Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99905 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99995 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46497 * 114.57266 * 272.66277 * 15 14 13 17 17 C 1.34779 * 120.00099 * 248.66915 * 16 15 14 18 18 O 1.21575 * 119.99518 * 0.02562 * 17 16 15 19 19 C 1.47689 * 120.00107 * 180.02562 * 17 16 15 20 20 C 1.39491 * 122.10231 * 179.74204 * 19 17 16 21 21 C 1.35001 * 111.68143 * 179.78080 * 20 19 17 22 22 S 1.71760 * 105.45234 * 0.43381 * 21 20 19 23 23 N 1.30601 * 122.10494 * 0.02595 * 19 17 16 24 24 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 25 25 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 27 27 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 28 28 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 29 29 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 30 30 H 1.09000 * 114.08403 * 139.77717 * 15 14 13 31 31 H 0.97002 * 120.00113 * 68.66897 * 16 15 14 32 32 H 1.08002 * 124.15369 * 359.97438 * 20 19 17 33 33 H 1.07996 * 127.27384 * 180.16526 * 21 20 19 34 34 H 1.09001 * 113.46952 * 321.86856 * 24 13 11 35 35 H 1.08996 * 113.46849 * 92.31026 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 7 4.0361 -7.7862 2.1378 17 6 5.0301 -8.3082 2.8834 18 8 5.9790 -8.8427 2.3428 19 6 4.9668 -8.2311 4.3569 20 6 5.9680 -8.7612 5.1707 21 6 5.6999 -8.5701 6.4799 22 16 4.1935 -7.7461 6.5231 23 7 3.9672 -7.6671 4.9801 24 6 2.7297 -7.8092 -0.0165 25 1 -0.4851 0.8400 -0.0004 26 1 3.1212 -3.7293 -0.8992 27 1 3.1279 -3.7332 0.8807 28 1 4.7224 -6.6035 -1.0299 29 1 4.8324 -5.7788 0.5838 30 1 4.7516 -8.6574 0.3141 31 1 3.2792 -7.3595 2.5691 32 1 6.8508 -9.2601 4.7989 33 1 6.3029 -8.8751 7.3224 34 1 1.9144 -8.1821 0.6034 35 1 2.7319 -8.2428 -1.0165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688621091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = -7.365790 kcal Electronic energy + Delta-G solvation = -21875.464907 eV Core-core repulsion = 18320.301410 eV Total energy + Delta-G solvation = -3555.163497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98799 -41.04688 -39.48945 -38.67067 -34.94191 -34.62145 -32.56223 -31.85834 -29.36024 -27.75290 -27.47786 -26.96498 -23.71732 -22.25661 -21.27767 -20.40547 -19.58628 -19.34684 -18.86045 -18.06072 -17.45596 -16.95864 -16.88501 -16.61980 -16.54793 -15.84302 -15.76732 -15.16196 -15.01326 -14.66630 -14.44854 -14.21960 -14.18008 -13.71957 -13.52374 -13.22617 -13.10629 -12.91450 -12.62305 -12.33127 -12.19986 -12.14645 -11.77019 -11.21016 -11.17362 -10.99935 -10.87737 -10.35097 -10.32712 -9.87747 -9.79338 -8.72068 -8.37875 -6.17158 -0.45203 0.51524 0.70040 0.79380 1.16957 1.39965 1.40497 1.50295 1.53853 1.88998 1.95563 2.05308 2.24063 2.96138 3.12315 3.27186 3.54276 3.61308 3.84311 3.86230 4.11958 4.26506 4.39510 4.40967 4.44414 4.54392 4.55715 4.59234 4.68752 4.81142 4.86826 5.18096 5.37930 5.38487 6.16288 6.25042 6.52194 6.90686 7.02973 7.04386 8.71499 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002804 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.379417 B = 9983.474622 C =11177.545389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.080 0.920 9 S -0.146 6.146 10 C -0.119 4.119 11 C 0.562 3.438 12 O -0.565 6.565 13 N -0.653 5.653 14 C 0.087 3.913 15 C 0.116 3.884 16 N -0.692 5.692 17 C 0.599 3.401 18 O -0.550 6.550 19 C 0.022 3.978 20 C -0.151 4.151 21 C -0.265 4.265 22 S 0.522 5.478 23 N -0.559 5.559 24 C 0.099 3.901 25 H 0.272 0.728 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.410 0.590 32 H 0.179 0.821 33 H 0.224 0.776 34 H 0.075 0.925 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.216 -20.896 11.951 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.098 0.902 9 S 0.081 5.919 10 C -0.270 4.270 11 C 0.351 3.649 12 O -0.444 6.444 13 N -0.390 5.390 14 C -0.036 4.036 15 C 0.010 3.990 16 N -0.342 5.342 17 C 0.381 3.619 18 O -0.427 6.427 19 C -0.151 4.151 20 C -0.183 4.183 21 C -0.413 4.413 22 S 0.677 5.323 23 N -0.396 5.396 24 C -0.024 4.024 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.169 0.831 31 H 0.246 0.754 32 H 0.196 0.804 33 H 0.241 0.759 34 H 0.093 0.907 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.053 -20.321 12.233 27.073 hybrid contribution 2.406 0.763 -0.830 2.657 sum 15.458 -19.558 11.403 27.414 Atomic orbital electron populations 1.70176 1.07962 1.28727 1.47785 1.26139 0.95998 1.03316 0.93590 0.84939 0.78152 0.75898 0.78892 1.19167 1.20064 1.18311 1.23173 0.95244 0.91960 1.59221 0.90152 1.85540 1.10201 0.99123 1.97029 1.23256 1.03503 0.94204 1.06052 1.19558 0.85036 0.85381 0.74942 1.90694 1.16873 1.85566 1.51232 1.49709 1.09305 1.06542 1.73398 1.23921 0.79977 0.96596 1.03131 1.22360 0.98290 0.99072 0.79294 1.45495 1.23973 1.58369 1.06359 1.17423 0.81976 0.77488 0.84971 1.90781 1.33599 1.45428 1.72884 1.21147 0.93472 1.04425 0.96020 1.21521 1.01421 1.03121 0.92247 1.27668 1.05885 1.06086 1.01683 1.80497 1.10702 1.41502 0.99578 1.72072 1.30036 1.25196 1.12330 1.23608 0.97094 0.78845 1.02811 0.91870 0.87674 0.88293 0.84932 0.90309 0.83081 0.75380 0.80402 0.75933 0.90694 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.94 9.50 67.95 0.65 -31.29 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 10 C -0.12 -5.03 5.98 71.24 0.43 -4.60 16 11 C 0.56 22.10 8.10 87.66 0.71 22.81 16 12 O -0.57 -27.47 16.64 -3.02 -0.05 -27.52 16 13 N -0.65 -17.63 3.69 -857.81 -3.16 -20.80 16 14 C 0.09 1.58 8.26 83.26 0.69 2.27 16 15 C 0.12 1.94 4.61 45.56 0.21 2.15 16 16 N -0.69 -14.49 5.40 -444.50 -2.40 -16.89 16 17 C 0.60 13.53 7.81 86.74 0.68 14.21 16 18 O -0.55 -14.09 16.25 -3.95 -0.06 -14.15 16 19 C 0.02 0.46 6.66 42.13 0.28 0.74 16 20 C -0.15 -2.27 9.98 21.83 0.22 -2.05 16 21 C -0.26 -2.42 11.41 67.07 0.77 -1.65 16 22 S 0.52 6.38 23.20 -56.49 -1.31 5.06 16 23 N -0.56 -11.47 10.71 -75.30 -0.81 -12.28 16 24 C 0.10 1.88 8.38 83.18 0.70 2.58 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 26 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.15 2.00 7.45 -2.39 -0.02 1.98 16 31 H 0.41 9.57 8.23 -92.71 -0.76 8.80 16 32 H 0.18 2.36 7.99 -2.91 -0.02 2.34 16 33 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.13 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -83.90 343.41 -0.48 -84.37 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.38 Total: 15.33 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.78 Total: 6.45 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -6.08 Total: -106.08 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.11 Total: -41.67 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.47 Total: -4.44 kcal Total: -83.90 -0.48 -84.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688621091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.006 kcal (2) G-P(sol) polarization free energy of solvation -83.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds