Wall clock time and date at job start Tue Mar 31 2020 15:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99919 * 2 1 4 4 S 1.65594 * 119.99926 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40500 * 336.46641 * 4 2 1 6 6 O 1.42098 * 106.40353 * 203.53956 * 4 2 1 7 7 C 1.76204 * 107.21598 * 90.00023 * 4 2 1 8 8 C 1.35169 * 125.60979 * 89.99991 * 7 4 2 9 9 C 1.40328 * 107.12875 * 180.02562 * 8 7 4 10 10 C 1.36671 * 106.70294 * 359.97438 * 9 8 7 11 11 C 1.46509 * 125.99685 * 180.02562 * 10 9 8 12 12 O 1.21748 * 120.00211 * 7.01034 * 11 10 9 13 13 N 1.34777 * 120.00497 * 187.00770 * 11 10 9 14 14 C 1.36849 * 120.00282 * 184.82805 * 13 11 10 15 15 H 1.07993 * 119.99927 * 336.20638 * 14 13 11 16 16 C 1.39024 * 119.99788 * 156.20188 * 14 13 11 17 17 N 1.31382 * 120.00468 * 355.73661 * 16 14 13 18 18 Si 1.86806 * 119.99942 * 175.73445 * 16 14 13 19 19 H 1.48502 * 109.47147 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46949 * 119.99874 * 18 16 14 21 21 H 1.48495 * 109.47103 * 240.00011 * 18 16 14 22 22 C 1.46503 * 119.99648 * 4.82707 * 13 11 10 23 23 C 1.47201 * 109.47109 * 276.50082 * 22 13 11 24 24 N 5.74507 * 77.90633 * 196.01602 * 2 1 3 25 25 O 1.33957 * 125.61116 * 269.69229 * 7 4 2 26 26 H 1.08999 * 109.46925 * 270.00113 * 1 2 3 27 27 H 1.08997 * 109.47250 * 29.99944 * 1 2 3 28 28 H 1.09000 * 109.47406 * 150.00054 * 1 2 3 29 29 H 1.09004 * 109.47228 * 269.99824 * 3 2 1 30 30 H 1.08999 * 109.47419 * 29.99990 * 3 2 1 31 31 H 1.09000 * 109.47043 * 149.99893 * 3 2 1 32 32 H 1.07996 * 126.43104 * 359.96431 * 8 7 4 33 33 H 1.07994 * 126.64734 * 180.02562 * 9 8 7 34 34 H 0.96998 * 120.00538 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.47109 * 36.49864 * 22 13 11 36 36 H 1.09003 * 109.47140 * 156.49877 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5454 6 8 3.5759 -1.1565 0.5449 7 6 2.5538 -1.8865 -1.6822 8 6 3.6220 -1.5391 -2.4342 9 6 3.4334 -2.1027 -3.7054 10 6 2.2442 -2.7751 -3.6645 11 6 1.6384 -3.5212 -4.7703 12 8 2.2592 -3.6885 -5.8041 13 7 0.3938 -4.0225 -4.6432 14 6 -0.1344 -4.8026 -5.6358 15 1 0.2380 -4.7169 -6.6458 16 6 -1.1504 -5.7055 -5.3438 17 7 -1.5459 -5.8705 -4.1018 18 14 -1.9534 -6.6842 -6.7174 19 1 -1.3318 -6.3176 -8.0153 20 1 -1.7605 -8.1356 -6.4692 21 1 -3.4059 -6.3781 -6.7596 22 6 -0.3937 -3.7322 -3.4424 23 6 -0.0235 -4.6739 -2.3733 24 7 0.2614 -5.3995 -1.5499 25 8 1.7289 -2.6361 -2.4252 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3792 1.5834 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.4621 -0.9395 -2.1165 33 1 4.0993 -2.0217 -4.5517 34 1 -2.2545 -6.5007 -3.8980 35 1 -0.1928 -2.7124 -3.1139 36 1 -1.4546 -3.8385 -3.6690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115927708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:31 Heat of formation + Delta-G solvation = -54.487679 kcal Electronic energy + Delta-G solvation = -26486.469176 eV Core-core repulsion = 22486.509450 eV Total energy + Delta-G solvation = -3999.959726 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.86644 -40.55683 -38.62129 -37.84520 -37.25863 -37.06565 -36.35811 -34.44155 -33.86071 -31.37276 -29.41435 -28.95518 -27.30150 -25.66096 -24.52656 -23.22033 -21.51605 -20.47234 -19.95335 -19.46729 -18.86652 -18.52996 -18.28207 -17.25988 -17.20963 -17.01477 -15.99881 -15.75158 -15.50214 -15.40432 -15.21984 -15.11842 -14.72945 -14.35155 -14.15951 -14.02740 -13.86746 -13.63837 -13.52609 -13.44948 -13.30501 -13.22512 -12.98498 -12.83087 -12.66172 -12.59228 -12.53360 -12.25928 -12.08049 -11.32107 -11.27286 -11.07511 -10.32923 -10.15790 -10.07178 -8.54169 -6.20842 -1.00811 -0.43634 0.86553 1.41544 1.43250 1.50327 1.59541 1.78677 1.89242 2.07425 2.24707 2.33027 2.43149 2.84957 2.91792 3.26065 3.45238 3.68010 3.72410 3.83033 4.20640 4.28782 4.48730 4.51909 4.59397 4.62064 4.78968 4.81731 4.98838 5.01100 5.06107 5.08375 5.30970 5.41843 5.52672 5.83688 6.16672 6.82014 6.94324 7.03091 7.54149 8.46577 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.004311 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.298314 B = 6493.353657 C = 7113.827105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.988 5.988 3 C 0.068 3.932 4 S 2.731 3.269 5 O -0.969 6.969 6 O -0.948 6.948 7 C -0.596 4.596 8 C -0.074 4.074 9 C -0.165 4.165 10 C -0.014 4.014 11 C 0.501 3.499 12 O -0.586 6.586 13 N -0.423 5.423 14 C -0.334 4.334 15 H 0.101 0.899 16 C 0.006 3.994 17 N -0.888 5.888 18 Si 1.005 2.995 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.259 1.259 22 C 0.220 3.780 23 C 0.260 3.740 24 N -0.498 5.498 25 O -0.123 6.123 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.208 0.792 33 H 0.181 0.819 34 H 0.283 0.717 35 H 0.116 0.884 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 17.703 6.201 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.831 5.831 3 C -0.076 4.076 4 S 2.812 3.188 5 O -0.959 6.959 6 O -0.938 6.938 7 C -0.725 4.725 8 C -0.095 4.095 9 C -0.186 4.186 10 C -0.071 4.071 11 C 0.291 3.709 12 O -0.473 6.473 13 N -0.139 5.139 14 C -0.461 4.461 15 H 0.119 0.881 16 C -0.197 4.197 17 N -0.526 5.526 18 Si 0.827 3.173 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.183 1.183 22 C 0.094 3.906 23 C -0.058 4.058 24 N -0.179 5.179 25 O -0.017 6.017 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.225 0.775 33 H 0.198 0.802 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.858 15.836 7.774 17.739 hybrid contribution -0.291 -0.657 -1.661 1.810 sum 1.566 15.179 6.113 16.439 Atomic orbital electron populations 1.21879 0.76164 1.04794 1.03843 1.57149 1.16424 1.20972 1.88579 1.22040 0.97598 0.83844 1.04087 1.01349 0.73062 0.72985 0.71372 1.93604 1.66363 1.60241 1.75707 1.93587 1.41171 1.85022 1.74022 1.36477 1.02100 1.11841 1.22094 1.22224 0.97787 0.98162 0.91309 1.22313 0.96465 0.99661 1.00164 1.23157 0.97361 1.02062 0.84518 1.16871 0.81866 0.85809 0.86403 1.90702 1.62629 1.64791 1.29165 1.43774 1.11086 1.42427 1.16638 1.19985 1.18381 1.17137 0.90632 0.88150 1.26278 0.97054 0.96602 0.99791 1.69821 1.28796 1.35108 1.18833 0.84684 0.78364 0.76833 0.77380 1.18819 1.21132 1.18339 1.19221 1.00194 0.92672 0.78486 1.29256 0.91057 0.92981 0.92522 1.80797 1.11144 1.11850 1.14084 1.84409 1.42660 1.54708 1.19959 0.90725 0.87276 0.91762 0.90687 0.87241 0.89874 0.77518 0.80200 0.90639 0.86686 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.29 127.77 1.31 2.47 16 2 N -0.99 -17.65 3.58 -562.68 -2.02 -19.67 16 3 C 0.07 0.72 10.66 127.77 1.36 2.09 16 4 S 2.73 74.83 5.80 -56.49 -0.33 74.50 16 5 O -0.97 -34.86 17.09 -127.91 -2.19 -37.05 16 6 O -0.95 -26.84 16.43 -128.00 -2.10 -28.94 16 7 C -0.60 -18.48 7.35 67.11 0.49 -17.98 16 8 C -0.07 -2.00 10.58 22.07 0.23 -1.76 16 9 C -0.16 -5.39 10.63 22.41 0.24 -5.15 16 10 C -0.01 -0.58 6.62 24.06 0.16 -0.42 16 11 C 0.50 24.05 7.52 86.40 0.65 24.70 16 12 O -0.59 -31.09 16.56 -4.50 -0.07 -31.17 16 13 N -0.42 -20.41 2.60 -650.12 -1.69 -22.10 16 14 C -0.33 -16.94 9.31 84.10 0.78 -16.15 16 15 H 0.10 5.28 7.37 -2.91 -0.02 5.26 16 16 C 0.01 0.29 5.22 84.95 0.44 0.74 16 17 N -0.89 -43.26 8.89 21.68 0.19 -43.07 16 18 Si 1.00 38.49 29.56 68.60 2.03 40.52 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.29 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 22 C 0.22 9.35 4.75 84.57 0.40 9.75 16 23 C 0.26 12.55 11.83 89.47 1.06 13.61 16 24 N -0.50 -26.12 18.52 19.98 0.37 -25.75 16 25 O -0.12 -4.67 6.31 -5.46 -0.03 -4.71 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 0.92 8.07 -2.39 -0.02 0.90 16 28 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 31 H 0.08 0.94 7.02 -2.39 -0.02 0.92 16 32 H 0.21 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 34 H 0.28 13.15 8.31 -92.71 -0.77 12.37 16 35 H 0.12 4.07 6.06 -2.39 -0.01 4.06 16 36 H 0.15 6.10 6.31 -2.39 -0.02 6.08 16 Total: -1.00 -74.62 332.83 2.44 -72.18 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.14 Total: 13.35 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 7.14 Total: 11.90 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -3.14 Total: -110.58 kcal Atomic # 8 Polarization: -97.47 SS G_CDS: -4.40 Total: -101.86 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: 74.83 SS G_CDS: -0.33 Total: 74.50 kcal Total: -74.62 2.44 -72.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115927708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.696 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds