Wall clock time and date at job start Tue Mar 31 2020 15:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99919 * 2 1 4 4 S 1.65594 * 119.99926 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40500 * 336.46641 * 4 2 1 6 6 O 1.42098 * 106.40353 * 203.53956 * 4 2 1 7 7 C 1.76204 * 107.21598 * 90.00023 * 4 2 1 8 8 C 1.35169 * 125.60979 * 89.99991 * 7 4 2 9 9 C 1.40328 * 107.12875 * 180.02562 * 8 7 4 10 10 C 1.36671 * 106.70294 * 359.97438 * 9 8 7 11 11 C 1.46509 * 125.99685 * 180.02562 * 10 9 8 12 12 O 1.21748 * 120.00211 * 7.01034 * 11 10 9 13 13 N 1.34777 * 120.00497 * 187.00770 * 11 10 9 14 14 C 1.36849 * 120.00282 * 184.82805 * 13 11 10 15 15 H 1.07993 * 119.99927 * 336.20638 * 14 13 11 16 16 C 1.39024 * 119.99788 * 156.20188 * 14 13 11 17 17 N 1.31382 * 120.00468 * 355.73661 * 16 14 13 18 18 Si 1.86806 * 119.99942 * 175.73445 * 16 14 13 19 19 H 1.48502 * 109.47147 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46949 * 119.99874 * 18 16 14 21 21 H 1.48495 * 109.47103 * 240.00011 * 18 16 14 22 22 C 1.46503 * 119.99648 * 4.82707 * 13 11 10 23 23 C 1.47201 * 109.47109 * 276.50082 * 22 13 11 24 24 N 5.74507 * 77.90633 * 196.01602 * 2 1 3 25 25 O 1.33957 * 125.61116 * 269.69229 * 7 4 2 26 26 H 1.08999 * 109.46925 * 270.00113 * 1 2 3 27 27 H 1.08997 * 109.47250 * 29.99944 * 1 2 3 28 28 H 1.09000 * 109.47406 * 150.00054 * 1 2 3 29 29 H 1.09004 * 109.47228 * 269.99824 * 3 2 1 30 30 H 1.08999 * 109.47419 * 29.99990 * 3 2 1 31 31 H 1.09000 * 109.47043 * 149.99893 * 3 2 1 32 32 H 1.07996 * 126.43104 * 359.96431 * 8 7 4 33 33 H 1.07994 * 126.64734 * 180.02562 * 9 8 7 34 34 H 0.96998 * 120.00538 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.47109 * 36.49864 * 22 13 11 36 36 H 1.09003 * 109.47140 * 156.49877 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5454 6 8 3.5759 -1.1565 0.5449 7 6 2.5538 -1.8865 -1.6822 8 6 3.6220 -1.5391 -2.4342 9 6 3.4334 -2.1027 -3.7054 10 6 2.2442 -2.7751 -3.6645 11 6 1.6384 -3.5212 -4.7703 12 8 2.2592 -3.6885 -5.8041 13 7 0.3938 -4.0225 -4.6432 14 6 -0.1344 -4.8026 -5.6358 15 1 0.2380 -4.7169 -6.6458 16 6 -1.1504 -5.7055 -5.3438 17 7 -1.5459 -5.8705 -4.1018 18 14 -1.9534 -6.6842 -6.7174 19 1 -1.3318 -6.3176 -8.0153 20 1 -1.7605 -8.1356 -6.4692 21 1 -3.4059 -6.3781 -6.7596 22 6 -0.3937 -3.7322 -3.4424 23 6 -0.0235 -4.6739 -2.3733 24 7 0.2614 -5.3995 -1.5499 25 8 1.7289 -2.6361 -2.4252 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3792 1.5834 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.4621 -0.9395 -2.1165 33 1 4.0993 -2.0217 -4.5517 34 1 -2.2545 -6.5007 -3.8980 35 1 -0.1928 -2.7124 -3.1139 36 1 -1.4546 -3.8385 -3.6690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115927708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:32 Heat of formation + Delta-G solvation = -29.520211 kcal Electronic energy + Delta-G solvation = -26485.386505 eV Core-core repulsion = 22486.509450 eV Total energy + Delta-G solvation = -3998.877056 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.44257 -38.77070 -37.39995 -36.37361 -35.98627 -35.93977 -34.45819 -33.01684 -32.08896 -29.90609 -28.32763 -27.65030 -25.57821 -24.88640 -22.98759 -21.86675 -19.94101 -19.28410 -18.27570 -18.10957 -17.61814 -17.04498 -16.63817 -16.22599 -15.72903 -15.26892 -14.84163 -14.58855 -14.31653 -13.82810 -13.64953 -13.44651 -13.27852 -13.23173 -12.93894 -12.81520 -12.54271 -12.49337 -12.20269 -12.03531 -11.85530 -11.72048 -11.66632 -11.48765 -11.39695 -11.31303 -10.71403 -10.56897 -10.47894 -9.96738 -9.50321 -9.42082 -9.19925 -8.80271 -8.32048 -6.75438 -4.31915 0.12458 0.98885 2.22427 2.73414 3.00373 3.04960 3.12099 3.16098 3.54203 3.60824 3.79445 3.96262 4.16178 4.33173 4.55141 4.59260 4.72230 4.92833 5.10575 5.13521 5.15630 5.33319 5.38733 5.50263 5.56597 5.62485 5.69047 5.76994 5.81516 6.10588 6.21912 6.42492 6.48540 6.86146 7.17075 7.61210 7.97491 8.65031 8.80145 8.85436 9.35378 10.26186 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.004311 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.298314 B = 6493.353657 C = 7113.827105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.001 6.001 3 C 0.080 3.920 4 S 2.720 3.280 5 O -0.929 6.929 6 O -0.941 6.941 7 C -0.597 4.597 8 C -0.085 4.085 9 C -0.184 4.184 10 C 0.028 3.972 11 C 0.501 3.499 12 O -0.552 6.552 13 N -0.410 5.410 14 C -0.303 4.303 15 H 0.117 0.883 16 C 0.034 3.966 17 N -0.867 5.867 18 Si 0.944 3.056 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.275 1.275 22 C 0.215 3.785 23 C 0.246 3.754 24 N -0.458 5.458 25 O -0.108 6.108 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.281 0.719 35 H 0.083 0.917 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 15.316 5.663 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.841 5.841 3 C -0.065 4.065 4 S 2.803 3.197 5 O -0.919 6.919 6 O -0.931 6.931 7 C -0.729 4.729 8 C -0.107 4.107 9 C -0.206 4.206 10 C -0.030 4.030 11 C 0.290 3.710 12 O -0.436 6.436 13 N -0.127 5.127 14 C -0.430 4.430 15 H 0.134 0.866 16 C -0.172 4.172 17 N -0.504 5.504 18 Si 0.769 3.231 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.201 1.201 22 C 0.089 3.911 23 C -0.073 4.073 24 N -0.138 5.138 25 O -0.001 6.001 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.631 13.441 7.245 15.356 hybrid contribution -0.339 -0.113 -1.633 1.672 sum 1.293 13.328 5.611 14.519 Atomic orbital electron populations 1.21601 0.77345 1.03888 1.02718 1.57387 1.15805 1.21543 1.89383 1.21674 0.97367 0.85002 1.02451 1.01683 0.73422 0.72546 0.72003 1.93650 1.65398 1.57755 1.75091 1.93606 1.40536 1.84788 1.74170 1.35774 1.02146 1.13343 1.21660 1.21764 0.97274 0.98725 0.92916 1.21957 0.97985 1.01805 0.98813 1.23644 0.95768 0.99190 0.84363 1.16479 0.82123 0.86357 0.86032 1.90752 1.61803 1.63565 1.27525 1.43661 1.10603 1.42183 1.16212 1.19990 1.17020 1.15341 0.90674 0.86571 1.25590 0.97263 0.96472 0.97847 1.69751 1.28410 1.34643 1.17628 0.85572 0.78536 0.79005 0.80008 1.18728 1.20310 1.20076 1.19026 1.00413 0.91776 0.79895 1.28728 0.92218 0.93483 0.92859 1.80814 1.09742 1.10517 1.12685 1.84465 1.41689 1.53788 1.20157 0.91826 0.90557 0.90264 0.92361 0.90195 0.89774 0.81779 0.81737 0.90760 0.89906 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.29 59.85 0.62 1.40 16 2 N -1.00 -10.40 3.58 -129.20 -0.46 -10.86 16 3 C 0.08 0.59 10.66 59.84 0.64 1.23 16 4 S 2.72 39.64 5.80 -107.50 -0.62 39.01 16 5 O -0.93 -16.86 17.09 -57.27 -0.98 -17.84 16 6 O -0.94 -14.40 16.43 -57.17 -0.94 -15.34 16 7 C -0.60 -9.82 7.35 29.64 0.22 -9.60 16 8 C -0.09 -1.28 10.58 -39.89 -0.42 -1.70 16 9 C -0.18 -3.18 10.63 -39.36 -0.42 -3.60 16 10 C 0.03 0.58 6.62 -36.82 -0.24 0.33 16 11 C 0.50 11.81 7.52 -12.93 -0.10 11.71 16 12 O -0.55 -14.27 16.56 5.15 0.09 -14.18 16 13 N -0.41 -9.67 2.60 -119.48 -0.31 -9.98 16 14 C -0.30 -7.47 9.31 -15.02 -0.14 -7.61 16 15 H 0.12 2.93 7.37 -52.49 -0.39 2.54 16 16 C 0.03 0.80 5.22 -17.45 -0.09 0.71 16 17 N -0.87 -20.87 8.89 55.50 0.49 -20.38 16 18 Si 0.94 18.65 29.56 -169.99 -5.02 13.63 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 22 C 0.22 4.53 4.75 -6.83 -0.03 4.49 16 23 C 0.25 5.84 11.83 -20.83 -0.25 5.60 16 24 N -0.46 -11.77 18.52 42.07 0.78 -10.99 16 25 O -0.11 -2.08 6.31 4.88 0.03 -2.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.08 0.78 7.79 -51.93 -0.40 0.37 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.63 7.02 -51.93 -0.36 0.26 16 32 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 34 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.08 1.47 6.06 -51.93 -0.31 1.16 16 36 H 0.14 2.94 6.31 -51.93 -0.33 2.61 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -33.56 332.83 -5.62 -39.17 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.46 Total: 1.82 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.22 Total: 2.97 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.50 Total: -52.21 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -1.80 Total: -49.41 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Atomic # 16 Polarization: 39.64 SS G_CDS: -0.62 Total: 39.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.56 -5.62 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115927708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.653 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds