Wall clock time and date at job start Tue Mar 31 2020 15:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99850 * 2 1 4 4 H 1.48495 * 109.47103 * 245.00122 * 3 2 1 5 5 H 1.48497 * 109.46972 * 5.00224 * 3 2 1 6 6 H 1.48503 * 109.46811 * 124.99988 * 3 2 1 7 7 C 1.39949 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99890 * 167.02364 * 7 2 1 9 9 C 1.41390 * 119.99988 * 347.02369 * 7 2 1 10 10 C 1.40734 * 120.24703 * 330.74569 * 9 7 2 11 11 C 1.37593 * 119.75039 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24570 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.49945 * 0.27255 * 12 11 10 14 14 C 1.37640 * 120.24891 * 359.44822 * 13 12 11 15 15 S 1.76198 * 120.12910 * 180.24927 * 14 13 12 16 16 O 1.42107 * 106.40041 * 357.85050 * 15 14 13 17 17 O 1.42097 * 106.40453 * 130.77269 * 15 14 13 18 18 N 1.65602 * 107.22152 * 244.31354 * 15 14 13 19 19 C 1.46505 * 119.99865 * 63.64619 * 18 15 14 20 20 H 1.09005 * 109.39082 * 333.84263 * 19 18 15 21 21 C 1.52581 * 109.38599 * 214.04608 * 19 18 15 22 22 C 1.52629 * 110.69919 * 169.07345 * 21 19 18 23 23 C 1.53104 * 109.87042 * 70.82248 * 22 21 19 24 24 S 1.81754 * 108.83795 * 296.93481 * 23 22 21 25 25 C 1.53090 * 109.39120 * 93.64912 * 19 18 15 26 26 H 0.96998 * 119.99961 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.12144 * 0.04206 * 10 9 7 28 28 H 1.08000 * 119.87703 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.74914 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.87209 * 179.71936 * 13 12 11 31 31 H 0.96993 * 119.99975 * 243.64366 * 18 15 14 32 32 H 1.08996 * 109.22791 * 289.49310 * 21 19 18 33 33 H 1.08999 * 109.22653 * 48.85899 * 21 19 18 34 34 H 1.08996 * 109.46359 * 310.67840 * 22 21 19 35 35 H 1.09005 * 109.31814 * 190.86847 * 22 21 19 36 36 H 1.09000 * 109.57317 * 177.12756 * 23 22 21 37 37 H 1.08995 * 109.68115 * 56.80634 * 23 22 21 38 38 H 1.09005 * 109.57931 * 302.97855 * 25 19 18 39 39 H 1.09003 * 109.57722 * 63.23693 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0021 1.7507 -1.2689 5 1 1.2818 2.7438 0.1221 6 1 3.1852 1.6449 1.1469 7 6 2.0080 -1.2120 -0.0005 8 1 3.0673 -1.2238 -0.2106 9 6 1.3282 -2.4210 0.2739 10 6 0.1960 -2.4236 1.1098 11 6 -0.4575 -3.6061 1.3704 12 6 -0.0042 -4.7922 0.8133 13 6 1.1136 -4.8023 -0.0065 14 6 1.7795 -3.6305 -0.2855 15 16 3.1960 -3.6461 -1.3332 16 8 3.4222 -5.0051 -1.6819 17 8 2.9949 -2.6199 -2.2953 18 7 4.4912 -3.1776 -0.4137 19 6 4.9209 -4.0007 0.7196 20 1 4.0721 -4.5734 1.0933 21 6 5.4506 -3.0975 1.8294 22 6 5.6539 -3.8892 3.1184 23 6 6.8468 -4.8366 2.9645 24 16 6.4761 -6.0389 1.6529 25 6 6.0206 -4.9621 0.2614 26 1 -0.4850 0.8400 0.0004 27 1 -0.1587 -1.5009 1.5448 28 1 -1.3269 -3.6104 2.0112 29 1 -0.5234 -5.7156 1.0229 30 1 1.4605 -5.7326 -0.4314 31 1 4.9652 -2.3584 -0.6254 32 1 6.4016 -2.6657 1.5176 33 1 4.7354 -2.2954 2.0115 34 1 4.7566 -4.4693 3.3337 35 1 5.8442 -3.1983 3.9397 36 1 7.0193 -5.3621 3.9037 37 1 7.7362 -4.2663 2.6965 38 1 5.6533 -5.5698 -0.5656 39 1 6.8918 -4.3927 -0.0626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601365607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:18 Heat of formation + Delta-G solvation = -72.217460 kcal Electronic energy + Delta-G solvation = -24525.163182 eV Core-core repulsion = 21070.727850 eV Total energy + Delta-G solvation = -3454.435333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.76331 -37.54245 -36.21990 -34.87633 -33.95171 -33.52266 -30.29372 -29.63529 -29.34463 -27.18521 -25.57911 -22.67898 -21.71144 -21.22021 -20.81293 -18.69650 -17.73199 -17.03392 -16.80299 -16.19914 -15.46355 -15.34949 -14.94177 -14.43472 -14.34164 -14.19321 -13.60121 -13.34110 -13.22865 -13.06963 -13.05215 -12.78509 -11.98168 -11.75830 -11.61116 -11.44052 -11.37267 -11.32331 -11.19542 -11.11785 -11.06190 -10.99753 -10.76330 -10.58760 -10.39990 -10.02170 -9.93708 -9.48894 -9.45143 -8.91416 -8.07131 -7.65633 -7.64024 -7.07962 -4.80579 1.44341 1.79877 2.30363 2.53979 2.70153 2.92079 2.94026 3.07982 3.72523 3.88811 4.36609 4.62483 4.63600 4.78020 4.81929 4.99424 5.19156 5.23233 5.41016 5.42702 5.53826 5.59247 5.70915 5.78121 5.97373 6.02384 6.10080 6.20888 6.21856 6.35428 6.41949 6.73604 6.90158 7.04307 7.26425 7.42703 7.47338 7.61704 7.77342 7.84841 8.23716 8.45368 8.60589 9.86138 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.005545 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.922944 B = 5047.967630 C = 5601.913974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.086 0.914 9 C 0.189 3.811 10 C -0.158 4.158 11 C -0.075 4.075 12 C -0.248 4.248 13 C -0.003 4.003 14 C -0.775 4.775 15 S 2.697 3.303 16 O -0.995 6.995 17 O -0.963 6.963 18 N -1.115 6.115 19 C 0.164 3.836 20 H 0.098 0.902 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.085 4.085 24 S -0.261 6.261 25 C -0.099 4.099 26 H 0.288 0.712 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.411 0.589 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 -2.087 6.312 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.184 3.816 10 C -0.178 4.178 11 C -0.094 4.094 12 C -0.269 4.269 13 C -0.023 4.023 14 C -0.870 4.870 15 S 2.795 3.205 16 O -0.985 6.985 17 O -0.954 6.954 18 N -0.870 5.870 19 C 0.054 3.946 20 H 0.116 0.884 21 C -0.176 4.176 22 C -0.159 4.159 23 C -0.233 4.233 24 S -0.036 6.036 25 C -0.250 4.250 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.244 0.756 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.472 -3.442 5.444 11.454 hybrid contribution -0.062 2.499 0.479 2.545 sum 9.410 -0.943 5.923 11.159 Atomic orbital electron populations 1.69774 1.07775 1.30295 1.31929 1.25931 0.94857 1.01751 0.91435 0.86269 0.80337 0.79360 0.80535 1.18164 1.19863 1.18321 1.19788 0.97030 0.90949 1.40000 0.89570 1.16976 0.89883 0.89648 0.85065 1.21447 0.98616 0.96735 1.00980 1.20904 0.97428 0.93486 0.97589 1.20500 1.01614 0.96961 1.07803 1.20273 0.93501 0.95160 0.93329 1.29836 1.25915 1.00697 1.30584 1.01235 0.73163 0.72493 0.73630 1.93456 1.85892 1.36499 1.82686 1.93549 1.85273 1.58283 1.58284 1.55899 1.49556 1.35857 1.45736 1.20808 0.96829 0.90793 0.86157 0.88393 1.21861 1.02436 0.99209 0.94069 1.21740 0.98050 0.98139 0.97984 1.23499 1.01036 0.99144 0.99632 1.86913 1.89166 1.16708 1.10780 1.24181 1.01898 1.00164 0.98707 0.90039 0.86023 0.88796 0.88665 0.87348 0.75572 0.91443 0.89136 0.90031 0.90521 0.87935 0.89999 0.86233 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.69 11.00 55.55 0.61 -18.08 16 2 C 0.08 1.91 5.21 -17.34 -0.09 1.82 16 3 Si 0.91 17.36 29.58 -169.99 -5.03 12.33 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.45 -10.84 7.64 -37.74 -0.29 -11.12 16 8 H 0.09 1.91 5.75 -52.49 -0.30 1.61 16 9 C 0.19 4.66 5.53 -106.83 -0.59 4.07 16 10 C -0.16 -3.80 8.66 -38.87 -0.34 -4.14 16 11 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 12 C -0.25 -5.34 10.05 -39.29 -0.39 -5.74 16 13 C 0.00 -0.06 9.53 -39.66 -0.38 -0.44 16 14 C -0.77 -18.05 5.68 -38.87 -0.22 -18.27 16 15 S 2.70 57.27 4.88 -107.50 -0.52 56.74 16 16 O -0.99 -21.92 16.08 -57.17 -0.92 -22.84 16 17 O -0.96 -23.56 16.67 -57.17 -0.95 -24.51 16 18 N -1.12 -18.36 4.52 -5.03 -0.02 -18.39 16 19 C 0.16 2.39 2.50 -68.10 -0.17 2.22 16 20 H 0.10 1.59 7.68 -51.93 -0.40 1.19 16 21 C -0.14 -1.65 5.12 -27.14 -0.14 -1.79 16 22 C -0.12 -1.25 5.76 -26.87 -0.15 -1.41 16 23 C -0.08 -0.84 6.45 37.21 0.24 -0.60 16 24 S -0.26 -3.39 22.33 -107.50 -2.40 -5.79 16 25 C -0.10 -1.36 6.05 37.20 0.23 -1.14 16 26 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 27 H 0.12 2.95 6.34 -52.49 -0.33 2.62 16 28 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.11 2.26 7.33 -52.49 -0.38 1.87 16 31 H 0.41 5.91 8.58 -34.47 -0.30 5.61 16 32 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 1.84 7.46 -51.93 -0.39 1.45 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -29.48 338.97 -11.86 -41.34 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: -2.70 Total: -38.57 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.59 Total: -36.47 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -1.87 Total: -47.36 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -2.92 Total: 50.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.48 -11.86 -41.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601365607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.881 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds