4.514 8 H 0.087 0.913 9 C 0.003 3.997 10 C -0.609 4.609 11 S 2.596 3.404 12 O -0.957 6.957 13 O -0.885 6.885 14 O -0.660 6.660 15 C 0.093 3.907 16 C 0.084 3.916 17 N -0.432 5.432 18 C 0.097 3.903 19 C -0.099 4.099 20 C -0.062 4.062 21 C 0.529 3.471 22 O -0.478 6.478 23 O -0.507 6.507 24 C -0.179 4.179 25 C -0.173 4.173 26 H 0.269 0.731 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.421 0.579 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.815 -4.111 -10.137 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.114 4.114 3 Si 0.676 3.324 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.551 4.551 8 H 0.105 0.895 9 C 0.000 4.000 10 C -0.738 4.738 11 S 2.693 3.307 12 O -0.956 6.956 13 O -0.883 6.883 14 O -0.615 6.615 15 C 0.047 3.953 16 C -0.076 4.076 17 N -0.143 5.143 18 C -0.060 4.060 19 C -0.119 4.119 20 C -0.073 4.073 21 C 0.370 3.630 22 O -0.364 6.364 23 O -0.320 6.320 24 C -0.216 4.216 25 C -0.212 4.212 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.201 0.799 30 H 0.196 0.804 31 H 0.183 0.817 32 H 0.281 0.719 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.569 -3.521 -10.104 21.432 hybrid contribution -0.599 0.515 -0.271 0.836 sum 17.970 -3.006 -10.375 20.967 Atomic orbital electron populations 1.69886 1.06386 1.27464 1.46890 1.24922 0.94500 0.98944 0.93037 0.87235 0.82320 0.83990 0.78835 1.20104 1.20903 1.16511 1.20332 0.86213 0.95642 1.52904 0.89468 1.18753 0.94945 1.00584 0.85709 1.30744 1.09051 1.17100 1.16882 1.05622 0.75473 0.75863 0.73776 1.93528 1.78609 1.38830 1.84611 1.93658 1.27750 1.85762 1.81135 1.85907 1.24491 1.86444 1.64647 1.19282 0.80157 0.95110 1.00756 1.23432 0.88674 0.98306 0.97158 1.67668 1.11098 1.21281 1.14225 1.23047 1.01591 0.88871 0.92449 1.22583 0.91136 1.00699 0.97436 1.19642 0.94342 0.93073 1.00236 1.20218 0.86172 0.80819 0.75816 1.90995 1.15749 1.76823 1.52827 1.84451 1.46059 1.30523 1.70998 1.22998 1.01657 0.92005 1.04949 1.23081 1.00721 0.97547 0.99847 0.92120 0.85491 0.87121 0.79938 0.80385 0.81687 0.71891 0.88660 0.90133 0.90877 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.09 2.64 5.46 -17.82 -0.10 2.54 16 3 Si 0.85 20.34 25.11 -169.99 -4.27 16.08 16 4 H -0.27 -6.34 7.02 56.52 0.40 -5.94 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -5.23 5.63 56.52 0.32 -4.92 16 7 C -0.51 -14.38 8.69 -34.44 -0.30 -14.68 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.00 0.06 0.79 -155.66 -0.12 -0.06 16 10 C -0.61 -12.36 4.80 37.16 0.18 -12.19 16 11 S 2.60 57.72 4.54 -107.50 -0.49 57.23 16 12 O -0.96 -21.19 15.61 -68.28 -1.07 -22.26 16 13 O -0.88 -23.97 17.70 -67.04 -1.19 -25.16 16 14 O -0.66 -12.63 8.48 -53.98 -0.46 -13.09 16 15 C 0.09 1.44 4.81 -38.50 -0.19 1.26 16 16 C 0.08 1.07 9.31 -17.37 -0.16 0.91 16 17 N -0.43 -4.75 10.32 -13.17 -0.14 -4.89 16 18 C 0.10 0.78 11.16 -17.62 -0.20 0.59 16 19 C -0.10 -0.87 9.70 -39.02 -0.38 -1.25 16 20 C -0.06 -0.85 5.47 -104.55 -0.57 -1.42 16 21 C 0.53 7.69 7.72 34.60 0.27 7.96 16 22 O -0.48 -9.00 15.26 -27.60 -0.42 -9.42 16 23 O -0.51 -4.78 12.80 -40.53 -0.52 -5.30 16 24 C -0.18 -3.60 9.96 -26.69 -0.27 -3.86 16 25 C -0.17 -3.46 7.86 -26.70 -0.21 -3.67 16 26 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.13 2.56 5.27 -51.93 -0.27 2.29 16 28 H 0.11 1.74 5.70 -51.92 -0.30 1.44 16 29 H 0.18 1.98 6.87 -52.49 -0.36 1.62 16 30 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.17 0.88 7.72 -52.49 -0.41 0.48 16 32 H 0.42 2.15 9.11 45.56 0.42 2.56 16 33 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -38.26 320.94 -7.66 -45.92 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.68 Total: 5.80 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.04 Total: -23.88 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.64 Total: -30.75 kcal Atomic # 8 Polarization: -71.58 SS G_CDS: -3.65 Total: -75.23 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.27 Total: 16.08 kcal Atomic # 16 Polarization: 57.72 SS G_CDS: -0.49 Total: 57.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.26 -7.66 -45.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.948 kcal (2) G-P(sol) polarization free energy of solvation -38.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds