Wall clock time and date at job start Tue Mar 31 2020 14:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38159 * 119.98024 * 2 1 4 4 C 1.38701 * 119.95761 * 180.02562 * 3 2 1 5 5 O 1.35924 * 120.04343 * 180.02562 * 4 3 2 6 6 C 1.42896 * 117.00075 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46884 * 180.02562 * 6 5 4 8 8 O 1.20818 * 120.00374 * 359.97438 * 7 6 5 9 9 O 1.34234 * 119.99942 * 179.97438 * 7 6 5 10 10 C 1.45190 * 117.00202 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47352 * 179.97438 * 10 9 7 12 12 O 1.21295 * 120.00102 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00343 * 179.97438 * 11 10 9 14 14 C 1.37093 * 120.00389 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00082 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00114 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99686 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47153 * 120.00050 * 18 16 14 21 21 H 1.48502 * 109.46932 * 239.99518 * 18 16 14 22 22 C 1.38738 * 119.91880 * 359.97438 * 4 3 2 23 23 C 1.38126 * 119.95522 * 359.97438 * 22 4 3 24 24 C 1.38345 * 119.97676 * 179.97438 * 2 1 3 25 25 Cl 1.73605 * 119.95979 * 359.72660 * 24 2 1 26 26 H 1.08998 * 109.47135 * 270.02403 * 1 2 3 27 27 H 1.08999 * 109.46850 * 30.02744 * 1 2 3 28 28 H 1.08997 * 109.47106 * 150.02405 * 1 2 3 29 29 H 1.08001 * 120.02301 * 359.97434 * 3 2 1 30 30 H 1.08997 * 109.47009 * 299.99128 * 6 5 4 31 31 H 1.08993 * 109.47480 * 59.99649 * 6 5 4 32 32 H 1.09008 * 109.47088 * 299.99557 * 10 9 7 33 33 H 1.09001 * 109.47320 * 59.99476 * 10 9 7 34 34 H 0.97002 * 119.99938 * 0.02562 * 13 11 10 35 35 H 0.97005 * 120.00017 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.02532 * 179.97438 * 22 4 3 37 37 H 1.07994 * 119.98203 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2654 2.3725 0.0000 6 6 5.6923 2.2961 -0.0012 7 6 6.2698 3.6881 0.0002 8 8 5.5350 4.6471 0.0016 9 8 7.6008 3.8625 0.0000 10 6 8.0863 5.2308 0.0009 11 6 9.5933 5.2292 0.0011 12 8 10.1986 4.1781 0.0001 13 7 10.2685 6.3956 0.0013 14 6 11.6395 6.3941 0.0010 15 1 12.1785 5.4582 0.0009 16 6 12.3356 7.5967 0.0018 17 7 11.6798 8.7354 0.0023 18 14 14.2036 7.5945 0.0020 19 1 14.6970 6.1939 0.0019 20 1 14.6996 8.2947 -1.2100 21 1 14.6992 8.2934 1.2150 22 6 4.2759 -0.0066 -0.0005 23 6 3.5822 -1.2010 0.0005 24 6 2.1982 -1.1984 0.0005 25 17 1.3286 -2.7009 0.0084 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6574 2.1321 -0.0004 30 1 6.0283 1.7629 0.8881 31 1 6.0270 1.7644 -0.8918 32 1 7.7234 5.7457 -0.8887 33 1 7.7238 5.7445 0.8913 34 1 9.7845 7.2362 0.0017 35 1 12.1658 9.5750 0.0025 36 1 5.3559 -0.0090 -0.0014 37 1 4.1200 -2.1375 0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:17 Heat of formation + Delta-G solvation = -158.479000 kcal Electronic energy + Delta-G solvation = -23495.474286 eV Core-core repulsion = 19456.668700 eV Total energy + Delta-G solvation = -4038.805586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96045 -41.17075 -40.05597 -39.00571 -37.57768 -37.14443 -36.04591 -33.66646 -33.43371 -31.91087 -30.52109 -29.04957 -27.92337 -26.52607 -23.78955 -23.21371 -21.79838 -21.45988 -20.09455 -19.46990 -18.57776 -18.20359 -18.11140 -17.49674 -17.42038 -16.89506 -16.85391 -16.30180 -15.76659 -15.67007 -15.40886 -14.97041 -14.83666 -14.44854 -14.12611 -14.03544 -13.58744 -13.54307 -13.34746 -13.25940 -13.00015 -12.95575 -12.88822 -12.46995 -12.30497 -12.10745 -11.95174 -11.77538 -11.71053 -11.59226 -11.58416 -10.53624 -10.12742 -9.93573 -9.21057 -8.53206 -6.03846 0.11652 0.18133 0.81159 0.92670 1.19563 1.34517 1.43788 1.58027 1.85500 2.19507 2.37558 2.51487 2.97881 3.12510 3.45674 3.68808 3.74240 3.87737 3.94969 4.02040 4.05828 4.13487 4.20154 4.26567 4.30422 4.62148 4.76634 4.85238 4.93690 5.13623 5.16343 5.20109 5.31228 5.36940 5.50282 5.88002 6.12175 6.42117 6.52655 7.02089 7.38686 7.91574 8.63880 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.042881 B = 0.001691 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.813316 B =16554.148989 C =17181.208793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 C -0.150 4.150 4 C 0.126 3.874 5 O -0.313 6.313 6 C 0.073 3.927 7 C 0.463 3.537 8 O -0.520 6.520 9 O -0.334 6.334 10 C 0.073 3.927 11 C 0.437 3.563 12 O -0.617 6.617 13 N -0.557 5.557 14 C -0.338 4.338 15 H 0.086 0.914 16 C -0.009 4.009 17 N -0.915 5.915 18 Si 0.999 3.001 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.203 4.203 23 C -0.066 4.066 24 C -0.086 4.086 25 Cl -0.067 7.067 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.162 0.838 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.332 -17.719 0.022 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.041 4.041 3 C -0.169 4.169 4 C 0.081 3.919 5 O -0.226 6.226 6 C -0.002 4.002 7 C 0.306 3.694 8 O -0.408 6.408 9 O -0.250 6.250 10 C -0.004 4.004 11 C 0.224 3.776 12 O -0.503 6.503 13 N -0.195 5.195 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.210 4.210 17 N -0.555 5.555 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.222 4.222 23 C -0.084 4.084 24 C -0.113 4.113 25 Cl -0.038 7.038 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.162 0.838 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.180 0.820 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.218 -17.828 0.022 27.713 hybrid contribution 0.719 0.737 0.007 1.029 sum -20.500 -17.091 0.029 26.690 Atomic orbital electron populations 1.20959 0.88379 1.04379 1.03955 1.19756 0.97845 0.90099 0.96399 1.20402 0.90794 0.98977 1.06699 1.19193 0.91998 0.84225 0.96442 1.86045 1.18466 1.29149 1.88980 1.22104 0.79315 0.90234 1.08588 1.23620 0.80498 0.92795 0.72472 1.90696 1.60882 1.43739 1.45497 1.86479 1.23452 1.31511 1.83542 1.22572 0.91578 0.80608 1.05680 1.20049 0.88961 0.84413 0.84224 1.90531 1.70779 1.32235 1.56794 1.41746 1.06930 1.06870 1.63924 1.19770 0.81792 0.94518 1.50587 0.89620 1.26132 1.05369 0.93829 0.95649 1.69676 1.38482 0.98169 1.49155 0.84789 0.76176 0.78495 0.78381 1.19478 1.19526 1.19540 1.21504 1.02014 0.90729 1.07917 1.21098 0.91766 0.99370 0.96216 1.20874 0.92814 0.87045 1.10532 1.98353 1.76702 1.31630 1.97113 0.89454 0.89758 0.90309 0.83751 0.84338 0.84325 0.87326 0.87338 0.76544 0.90971 0.82007 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.61 71.24 0.68 -0.61 16 2 C -0.04 -0.61 5.88 -19.86 -0.12 -0.73 16 3 C -0.15 -2.60 9.64 22.36 0.22 -2.39 16 4 C 0.13 2.34 6.69 22.50 0.15 2.49 16 5 O -0.31 -6.94 9.67 -73.62 -0.71 -7.65 16 6 C 0.07 1.36 5.33 71.24 0.38 1.74 16 7 C 0.46 13.17 8.03 71.24 0.57 13.74 16 8 O -0.52 -17.76 16.25 28.42 0.46 -17.30 16 9 O -0.33 -11.27 9.75 -45.10 -0.44 -11.71 16 10 C 0.07 2.60 5.94 71.23 0.42 3.02 16 11 C 0.44 20.60 7.86 87.66 0.69 21.29 16 12 O -0.62 -33.85 16.08 15.72 0.25 -33.60 16 13 N -0.56 -27.90 5.29 -306.98 -1.62 -29.52 16 14 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 15 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 16 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 17 N -0.91 -47.90 13.05 21.66 0.28 -47.61 16 18 Si 1.00 41.35 29.55 68.60 2.03 43.38 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 C -0.20 -2.91 9.04 22.36 0.20 -2.71 16 23 C -0.07 -0.91 9.82 22.28 0.22 -0.69 16 24 C -0.09 -1.32 6.31 22.33 0.14 -1.17 16 25 Cl -0.07 -0.94 27.29 -2.72 -0.07 -1.01 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.08 0.81 6.90 -2.39 -0.02 0.80 16 29 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.14 1.83 7.66 -2.39 -0.02 1.81 16 31 H 0.14 1.83 7.66 -2.39 -0.02 1.81 16 32 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.11 3.48 8.13 -2.39 -0.02 3.46 16 34 H 0.40 18.89 7.90 -92.71 -0.73 18.15 16 35 H 0.28 13.68 8.31 -92.70 -0.77 12.91 16 36 H 0.16 1.54 6.30 -2.91 -0.02 1.52 16 37 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -70.64 348.09 5.42 -65.22 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.40 Total: 23.59 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 4.84 Total: 16.21 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.34 Total: -77.14 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -0.44 Total: -70.25 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -70.64 5.42 -65.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.261 kcal (2) G-P(sol) polarization free energy of solvation -70.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds