Wall clock time and date at job start Tue Mar 31 2020 15:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48506 * 109.47357 * 270.00403 * 3 2 1 5 5 H 1.48504 * 109.47020 * 30.00305 * 3 2 1 6 6 H 1.48495 * 109.47257 * 150.00103 * 3 2 1 7 7 C 1.37873 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99989 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00211 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99836 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99858 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.46922 * 179.97438 * 13 11 10 15 15 C 1.34799 * 116.99852 * 180.02562 * 14 13 11 16 16 O 1.21565 * 120.00067 * 359.97438 * 15 14 13 17 17 C 1.47034 * 120.00146 * 180.02562 * 15 14 13 18 18 C 1.44470 * 123.47524 * 0.17326 * 17 15 14 19 19 C 1.32738 * 113.09154 * 180.24222 * 18 17 15 20 20 S 1.75499 * 110.59705 * 359.78351 * 19 18 17 21 21 C 1.36099 * 123.47464 * 179.97438 * 17 15 14 22 22 C 1.50693 * 124.59973 * 0.03624 * 21 17 15 23 23 C 1.50697 * 109.47486 * 89.71866 * 22 21 17 24 24 O 1.20833 * 119.99747 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00262 * 179.72204 * 23 22 21 26 26 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47274 * 59.99228 * 9 7 2 28 28 H 1.09000 * 109.46441 * 299.99145 * 9 7 2 29 29 H 0.97003 * 119.99928 * 359.97438 * 10 9 7 30 30 H 1.09001 * 109.47390 * 59.99339 * 13 11 10 31 31 H 1.09001 * 109.46491 * 299.99243 * 13 11 10 32 32 H 1.08001 * 123.45534 * 0.02562 * 18 17 15 33 33 H 1.07996 * 124.70011 * 179.77502 * 19 18 17 34 34 H 1.09004 * 109.47069 * 329.72069 * 22 21 17 35 35 H 1.09000 * 109.47237 * 209.72575 * 22 21 17 36 36 H 0.96699 * 116.99771 * 180.27188 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5753 -0.0001 11 6 5.3250 -2.8215 0.0009 12 8 6.1132 -1.8996 0.0014 13 6 5.8274 -4.2423 0.0014 14 8 7.2793 -4.2423 0.0018 15 6 7.8913 -5.4433 0.0017 16 8 7.2293 -6.4629 0.0018 17 6 9.3597 -5.5203 0.0027 18 6 10.2185 -4.3586 0.0075 19 6 11.5098 -4.6658 0.0024 20 16 11.7302 -6.4069 -0.0024 21 6 10.0499 -6.6933 0.0032 22 6 9.4148 -8.0598 0.0020 23 6 9.1985 -8.5121 -1.4191 24 8 9.5268 -7.7980 -2.3369 25 8 8.6466 -9.7106 -1.6655 26 1 -0.4850 0.8400 -0.0004 27 1 3.8747 -0.6807 0.8904 28 1 3.8752 -0.6797 -0.8896 29 1 3.3696 -3.3126 -0.0001 30 1 5.4646 -4.7563 -0.8888 31 1 5.4634 -4.7560 0.8912 32 1 9.8479 -3.3442 0.0111 33 1 12.3134 -3.9444 0.0011 34 1 8.4562 -8.0154 0.5190 35 1 10.0703 -8.7656 0.5122 36 1 8.5316 -9.9586 -2.5930 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:59 Heat of formation + Delta-G solvation = -176.948067 kcal Electronic energy + Delta-G solvation = -24301.141800 eV Core-core repulsion = 20263.579042 eV Total energy + Delta-G solvation = -4037.562758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.94121 -40.35503 -38.97672 -37.69325 -36.40235 -36.36400 -34.39114 -32.82346 -32.44542 -29.82090 -28.47972 -27.15277 -25.03343 -22.41475 -21.99490 -21.86942 -20.15950 -20.02932 -18.49836 -17.88771 -17.64570 -17.14134 -16.88324 -16.66200 -16.49563 -16.09511 -15.76777 -15.19902 -14.80939 -14.47480 -13.98627 -13.77500 -13.70791 -13.48494 -13.16438 -13.11338 -12.78583 -12.59256 -12.38663 -12.19967 -12.08685 -11.82705 -11.46590 -11.08177 -10.97616 -10.86100 -10.76154 -10.60334 -10.01218 -9.55595 -9.36842 -9.34039 -8.86929 -8.82920 -8.28608 -6.25183 -4.28338 0.18452 1.00387 1.42145 1.53992 1.88468 2.41241 2.61500 2.92614 3.01785 3.24710 3.31559 3.39244 3.85617 3.94674 4.30037 4.44695 4.48235 4.82991 4.95507 5.01011 5.09311 5.13052 5.15080 5.17909 5.20866 5.50357 5.68488 5.89169 6.14364 6.20790 6.71695 6.99596 7.07531 7.30357 7.52685 7.54121 8.03330 8.39757 8.66393 8.78293 9.33835 10.86589 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.002397 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.540786 B =11677.051878 C =12674.311225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.536 6.536 13 C 0.050 3.950 14 O -0.320 6.320 15 C 0.532 3.468 16 O -0.512 6.512 17 C -0.131 4.131 18 C -0.085 4.085 19 C -0.232 4.232 20 S 0.213 5.787 21 C -0.142 4.142 22 C -0.057 4.057 23 C 0.489 3.511 24 O -0.507 6.507 25 O -0.513 6.513 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.399 0.601 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.149 0.851 35 H 0.119 0.881 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.041 -18.818 0.794 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.286 3.714 12 O -0.413 6.413 13 C -0.027 4.027 14 O -0.235 6.235 15 C 0.375 3.625 16 O -0.403 6.403 17 C -0.148 4.148 18 C -0.112 4.112 19 C -0.367 4.367 20 S 0.480 5.520 21 C -0.262 4.262 22 C -0.096 4.096 23 C 0.330 3.670 24 O -0.394 6.394 25 O -0.325 6.325 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.233 0.767 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.182 0.818 33 H 0.193 0.807 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 25.648 -18.866 0.949 31.854 hybrid contribution -1.608 1.283 -0.701 2.173 sum 24.040 -17.583 0.248 29.785 Atomic orbital electron populations 1.69878 1.06215 1.27516 1.49164 1.24789 0.94806 0.99194 0.93788 0.86815 0.80568 0.83188 0.79113 1.19785 1.20839 1.18459 1.21064 0.88325 0.95343 1.53651 0.90122 1.19559 0.95367 0.77933 0.97080 1.46060 1.04827 1.11559 1.72503 1.19898 0.83727 0.89371 0.78441 1.90700 1.55323 1.45643 1.49683 1.22857 0.77459 0.97457 1.04973 1.86623 1.21953 1.31447 1.83430 1.20402 0.88040 0.81541 0.72470 1.90778 1.66587 1.35847 1.47079 1.19248 0.90676 0.92846 1.12048 1.21377 0.91453 0.99612 0.98792 1.25507 1.00860 0.98589 1.11711 1.82967 0.99241 1.01365 1.68391 1.23815 0.99953 0.97258 1.05171 1.19950 1.05781 0.91271 0.92592 1.22938 0.73325 0.78661 0.92052 1.90765 1.47475 1.54409 1.46738 1.84488 1.75265 1.36224 1.36570 0.92178 0.95405 0.95863 0.76689 0.88209 0.88092 0.81805 0.80727 0.83376 0.86254 0.72783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.55 -14.75 9.83 -34.44 -0.34 -15.08 16 8 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 9 C 0.22 5.37 4.50 -5.19 -0.02 5.34 16 10 N -0.70 -13.80 5.55 -61.47 -0.34 -14.14 16 11 C 0.50 9.54 7.91 -10.99 -0.09 9.46 16 12 O -0.54 -12.27 16.50 -14.11 -0.23 -12.50 16 13 C 0.05 0.74 5.96 36.01 0.21 0.95 16 14 O -0.32 -5.00 9.48 -47.45 -0.45 -5.45 16 15 C 0.53 7.50 7.92 34.30 0.27 7.77 16 16 O -0.51 -7.40 13.84 -19.32 -0.27 -7.66 16 17 C -0.13 -1.58 5.98 -104.65 -0.63 -2.21 16 18 C -0.08 -0.89 10.13 -39.01 -0.40 -1.29 16 19 C -0.23 -1.86 11.12 28.85 0.32 -1.54 16 20 S 0.21 1.58 22.97 -107.50 -2.47 -0.89 16 21 C -0.14 -1.41 4.84 -35.08 -0.17 -1.58 16 22 C -0.06 -0.48 5.53 -29.04 -0.16 -0.64 16 23 C 0.49 4.93 8.29 36.00 0.30 5.23 16 24 O -0.51 -6.75 16.79 -18.76 -0.31 -7.07 16 25 O -0.51 -3.85 13.42 -39.26 -0.53 -4.38 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 28 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 29 H 0.40 6.78 8.32 -40.82 -0.34 6.44 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.15 1.36 5.96 -51.93 -0.31 1.06 16 35 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.41 1.47 9.10 45.56 0.41 1.88 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -36.31 343.04 -6.81 -43.13 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.69 Total: 4.22 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.79 Total: 8.50 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.43 Total: -39.57 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.79 Total: -37.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.31 -6.81 -43.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.822 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds