Wall clock time and date at job start Tue Mar 31 2020 14:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46867 * 2 1 4 4 N 1.46508 * 109.46827 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00188 * 273.97385 * 4 3 2 6 6 H 1.08001 * 119.99987 * 320.26323 * 5 4 3 7 7 C 1.38815 * 119.99877 * 140.26987 * 5 4 3 8 8 N 1.31611 * 119.99933 * 344.42194 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 164.42935 * 7 5 4 10 10 H 1.48504 * 109.47647 * 59.99777 * 9 7 5 11 11 H 1.48503 * 109.47057 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47447 * 299.99547 * 9 7 5 13 13 C 1.46501 * 119.99615 * 93.97393 * 4 3 2 14 14 C 1.50704 * 109.47147 * 89.99827 * 13 4 3 15 15 C 1.38162 * 120.01950 * 259.72407 * 14 13 4 16 16 C 1.38237 * 120.06582 * 179.71759 * 15 14 13 17 17 C 1.38375 * 120.09845 * 0.56116 * 16 15 14 18 18 Br 1.89099 * 119.98231 * 179.74492 * 17 16 15 19 19 C 1.38223 * 120.03654 * 359.71527 * 17 16 15 20 20 C 1.38720 * 120.01572 * 79.99747 * 14 13 4 21 21 O 1.35896 * 120.05196 * 0.02587 * 20 14 13 22 22 C 1.42904 * 117.00332 * 179.97438 * 21 20 14 23 23 H 1.08999 * 109.47176 * 299.99440 * 1 2 3 24 24 H 1.08991 * 109.47098 * 60.00234 * 1 2 3 25 25 H 1.09004 * 109.46567 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46935 * 239.99819 * 2 1 3 27 27 H 1.09003 * 109.47183 * 120.00416 * 2 1 3 28 28 H 1.09001 * 109.47491 * 60.00159 * 3 2 1 29 29 H 1.08999 * 109.47671 * 299.99703 * 3 2 1 30 30 H 0.97000 * 119.99518 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46959 * 209.99695 * 13 4 3 32 32 H 1.08994 * 109.47456 * 330.00127 * 13 4 3 33 33 H 1.08000 * 119.97065 * 359.97438 * 15 14 13 34 34 H 1.08000 * 119.94840 * 180.27410 * 16 15 14 35 35 H 1.07997 * 120.03024 * 180.02562 * 19 17 16 36 36 H 1.09001 * 109.47566 * 179.97438 * 22 21 20 37 37 H 1.08992 * 109.47073 * 300.00160 * 22 21 20 38 38 H 1.08999 * 109.46723 * 59.99937 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3604 1.1839 6 1 3.8360 1.8997 2.0504 7 6 5.3369 0.5843 1.2697 8 7 5.6021 -0.3038 0.3352 9 14 6.5048 0.8002 2.7115 10 1 5.7844 0.5167 3.9789 11 1 7.6452 -0.1404 2.5700 12 1 7.0129 2.1954 2.7325 13 6 4.2380 1.5302 -1.2648 14 6 4.4893 2.9777 -1.6005 15 6 3.6860 3.6234 -2.5207 16 6 3.9119 4.9528 -2.8250 17 6 4.9501 5.6369 -2.2176 18 35 5.2608 7.4534 -2.6417 19 6 5.7599 4.9935 -1.3007 20 6 5.5308 3.6610 -0.9900 21 8 6.3257 3.0259 -0.0891 22 6 7.3791 3.7913 0.4997 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 6.4039 -0.8463 0.3954 31 1 5.1904 1.0086 -1.1699 32 1 3.6493 1.0702 -2.0584 33 1 2.8781 3.0902 -2.9997 34 1 3.2801 5.4569 -3.5413 35 1 6.5699 5.5276 -0.8264 36 1 7.9354 3.1666 1.1985 37 1 8.0495 4.1484 -0.2820 38 1 6.9556 4.6430 1.0320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182127361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:35 Heat of formation + Delta-G solvation = 6.136039 kcal Electronic energy + Delta-G solvation = -20842.490501 eV Core-core repulsion = 17732.228568 eV Total energy + Delta-G solvation = -3110.261933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.64698 -36.91232 -35.98591 -32.98401 -32.13796 -30.55907 -29.74188 -29.20472 -26.88172 -25.52413 -25.18375 -22.16534 -21.76627 -20.78915 -19.75654 -17.37727 -16.58782 -15.82251 -15.22320 -15.06234 -14.70098 -14.22254 -14.02446 -13.70761 -13.28521 -13.20173 -12.90656 -12.52084 -12.47125 -11.72800 -11.52780 -11.43765 -11.16143 -11.07199 -10.87549 -10.65677 -10.56429 -10.32861 -10.20695 -10.09802 -10.03099 -9.89366 -9.84796 -9.61978 -8.41146 -8.33355 -7.52556 -6.49694 -5.71135 -3.30735 1.58905 1.87642 1.89145 3.34844 3.42155 3.43083 3.97327 4.14310 4.55233 5.18685 5.35422 5.43232 5.47018 5.56484 5.61497 5.66011 5.79627 5.87465 5.91964 5.96121 6.00848 6.18916 6.26447 6.33306 6.47084 6.55273 6.56913 6.64678 6.73089 6.89496 7.04370 7.11981 7.27161 7.32721 7.74296 7.88409 8.08277 8.61228 9.24932 9.87091 10.44325 11.29993 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.004936 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.201077 B = 5671.076751 C = 7205.943784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.150 3.850 4 N -0.572 5.572 5 C -0.245 4.245 6 H 0.052 0.948 7 C 0.035 3.965 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.178 3.822 14 C -0.089 4.089 15 C -0.089 4.089 16 C -0.135 4.135 17 C -0.068 4.068 18 Br -0.077 7.077 19 C -0.195 4.195 20 C 0.156 3.844 21 O -0.261 6.261 22 C 0.022 3.978 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.254 0.746 31 H 0.115 0.885 32 H 0.033 0.967 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 11.079 -6.042 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.024 3.976 4 N -0.291 5.291 5 C -0.375 4.375 6 H 0.070 0.930 7 C -0.166 4.166 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.052 3.948 14 C -0.093 4.093 15 C -0.109 4.109 16 C -0.156 4.156 17 C -0.148 4.148 18 Br 0.008 6.992 19 C -0.216 4.216 20 C 0.108 3.892 21 O -0.171 6.171 22 C -0.074 4.074 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.051 0.949 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.622 11.391 -6.104 12.938 hybrid contribution 0.763 0.112 0.916 1.197 sum 0.141 11.503 -5.188 12.619 Atomic orbital electron populations 1.21763 0.97951 1.00232 1.00591 1.22047 0.92773 1.00750 1.02172 1.20926 0.85270 0.93411 0.97992 1.43698 0.99129 1.83674 1.02563 1.18815 1.07348 1.22110 0.89213 0.93008 1.25014 0.99991 0.94657 0.96888 1.69819 1.26509 1.21922 1.34659 0.86654 0.80999 0.77548 0.82687 1.21384 1.21877 1.20364 1.20021 1.01091 0.86838 0.86871 1.20868 0.92171 1.01870 0.94401 1.20861 0.98947 0.93355 0.97702 1.20817 0.97940 0.95008 1.01789 1.21181 1.00890 0.89975 1.02737 1.96578 1.96330 1.12488 1.93774 1.21045 1.03034 0.94841 1.02698 1.18827 0.91136 0.89440 0.89828 1.86567 1.40707 1.36866 1.53005 1.23070 0.89617 0.97136 0.97539 0.93520 0.93740 0.93943 0.92989 0.91863 0.94485 0.94905 0.93628 0.86777 0.94898 0.85516 0.86079 0.85565 0.88771 0.93701 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.67 6.24 -26.73 -0.17 -2.84 16 3 C 0.15 3.10 5.67 -4.04 -0.02 3.07 16 4 N -0.57 -13.58 2.40 -174.61 -0.42 -14.00 16 5 C -0.25 -6.39 8.60 -15.06 -0.13 -6.52 16 6 H 0.05 1.40 7.88 -52.49 -0.41 0.99 16 7 C 0.03 0.92 4.01 -17.43 -0.07 0.85 16 8 N -0.89 -24.28 11.26 55.49 0.62 -23.65 16 9 Si 0.89 20.85 29.10 -169.99 -4.95 15.90 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.10 5.74 56.52 0.32 -5.78 16 13 C 0.18 4.02 5.07 -5.19 -0.03 3.99 16 14 C -0.09 -1.79 5.48 -104.47 -0.57 -2.36 16 15 C -0.09 -1.51 9.66 -39.61 -0.38 -1.90 16 16 C -0.14 -2.13 9.78 -39.53 -0.39 -2.52 16 17 C -0.07 -1.11 6.22 -39.54 -0.25 -1.35 16 18 Br -0.08 -1.05 33.70 -68.01 -2.29 -3.34 16 19 C -0.20 -3.40 8.78 -39.41 -0.35 -3.74 16 20 C 0.16 3.12 6.66 -39.22 -0.26 2.86 16 21 O -0.26 -5.52 7.52 -19.41 -0.15 -5.66 16 22 C 0.02 0.37 9.66 101.05 0.98 1.35 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 30 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.11 2.95 5.15 -51.93 -0.27 2.69 16 32 H 0.03 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.13 1.91 8.03 -52.49 -0.42 1.48 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.98 6.30 -52.49 -0.33 1.65 16 36 H 0.09 1.58 6.62 -51.93 -0.34 1.24 16 37 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 38 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -27.10 330.11 -9.04 -36.15 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.57 Total: 0.65 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.27 Total: -11.01 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.21 Total: -37.66 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.15 Total: -5.66 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.95 Total: 15.90 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -2.29 Total: -3.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.10 -9.04 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182127361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.281 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds