Wall clock time and date at job start Tue Mar 31 2020 15:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48506 * 109.47357 * 270.00403 * 3 2 1 5 5 H 1.48504 * 109.47020 * 30.00305 * 3 2 1 6 6 H 1.48495 * 109.47257 * 150.00103 * 3 2 1 7 7 C 1.37873 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99989 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00211 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99836 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99858 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.46922 * 179.97438 * 13 11 10 15 15 C 1.34799 * 116.99852 * 180.02562 * 14 13 11 16 16 O 1.21565 * 120.00067 * 359.97438 * 15 14 13 17 17 C 1.47034 * 120.00146 * 180.02562 * 15 14 13 18 18 C 1.44470 * 123.47524 * 0.17326 * 17 15 14 19 19 C 1.32738 * 113.09154 * 180.24222 * 18 17 15 20 20 S 1.75499 * 110.59705 * 359.78351 * 19 18 17 21 21 C 1.36099 * 123.47464 * 179.97438 * 17 15 14 22 22 C 1.50693 * 124.59973 * 0.03624 * 21 17 15 23 23 C 1.50697 * 109.47486 * 89.71866 * 22 21 17 24 24 O 1.20833 * 119.99747 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00262 * 179.72204 * 23 22 21 26 26 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47274 * 59.99228 * 9 7 2 28 28 H 1.09000 * 109.46441 * 299.99145 * 9 7 2 29 29 H 0.97003 * 119.99928 * 359.97438 * 10 9 7 30 30 H 1.09001 * 109.47390 * 59.99339 * 13 11 10 31 31 H 1.09001 * 109.46491 * 299.99243 * 13 11 10 32 32 H 1.08001 * 123.45534 * 0.02562 * 18 17 15 33 33 H 1.07996 * 124.70011 * 179.77502 * 19 18 17 34 34 H 1.09004 * 109.47069 * 329.72069 * 22 21 17 35 35 H 1.09000 * 109.47237 * 209.72575 * 22 21 17 36 36 H 0.96699 * 116.99771 * 180.27188 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5753 -0.0001 11 6 5.3250 -2.8215 0.0009 12 8 6.1132 -1.8996 0.0014 13 6 5.8274 -4.2423 0.0014 14 8 7.2793 -4.2423 0.0018 15 6 7.8913 -5.4433 0.0017 16 8 7.2293 -6.4629 0.0018 17 6 9.3597 -5.5203 0.0027 18 6 10.2185 -4.3586 0.0075 19 6 11.5098 -4.6658 0.0024 20 16 11.7302 -6.4069 -0.0024 21 6 10.0499 -6.6933 0.0032 22 6 9.4148 -8.0598 0.0020 23 6 9.1985 -8.5121 -1.4191 24 8 9.5268 -7.7980 -2.3369 25 8 8.6466 -9.7106 -1.6655 26 1 -0.4850 0.8400 -0.0004 27 1 3.8747 -0.6807 0.8904 28 1 3.8752 -0.6797 -0.8896 29 1 3.3696 -3.3126 -0.0001 30 1 5.4646 -4.7563 -0.8888 31 1 5.4634 -4.7560 0.8912 32 1 9.8479 -3.3442 0.0111 33 1 12.3134 -3.9444 0.0011 34 1 8.4562 -8.0154 0.5190 35 1 10.0703 -8.7656 0.5122 36 1 8.5316 -9.9586 -2.5930 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:57 Heat of formation + Delta-G solvation = -203.357693 kcal Electronic energy + Delta-G solvation = -24302.287007 eV Core-core repulsion = 20263.579042 eV Total energy + Delta-G solvation = -4038.707966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91118 -41.22950 -40.46657 -38.55591 -37.43923 -37.11912 -36.22056 -34.47627 -33.51221 -31.29225 -29.60471 -28.54270 -25.94557 -24.10917 -22.95486 -22.66095 -21.76017 -20.97648 -19.35847 -19.22396 -18.72995 -18.18431 -17.98133 -17.85899 -17.44881 -17.09417 -16.89314 -16.78222 -16.26101 -16.02476 -15.19755 -14.80195 -14.73567 -14.38801 -14.36988 -14.31907 -14.09804 -13.80423 -13.70967 -13.49696 -13.09782 -12.87157 -12.71913 -12.57757 -12.16259 -11.96500 -11.93968 -11.77024 -11.68454 -11.55359 -10.99660 -10.93227 -10.06317 -10.03008 -9.51396 -8.40848 -6.48528 -0.57936 0.34337 0.71673 0.74133 1.14599 1.29726 1.33383 1.37043 1.46960 1.49242 1.81721 2.22349 2.27597 2.49231 2.94514 3.25900 3.55584 3.65971 3.85833 3.99732 4.01754 4.17330 4.34815 4.43807 4.54442 4.72065 4.77661 4.99173 5.01854 5.13905 5.18004 5.22923 5.37934 5.55400 6.04555 6.47157 6.51881 6.69839 6.91862 7.09966 7.25300 8.73731 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.002397 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.540786 B =11677.051878 C =12674.311225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.696 5.696 11 C 0.505 3.495 12 O -0.576 6.576 13 C 0.059 3.941 14 O -0.339 6.339 15 C 0.529 3.471 16 O -0.522 6.522 17 C -0.166 4.166 18 C -0.110 4.110 19 C -0.226 4.226 20 S 0.281 5.719 21 C -0.152 4.152 22 C -0.060 4.060 23 C 0.492 3.508 24 O -0.546 6.546 25 O -0.507 6.507 26 H 0.273 0.727 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.413 0.587 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.203 0.797 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.405 -20.041 1.053 33.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.348 5.348 11 C 0.291 3.709 12 O -0.457 6.457 13 C -0.018 4.018 14 O -0.254 6.254 15 C 0.374 3.626 16 O -0.414 6.414 17 C -0.183 4.183 18 C -0.137 4.137 19 C -0.361 4.361 20 S 0.550 5.450 21 C -0.272 4.272 22 C -0.099 4.099 23 C 0.334 3.666 24 O -0.436 6.436 25 O -0.321 6.321 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.249 0.751 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.220 0.780 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 28.004 -20.150 1.207 34.521 hybrid contribution -2.274 1.498 -0.793 2.836 sum 25.730 -18.652 0.414 31.782 Atomic orbital electron populations 1.69979 1.07710 1.28676 1.50541 1.25595 0.95544 1.02702 0.93543 0.85862 0.79324 0.79280 0.79471 1.19028 1.19842 1.18245 1.21267 0.89769 0.94725 1.52834 0.92037 1.19180 0.93477 0.80264 0.96168 1.45849 1.05789 1.10405 1.72725 1.20523 0.82769 0.90901 0.76687 1.90677 1.56190 1.47466 1.51325 1.22760 0.77699 0.94145 1.07214 1.86613 1.22091 1.32803 1.83940 1.20799 0.88938 0.80808 0.72031 1.90755 1.66994 1.35765 1.47913 1.19333 0.89656 0.94261 1.15000 1.21331 0.92429 0.98975 1.00966 1.25899 1.00635 1.00105 1.09492 1.82737 0.96455 0.99939 1.65912 1.24189 1.01705 0.97325 1.03969 1.20096 1.06329 0.91488 0.91965 1.23218 0.72453 0.78668 0.92225 1.90751 1.49385 1.55562 1.47950 1.84459 1.74428 1.35022 1.38216 0.91797 0.96385 0.96646 0.75057 0.86172 0.85448 0.82940 0.77987 0.84137 0.82403 0.70864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 2 C 0.03 1.50 5.47 84.65 0.46 1.96 16 3 Si 0.94 43.66 27.47 68.60 1.88 45.54 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 7 C -0.55 -29.88 9.83 25.60 0.25 -29.63 16 8 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 9 C 0.23 11.23 4.50 85.63 0.38 11.62 16 10 N -0.70 -27.30 5.55 -466.77 -2.59 -29.89 16 11 C 0.51 19.06 7.91 87.66 0.69 19.75 16 12 O -0.58 -26.60 16.50 15.75 0.26 -26.34 16 13 C 0.06 1.67 5.96 71.24 0.42 2.09 16 14 O -0.34 -10.60 9.48 -50.72 -0.48 -11.08 16 15 C 0.53 14.85 7.92 70.13 0.56 15.41 16 16 O -0.52 -14.79 13.84 19.62 0.27 -14.52 16 17 C -0.17 -3.91 5.98 -19.88 -0.12 -4.03 16 18 C -0.11 -2.27 10.13 22.68 0.23 -2.04 16 19 C -0.23 -3.17 11.12 66.65 0.74 -2.43 16 20 S 0.28 3.38 22.97 -56.49 -1.30 2.09 16 21 C -0.15 -2.77 4.84 25.19 0.12 -2.65 16 22 C -0.06 -0.91 5.53 29.10 0.16 -0.75 16 23 C 0.49 9.16 8.29 71.23 0.59 9.75 16 24 O -0.55 -14.07 16.79 21.94 0.37 -13.70 16 25 O -0.51 -6.67 13.42 -51.41 -0.69 -7.36 16 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 28 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 29 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 30 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.14 2.40 5.96 -2.38 -0.01 2.39 16 35 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.43 2.32 9.10 -74.06 -0.67 1.65 16 Total: -1.00 -79.12 343.04 2.19 -76.92 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.33 Total: 14.28 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 4.50 Total: 19.05 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.29 Total: -84.86 kcal Atomic # 8 Polarization: -72.74 SS G_CDS: -0.27 Total: -73.02 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.30 Total: 2.09 kcal Total: -79.12 2.19 -76.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.434 kcal (2) G-P(sol) polarization free energy of solvation -79.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds