Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99905 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99995 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46497 * 114.57266 * 272.66277 * 15 14 13 17 17 C 1.34779 * 120.00099 * 248.66915 * 16 15 14 18 18 O 1.21575 * 119.99518 * 0.02562 * 17 16 15 19 19 C 1.47689 * 120.00107 * 180.02562 * 17 16 15 20 20 C 1.39491 * 122.10231 * 179.74204 * 19 17 16 21 21 C 1.35001 * 111.68143 * 179.78080 * 20 19 17 22 22 S 1.71760 * 105.45234 * 0.43381 * 21 20 19 23 23 N 1.30601 * 122.10494 * 0.02595 * 19 17 16 24 24 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 25 25 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 27 27 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 28 28 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 29 29 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 30 30 H 1.09000 * 114.08403 * 139.77717 * 15 14 13 31 31 H 0.97002 * 120.00113 * 68.66897 * 16 15 14 32 32 H 1.08002 * 124.15369 * 359.97438 * 20 19 17 33 33 H 1.07996 * 127.27384 * 180.16526 * 21 20 19 34 34 H 1.09001 * 113.46952 * 321.86856 * 24 13 11 35 35 H 1.08996 * 113.46849 * 92.31026 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 7 4.0361 -7.7862 2.1378 17 6 5.0301 -8.3082 2.8834 18 8 5.9790 -8.8427 2.3428 19 6 4.9668 -8.2311 4.3569 20 6 5.9680 -8.7612 5.1707 21 6 5.6999 -8.5701 6.4799 22 16 4.1935 -7.7461 6.5231 23 7 3.9672 -7.6671 4.9801 24 6 2.7297 -7.8092 -0.0165 25 1 -0.4851 0.8400 -0.0004 26 1 3.1212 -3.7293 -0.8992 27 1 3.1279 -3.7332 0.8807 28 1 4.7224 -6.6035 -1.0299 29 1 4.8324 -5.7788 0.5838 30 1 4.7516 -8.6574 0.3141 31 1 3.2792 -7.3595 2.5691 32 1 6.8508 -9.2601 4.7989 33 1 6.3029 -8.8751 7.3224 34 1 1.9144 -8.1821 0.6034 35 1 2.7319 -8.2428 -1.0165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688621091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = 20.982536 kcal Electronic energy + Delta-G solvation = -21874.235631 eV Core-core repulsion = 18320.301410 eV Total energy + Delta-G solvation = -3553.934221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08356 -40.12213 -38.48118 -37.44928 -34.01750 -32.44333 -31.90393 -30.41716 -28.13390 -26.72147 -26.10312 -25.44840 -22.91216 -21.31479 -20.54689 -19.09451 -18.72622 -18.16774 -17.70341 -16.67630 -16.51037 -15.85870 -15.39927 -15.33838 -15.03830 -14.81482 -14.34667 -14.06033 -13.90115 -13.72486 -13.49568 -13.01447 -12.87521 -12.60880 -12.13098 -11.91547 -11.64730 -11.60955 -11.24329 -11.06849 -11.02618 -10.77254 -10.38757 -10.29930 -9.83745 -9.55369 -9.38434 -9.18572 -9.07946 -8.68506 -8.26006 -6.52172 -6.22897 -3.93878 0.18323 1.04678 1.36184 1.40024 2.67846 2.71684 2.85496 3.03514 3.21590 3.23827 3.29209 3.54580 4.07232 4.18996 4.25161 4.48008 4.55533 4.88336 4.89347 4.99671 5.11162 5.12417 5.23478 5.36459 5.38051 5.42525 5.47959 5.54861 5.85932 5.87275 5.94202 6.12846 6.16894 7.13794 7.58416 7.76700 7.79627 8.34034 8.49827 9.22332 10.84552 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002804 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.379417 B = 9983.474622 C =11177.545389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.563 3.437 12 O -0.513 6.513 13 N -0.654 5.654 14 C 0.088 3.912 15 C 0.104 3.896 16 N -0.689 5.689 17 C 0.600 3.400 18 O -0.528 6.528 19 C 0.044 3.956 20 C -0.133 4.133 21 C -0.288 4.288 22 S 0.485 5.515 23 N -0.518 5.518 24 C 0.098 3.902 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.415 0.585 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.083 0.917 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.452 -20.289 11.248 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.352 3.648 12 O -0.386 6.386 13 N -0.394 5.394 14 C -0.037 4.037 15 C -0.002 4.002 16 N -0.340 5.340 17 C 0.381 3.619 18 O -0.403 6.403 19 C -0.130 4.130 20 C -0.166 4.166 21 C -0.436 4.436 22 S 0.640 5.360 23 N -0.353 5.353 24 C -0.026 4.026 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.252 0.748 32 H 0.190 0.810 33 H 0.205 0.795 34 H 0.101 0.899 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.231 -19.661 11.536 24.986 hybrid contribution 3.201 0.732 -0.719 3.361 sum 13.431 -18.929 10.817 25.607 Atomic orbital electron populations 1.70015 1.05952 1.27487 1.46817 1.24991 0.95035 0.99029 0.94500 0.86161 0.79414 0.81515 0.78374 1.20242 1.20709 1.19686 1.22853 0.94893 0.91573 1.59026 0.90948 1.85388 1.04832 0.96341 1.96723 1.23470 1.06518 0.94661 1.04850 1.19952 0.85268 0.84909 0.74633 1.90721 1.14747 1.84885 1.48258 1.49779 1.07778 1.05861 1.75986 1.23546 0.82615 0.96455 1.01090 1.22331 0.98825 0.99009 0.80048 1.45390 1.24267 1.58648 1.05730 1.17197 0.82363 0.78056 0.84246 1.90809 1.32899 1.44367 1.72252 1.21086 0.92498 1.03079 0.96362 1.21397 1.01370 1.02289 0.91509 1.27268 1.06568 1.08257 1.01549 1.80690 1.10689 1.42670 1.01941 1.72260 1.29027 1.23948 1.10065 1.23272 0.96753 0.81627 1.00941 0.92156 0.89289 0.89400 0.88377 0.89914 0.85386 0.74781 0.80982 0.79483 0.89894 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.14 -3.04 5.98 36.00 0.22 -2.82 16 11 C 0.56 10.99 8.10 -10.99 -0.09 10.90 16 12 O -0.51 -12.04 16.64 5.56 0.09 -11.95 16 13 N -0.65 -9.25 3.69 -185.07 -0.68 -9.93 16 14 C 0.09 0.91 8.26 -8.38 -0.07 0.84 16 15 C 0.10 0.99 4.61 -67.66 -0.31 0.67 16 16 N -0.69 -7.47 5.40 -54.47 -0.29 -7.76 16 17 C 0.60 6.95 7.81 -12.40 -0.10 6.85 16 18 O -0.53 -7.02 16.25 5.30 0.09 -6.93 16 19 C 0.04 0.46 6.66 -84.06 -0.56 -0.10 16 20 C -0.13 -1.09 9.98 -40.26 -0.40 -1.50 16 21 C -0.29 -1.69 11.41 29.58 0.34 -1.35 16 22 S 0.49 3.33 23.20 -107.50 -2.49 0.84 16 23 N -0.52 -5.41 10.71 24.85 0.27 -5.14 16 24 C 0.10 1.02 8.38 -8.50 -0.07 0.95 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 27 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 28 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.13 1.05 7.45 -51.93 -0.39 0.66 16 31 H 0.42 4.82 8.23 -40.82 -0.34 4.49 16 32 H 0.17 1.25 7.99 -52.49 -0.42 0.83 16 33 H 0.19 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -36.97 343.41 -8.85 -45.82 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.65 Total: 1.42 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.85 Total: 1.37 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.02 Total: -48.40 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.18 Total: -18.88 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -4.71 Total: -3.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.97 -8.85 -45.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688621091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.798 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds