Wall clock time and date at job start Tue Mar 31 2020 15:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48499 * 109.47258 * 273.53543 * 3 2 1 5 5 H 1.48503 * 109.47155 * 33.53354 * 3 2 1 6 6 H 1.48501 * 109.47220 * 153.52870 * 3 2 1 7 7 C 1.37881 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99877 * 351.99439 * 7 2 1 9 9 C 1.50696 * 119.99689 * 172.27730 * 7 2 1 10 10 C 1.53001 * 115.55046 * 294.13640 * 9 7 2 11 11 S 1.81405 * 109.47386 * 294.60291 * 10 9 7 12 12 O 1.42102 * 110.53711 * 296.60290 * 11 10 9 13 13 O 1.42098 * 110.54338 * 73.35186 * 11 10 9 14 14 O 1.52202 * 104.44973 * 184.98029 * 11 10 9 15 15 C 1.35651 * 114.00112 * 70.94978 * 14 11 10 16 16 C 1.38956 * 120.58005 * 275.41686 * 15 14 11 17 17 N 1.31627 * 120.79400 * 179.97438 * 16 15 14 18 18 C 1.31906 * 122.15881 * 0.02562 * 17 16 15 19 19 C 1.37953 * 121.08577 * 0.02562 * 18 17 16 20 20 C 1.40007 * 119.06530 * 359.65689 * 19 18 17 21 21 C 1.47710 * 120.97268 * 180.34317 * 20 19 18 22 22 O 1.21477 * 120.00174 * 185.47862 * 21 20 19 23 23 O 1.34712 * 120.00228 * 5.47280 * 21 20 19 24 24 C 1.53000 * 117.49790 * 148.47461 * 9 7 2 25 25 C 1.52995 * 117.50334 * 79.81242 * 9 7 2 26 26 H 0.97002 * 120.00137 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47006 * 54.60060 * 10 9 7 28 28 H 1.09001 * 109.47117 * 174.59921 * 10 9 7 29 29 H 1.08001 * 119.60816 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.45717 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.46700 * 179.97438 * 19 18 17 32 32 H 0.96696 * 117.00379 * 180.02562 * 23 21 20 33 33 H 1.09001 * 117.49623 * 359.97438 * 24 9 7 34 34 H 1.08993 * 117.50203 * 145.01614 * 24 9 7 35 35 H 1.08990 * 117.50419 * 214.97551 * 25 9 7 36 36 H 1.09001 * 117.49589 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4218 2.0896 -1.3974 5 1 1.4859 2.6300 0.7734 6 1 3.5820 1.4198 0.6241 7 6 2.0046 -1.1941 -0.0005 8 1 1.4725 -2.1248 0.1293 9 6 3.5013 -1.1998 -0.1759 10 6 4.0078 -0.7232 -1.5387 11 16 3.4686 -1.8841 -2.8241 12 8 4.0465 -3.1650 -2.6131 13 8 2.0772 -1.7402 -3.0741 14 8 4.1330 -1.3775 -4.0963 15 6 5.4758 -1.5665 -4.1304 16 6 6.3342 -0.6488 -3.5373 17 7 7.6378 -0.8283 -3.5675 18 6 8.1893 -1.8731 -4.1541 19 6 7.4155 -2.8351 -4.7698 20 6 6.0224 -2.6957 -4.7607 21 6 5.1534 -3.7044 -5.4004 22 8 3.9551 -3.5175 -5.4698 23 8 5.6897 -4.8316 -5.9070 24 6 4.2901 -2.3093 0.5223 25 6 4.3575 -0.8738 1.0494 26 1 -0.4850 0.8400 0.0004 27 1 3.6038 0.2667 -1.7506 28 1 5.0967 -0.6759 -1.5254 29 1 5.9269 0.2219 -3.0449 30 1 9.2643 -1.9768 -4.1532 31 1 7.8776 -3.6863 -5.2475 32 1 5.0812 -5.4618 -6.3162 33 1 3.7265 -3.0349 1.1088 34 1 5.1701 -2.6994 0.0110 35 1 5.2817 -0.3202 0.8848 36 1 3.8381 -0.6548 1.9824 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608179434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:45 Heat of formation + Delta-G solvation = -144.405907 kcal Electronic energy + Delta-G solvation = -27023.159103 eV Core-core repulsion = 22987.007478 eV Total energy + Delta-G solvation = -4036.151624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.88966 -41.00587 -40.21541 -38.90734 -38.30697 -37.29843 -37.16360 -34.36009 -34.07599 -32.10576 -30.40458 -27.73022 -26.95460 -25.34629 -23.39013 -23.29177 -22.20312 -21.08369 -19.74704 -19.67774 -19.06780 -18.94830 -18.54441 -18.08845 -17.22965 -17.02683 -16.88489 -16.38239 -16.27304 -15.63115 -15.40594 -15.12034 -15.00688 -14.77931 -14.64359 -14.38003 -14.10220 -13.83702 -13.32826 -13.30709 -13.23821 -13.12638 -12.81519 -12.71377 -12.52016 -12.23067 -12.19749 -11.93959 -11.64558 -11.33761 -10.99895 -10.97354 -10.75580 -10.49690 -10.27003 -8.34977 -6.47301 -1.32288 -0.73243 -0.32386 1.00885 1.23747 1.27076 1.35252 1.49551 1.62711 2.32771 2.33847 2.56971 2.83280 2.89376 3.03402 3.17292 3.21419 3.40423 3.49439 3.61504 3.72290 3.92406 4.16996 4.25122 4.34112 4.46932 4.50756 4.60129 4.70724 4.87679 4.90839 5.18615 5.25743 5.32916 5.47121 5.56265 6.17617 6.44082 6.62227 6.68832 7.23989 8.81412 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.005469 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.840668 B = 5118.870770 C = 5701.945471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.025 3.975 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.192 1.192 7 C -0.519 4.519 8 H 0.029 0.971 9 C -0.038 4.038 10 C -0.595 4.595 11 S 2.597 3.403 12 O -0.971 6.971 13 O -0.963 6.963 14 O -0.664 6.664 15 C 0.037 3.963 16 C 0.085 3.915 17 N -0.437 5.437 18 C 0.122 3.878 19 C -0.075 4.075 20 C -0.088 4.088 21 C 0.526 3.474 22 O -0.538 6.538 23 O -0.484 6.484 24 C -0.173 4.173 25 C -0.148 4.148 26 H 0.269 0.731 27 H 0.130 0.870 28 H 0.166 0.834 29 H 0.198 0.802 30 H 0.234 0.766 31 H 0.206 0.794 32 H 0.439 0.561 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.391 -3.122 -10.172 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.175 4.175 3 Si 0.728 3.272 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.113 1.113 7 C -0.556 4.556 8 H 0.047 0.953 9 C -0.041 4.041 10 C -0.725 4.725 11 S 2.697 3.303 12 O -0.969 6.969 13 O -0.962 6.962 14 O -0.621 6.621 15 C -0.008 4.008 16 C -0.073 4.073 17 N -0.147 5.147 18 C -0.035 4.035 19 C -0.095 4.095 20 C -0.099 4.099 21 C 0.370 3.630 22 O -0.428 6.428 23 O -0.299 6.299 24 C -0.210 4.210 25 C -0.186 4.186 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.183 0.817 29 H 0.215 0.785 30 H 0.250 0.750 31 H 0.223 0.777 32 H 0.302 0.698 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 25.166 -2.592 -10.152 27.260 hybrid contribution -2.396 -0.028 -0.374 2.425 sum 22.770 -2.620 -10.526 25.222 Atomic orbital electron populations 1.70074 1.08897 1.28539 1.49821 1.25989 0.95296 1.03684 0.92526 0.86349 0.82952 0.78016 0.79910 1.18781 1.21178 1.11329 1.20466 0.89570 0.93471 1.52085 0.95305 1.18664 0.92351 1.04771 0.88273 1.30512 1.12394 1.15851 1.13787 1.05349 0.74290 0.76246 0.74368 1.93466 1.78181 1.40124 1.85120 1.93565 1.32729 1.86954 1.82906 1.85824 1.27153 1.86210 1.62882 1.19910 0.78501 0.97788 1.04599 1.23672 0.89062 0.97929 0.96670 1.67839 1.09704 1.22331 1.14810 1.24039 1.03825 0.86694 0.88985 1.23120 0.88717 1.01766 0.95873 1.19961 0.96383 0.92597 1.00943 1.20670 0.85667 0.81709 0.75001 1.90984 1.18272 1.78214 1.55355 1.84403 1.45898 1.29406 1.70144 1.23108 1.01679 0.92101 1.04079 1.23197 1.00899 0.97279 0.97262 0.92225 0.85222 0.81657 0.78523 0.74962 0.77699 0.69750 0.89932 0.87054 0.86332 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.02 1.48 5.46 84.66 0.46 1.95 16 3 Si 0.91 41.30 25.11 68.60 1.72 43.03 16 4 H -0.26 -11.36 7.02 99.48 0.70 -10.66 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.19 -7.15 5.63 99.48 0.56 -6.59 16 7 C -0.52 -30.42 8.69 25.60 0.22 -30.20 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 9 C -0.04 -1.70 0.79 -52.93 -0.04 -1.75 16 10 C -0.60 -22.99 4.80 71.98 0.35 -22.64 16 11 S 2.60 119.16 4.54 -56.49 -0.26 118.90 16 12 O -0.97 -43.95 15.61 -117.38 -1.83 -45.79 16 13 O -0.96 -56.59 17.70 -118.57 -2.10 -58.69 16 14 O -0.66 -26.09 8.48 -55.89 -0.47 -26.56 16 15 C 0.04 1.09 4.81 22.97 0.11 1.20 16 16 C 0.09 1.86 9.31 84.90 0.79 2.65 16 17 N -0.44 -7.15 10.32 -195.58 -2.02 -9.17 16 18 C 0.12 1.16 11.16 84.61 0.94 2.10 16 19 C -0.08 -0.93 9.70 22.63 0.22 -0.71 16 20 C -0.09 -2.20 5.47 -19.82 -0.11 -2.31 16 21 C 0.53 15.05 7.72 70.33 0.54 15.60 16 22 O -0.54 -21.31 15.26 27.90 0.43 -20.88 16 23 O -0.48 -8.15 12.80 -56.22 -0.72 -8.87 16 24 C -0.17 -6.55 9.96 30.62 0.30 -6.24 16 25 C -0.15 -5.27 7.86 30.62 0.24 -5.03 16 26 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 27 H 0.13 4.96 5.27 -2.39 -0.01 4.95 16 28 H 0.17 4.42 5.70 -2.39 -0.01 4.40 16 29 H 0.20 3.47 6.87 -2.91 -0.02 3.45 16 30 H 0.23 -0.32 8.06 -2.91 -0.02 -0.34 16 31 H 0.21 0.82 7.72 -2.91 -0.02 0.79 16 32 H 0.44 3.86 9.11 -74.06 -0.67 3.19 16 33 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.12 3.23 8.14 -2.39 -0.02 3.22 16 36 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -96.02 320.94 -0.59 -96.61 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.33 Total: 17.55 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 4.03 Total: -45.39 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.72 Total: -69.91 kcal Atomic # 8 Polarization: -156.09 SS G_CDS: -4.70 Total: -160.79 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.72 Total: 43.03 kcal Atomic # 16 Polarization: 119.16 SS G_CDS: -0.26 Total: 118.90 kcal Total: -96.02 -0.59 -96.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.794 kcal (2) G-P(sol) polarization free energy of solvation -96.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds