Wall clock time and date at job start Tue Mar 31 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47254 * 2 1 4 4 C 1.53006 * 109.47053 * 119.99761 * 2 1 3 5 5 C 1.53002 * 109.47146 * 295.35950 * 4 2 1 6 6 C 1.50701 * 109.47021 * 185.15046 * 5 4 2 7 7 H 1.08004 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99622 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00430 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99532 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47335 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47076 * 120.00206 * 10 8 6 13 13 H 1.48502 * 109.47427 * 239.99858 * 10 8 6 14 14 N 1.46899 * 109.47839 * 239.99897 * 2 1 3 15 15 C 1.47074 * 110.99041 * 51.56266 * 14 2 1 16 16 C 1.53411 * 109.60467 * 53.29631 * 15 14 2 17 17 N 1.46524 * 108.26959 * 49.66715 * 16 15 14 18 18 C 1.36038 * 128.68423 * 163.59220 * 17 16 15 19 19 Br 1.89104 * 126.68642 * 0.17942 * 18 17 16 20 20 C 1.35039 * 106.62927 * 180.17679 * 18 17 16 21 21 N 1.34385 * 108.09141 * 359.96474 * 20 18 17 22 22 C 1.29876 * 109.20939 * 359.94153 * 21 20 18 23 23 C 1.47317 * 111.00619 * 175.78058 * 14 2 1 24 24 H 1.08994 * 109.47280 * 300.00096 * 1 2 3 25 25 H 1.09000 * 109.46733 * 60.00540 * 1 2 3 26 26 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46710 * 55.36287 * 4 2 1 28 28 H 1.09003 * 109.46967 * 175.36059 * 4 2 1 29 29 H 1.09000 * 109.46947 * 305.15220 * 5 4 2 30 30 H 1.09002 * 109.46637 * 65.15270 * 5 4 2 31 31 H 0.97003 * 120.00465 * 179.97438 * 9 8 6 32 32 H 1.08993 * 109.49784 * 293.23335 * 15 14 2 33 33 H 1.09003 * 109.43413 * 173.31449 * 15 14 2 34 34 H 1.08991 * 109.71277 * 289.95445 * 16 15 14 35 35 H 1.09005 * 109.70922 * 169.36720 * 16 15 14 36 36 H 1.07999 * 125.95046 * 179.97438 * 20 18 17 37 37 H 1.08997 * 109.74099 * 166.46178 * 23 14 2 38 38 H 1.09003 * 109.73451 * 45.75739 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6275 0.0643 2.4958 6 6 2.2359 -0.5756 3.7170 7 1 2.8546 -1.4550 3.6144 8 6 2.0019 -0.0392 4.9654 9 7 1.2474 1.0306 5.0905 10 14 2.7555 -0.8328 6.4792 11 1 3.5561 -2.0152 6.0716 12 1 3.6350 0.1470 7.1659 13 1 1.6749 -1.2609 7.4036 14 7 2.0198 -0.6925 -1.1994 15 6 1.3907 -0.1517 -2.4138 16 6 1.5759 1.3706 -2.4552 17 7 2.9904 1.6680 -2.2148 18 6 3.6692 2.8223 -2.4543 19 35 2.9625 4.4185 -3.1813 20 6 4.9461 2.6062 -2.0716 21 7 5.0360 1.3474 -1.6098 22 6 3.8711 0.7787 -1.6898 23 6 3.4889 -0.6251 -1.2850 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6104 -1.7221 1.2918 28 1 3.1268 -0.7938 1.2087 29 1 1.9798 1.0923 2.4105 30 1 0.5412 0.0588 2.5857 31 1 1.0824 1.4079 5.9688 32 1 0.3267 -0.3877 -2.4083 33 1 1.8561 -0.5978 -3.2928 34 1 0.9656 1.8364 -1.6816 35 1 1.2817 1.7503 -3.4338 36 1 5.7541 3.3206 -2.1269 37 1 3.8471 -1.3339 -2.0316 38 1 3.9254 -0.8600 -0.3142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:54 Heat of formation + Delta-G solvation = 68.157457 kcal Electronic energy + Delta-G solvation = -20574.823133 eV Core-core repulsion = 17499.543402 eV Total energy + Delta-G solvation = -3075.279732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.064 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.59998 -38.78960 -34.77089 -33.59451 -32.37734 -31.50928 -30.46000 -28.79155 -28.24356 -25.37426 -24.81755 -23.62784 -21.48944 -21.43858 -20.20820 -18.27351 -17.27781 -16.61273 -16.26536 -15.58896 -15.18688 -14.61839 -14.40104 -14.20707 -14.09911 -13.72141 -13.08503 -12.68766 -12.52190 -12.39609 -12.14477 -11.73824 -11.58930 -11.29344 -11.20581 -11.05816 -10.94716 -10.84377 -10.52292 -10.33695 -10.04209 -9.73631 -9.68059 -9.35840 -9.04670 -8.53989 -8.37919 -8.33315 -5.99833 -4.01689 1.09125 1.67901 2.59197 2.95445 3.32217 3.39829 3.44185 3.75494 4.15360 4.35933 4.47165 4.61013 4.77552 4.95424 5.21065 5.22106 5.29620 5.34131 5.36790 5.49955 5.58538 5.70890 5.74140 5.95758 6.09578 6.22294 6.38881 6.49905 6.56359 6.57888 6.86372 6.90612 7.11380 7.15360 7.66680 7.80086 7.88566 7.99560 8.42841 9.05322 9.62638 11.11644 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.003582 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.567650 B = 7814.201267 C = 8266.750823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.040 0.960 4 C -0.101 4.101 5 C 0.024 3.976 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.522 5.522 15 C 0.041 3.959 16 C 0.059 3.941 17 N -0.441 5.441 18 C -0.039 4.039 19 Br 0.011 6.989 20 C 0.022 3.978 21 N -0.475 5.475 22 C 0.209 3.791 23 C 0.132 3.868 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.011 0.989 30 H 0.019 0.981 31 H 0.259 0.741 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.179 0.821 37 H 0.105 0.895 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 4.010 -21.507 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 H 0.058 0.942 4 C -0.139 4.139 5 C -0.013 4.013 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.244 5.244 15 C -0.088 4.088 16 C -0.065 4.065 17 N -0.125 5.125 18 C -0.231 4.231 19 Br 0.093 6.907 20 C -0.130 4.130 21 N -0.194 5.194 22 C -0.057 4.057 23 C 0.002 3.998 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.196 0.804 37 H 0.123 0.877 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.310 3.813 -21.334 21.674 hybrid contribution -0.019 0.921 0.641 1.122 sum 0.291 4.733 -20.692 21.229 Atomic orbital electron populations 1.21983 0.94207 1.02627 1.01601 1.21983 0.95741 0.95916 0.89758 0.94241 1.21747 0.99638 0.99529 0.92992 1.19106 0.96776 0.94915 0.90507 1.21273 1.30468 1.12380 0.91494 0.92572 1.25008 0.95273 0.94993 0.99127 1.69966 1.38328 1.21824 1.23482 0.86558 0.79072 0.79446 0.83086 1.19646 1.21049 1.21036 1.62574 1.04176 1.55296 1.02357 1.22650 1.02812 0.88991 0.94348 1.22892 0.78899 1.00855 1.03819 1.45239 1.10258 1.10042 1.46971 1.22711 0.95104 0.88962 1.16347 1.96709 1.86317 1.24519 1.83142 1.22415 0.93881 0.94645 1.02084 1.70160 1.22003 1.06651 1.20536 1.24555 0.85085 0.96218 0.99832 1.21227 0.88111 0.85907 1.04568 0.90699 0.93875 0.91644 0.92278 0.92994 0.97106 0.96272 0.93103 0.87420 0.89702 0.88649 0.88779 0.80413 0.87749 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.22 37.16 0.31 -1.81 16 2 C 0.07 1.17 1.45 -67.71 -0.10 1.07 16 3 H 0.04 0.72 6.18 -51.93 -0.32 0.40 16 4 C -0.10 -2.02 4.65 -26.73 -0.12 -2.14 16 5 C 0.02 0.62 4.59 -27.88 -0.13 0.49 16 6 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.52 -6.82 4.83 -227.12 -1.10 -7.92 16 15 C 0.04 0.41 5.34 -3.52 -0.02 0.39 16 16 C 0.06 0.64 6.00 -3.82 -0.02 0.61 16 17 N -0.44 -6.01 2.88 -111.75 -0.32 -6.33 16 18 C -0.04 -0.53 7.43 -16.82 -0.12 -0.65 16 19 Br 0.01 0.12 33.96 -68.01 -2.31 -2.19 16 20 C 0.02 0.32 11.85 -17.57 -0.21 0.12 16 21 N -0.48 -7.84 11.24 -10.54 -0.12 -7.96 16 22 C 0.21 3.15 7.02 -155.15 -1.09 2.06 16 23 C 0.13 1.77 6.07 -4.59 -0.03 1.74 16 24 H 0.07 1.25 6.67 -51.93 -0.35 0.90 16 25 H 0.04 0.49 5.48 -51.93 -0.28 0.21 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 1.05 6.06 -51.93 -0.31 0.73 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.02 0.50 6.81 -51.93 -0.35 0.15 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.11 0.91 6.64 -51.93 -0.34 0.57 16 33 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.10 1.11 6.13 -51.93 -0.32 0.79 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.18 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.12 1.80 5.84 -51.93 -0.30 1.50 16 LS Contribution 316.93 15.07 4.78 4.78 Total: -1.00 -31.65 316.93 -10.39 -42.04 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.08 Total: -1.41 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.95 Total: -11.51 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.80 Total: -48.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -2.31 Total: -2.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.65 -10.39 -42.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.193 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds