Wall clock time and date at job start Tue Mar 31 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47254 * 2 1 4 4 C 1.53006 * 109.47053 * 119.99761 * 2 1 3 5 5 C 1.53002 * 109.47146 * 295.35950 * 4 2 1 6 6 C 1.50701 * 109.47021 * 185.15046 * 5 4 2 7 7 H 1.08004 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99622 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00430 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99532 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47335 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47076 * 120.00206 * 10 8 6 13 13 H 1.48502 * 109.47427 * 239.99858 * 10 8 6 14 14 N 1.46899 * 109.47839 * 239.99897 * 2 1 3 15 15 C 1.47074 * 110.99041 * 51.56266 * 14 2 1 16 16 C 1.53411 * 109.60467 * 53.29631 * 15 14 2 17 17 N 1.46524 * 108.26959 * 49.66715 * 16 15 14 18 18 C 1.36038 * 128.68423 * 163.59220 * 17 16 15 19 19 Br 1.89104 * 126.68642 * 0.17942 * 18 17 16 20 20 C 1.35039 * 106.62927 * 180.17679 * 18 17 16 21 21 N 1.34385 * 108.09141 * 359.96474 * 20 18 17 22 22 C 1.29876 * 109.20939 * 359.94153 * 21 20 18 23 23 C 1.47317 * 111.00619 * 175.78058 * 14 2 1 24 24 H 1.08994 * 109.47280 * 300.00096 * 1 2 3 25 25 H 1.09000 * 109.46733 * 60.00540 * 1 2 3 26 26 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46710 * 55.36287 * 4 2 1 28 28 H 1.09003 * 109.46967 * 175.36059 * 4 2 1 29 29 H 1.09000 * 109.46947 * 305.15220 * 5 4 2 30 30 H 1.09002 * 109.46637 * 65.15270 * 5 4 2 31 31 H 0.97003 * 120.00465 * 179.97438 * 9 8 6 32 32 H 1.08993 * 109.49784 * 293.23335 * 15 14 2 33 33 H 1.09003 * 109.43413 * 173.31449 * 15 14 2 34 34 H 1.08991 * 109.71277 * 289.95445 * 16 15 14 35 35 H 1.09005 * 109.70922 * 169.36720 * 16 15 14 36 36 H 1.07999 * 125.95046 * 179.97438 * 20 18 17 37 37 H 1.08997 * 109.74099 * 166.46178 * 23 14 2 38 38 H 1.09003 * 109.73451 * 45.75739 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6275 0.0643 2.4958 6 6 2.2359 -0.5756 3.7170 7 1 2.8546 -1.4550 3.6144 8 6 2.0019 -0.0392 4.9654 9 7 1.2474 1.0306 5.0905 10 14 2.7555 -0.8328 6.4792 11 1 3.5561 -2.0152 6.0716 12 1 3.6350 0.1470 7.1659 13 1 1.6749 -1.2609 7.4036 14 7 2.0198 -0.6925 -1.1994 15 6 1.3907 -0.1517 -2.4138 16 6 1.5759 1.3706 -2.4552 17 7 2.9904 1.6680 -2.2148 18 6 3.6692 2.8223 -2.4543 19 35 2.9625 4.4185 -3.1813 20 6 4.9461 2.6062 -2.0716 21 7 5.0360 1.3474 -1.6098 22 6 3.8711 0.7787 -1.6898 23 6 3.4889 -0.6251 -1.2850 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6104 -1.7221 1.2918 28 1 3.1268 -0.7938 1.2087 29 1 1.9798 1.0923 2.4105 30 1 0.5412 0.0588 2.5857 31 1 1.0824 1.4079 5.9688 32 1 0.3267 -0.3877 -2.4083 33 1 1.8561 -0.5978 -3.2928 34 1 0.9656 1.8364 -1.6816 35 1 1.2817 1.7503 -3.4338 36 1 5.7541 3.3206 -2.1269 37 1 3.8471 -1.3339 -2.0316 38 1 3.9254 -0.8600 -0.3142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:53 Heat of formation + Delta-G solvation = 48.078568 kcal Electronic energy + Delta-G solvation = -20575.693819 eV Core-core repulsion = 17499.543402 eV Total energy + Delta-G solvation = -3076.150418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.064 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.64988 -39.92212 -36.25515 -35.02429 -33.97730 -32.65842 -31.63791 -30.20732 -29.38630 -27.07217 -25.87199 -24.98766 -23.00072 -22.51919 -21.59448 -19.49633 -18.52137 -18.25741 -17.45537 -16.93706 -16.44649 -16.13134 -15.88546 -15.34288 -15.23132 -14.71494 -14.38831 -14.30014 -13.85177 -13.70241 -13.48864 -13.12217 -12.91737 -12.74711 -12.71272 -12.44009 -12.33111 -12.07843 -11.92955 -11.79785 -11.47692 -11.32408 -11.11932 -11.04744 -10.75681 -10.54862 -9.64363 -9.42643 -8.20915 -6.31172 0.07654 0.62234 1.38719 1.39590 1.52729 1.63215 1.83937 2.40130 2.70787 3.12855 3.16123 3.44973 3.77946 3.79666 3.98323 4.02549 4.12279 4.28619 4.32064 4.39745 4.55156 4.61690 4.76375 4.81465 4.89161 4.91515 4.98248 5.03086 5.19925 5.36914 5.37890 5.51010 5.70561 5.81895 5.85023 5.86085 5.95389 6.26318 6.79831 6.86060 7.38206 8.91100 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.003582 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.567650 B = 7814.201267 C = 8266.750823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.015 0.985 4 C -0.089 4.089 5 C 0.033 3.967 6 C -0.541 4.541 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.275 1.275 14 N -0.517 5.517 15 C 0.042 3.958 16 C 0.054 3.946 17 N -0.441 5.441 18 C -0.044 4.044 19 Br 0.037 6.963 20 C 0.001 3.999 21 N -0.510 5.510 22 C 0.194 3.806 23 C 0.134 3.866 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.045 0.955 29 H -0.025 1.025 30 H 0.003 0.997 31 H 0.263 0.737 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.194 0.806 37 H 0.132 0.868 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 3.156 -22.965 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 H 0.033 0.967 4 C -0.127 4.127 5 C -0.005 4.005 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.201 1.201 14 N -0.238 5.238 15 C -0.086 4.086 16 C -0.068 4.068 17 N -0.125 5.125 18 C -0.237 4.237 19 Br 0.120 6.880 20 C -0.150 4.150 21 N -0.229 5.229 22 C -0.072 4.072 23 C 0.004 3.996 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.063 0.937 29 H -0.007 1.007 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.211 0.789 37 H 0.150 0.850 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.215 2.947 -22.814 23.004 hybrid contribution 0.132 1.270 1.045 1.650 sum -0.083 4.217 -21.769 22.174 Atomic orbital electron populations 1.21917 0.92719 1.03284 1.01921 1.21609 0.96728 0.94053 0.89625 0.96736 1.21505 0.99306 0.99163 0.92753 1.18948 0.95384 0.93516 0.92626 1.21737 1.30619 1.12645 0.92862 0.92304 1.25937 0.95656 0.95485 1.02592 1.70094 1.39627 1.23263 1.24442 0.85455 0.78394 0.78702 0.78878 1.18505 1.20699 1.20087 1.62510 1.04059 1.54780 1.02450 1.22862 1.04146 0.88312 0.93274 1.23127 0.77259 1.01521 1.04938 1.45428 1.11104 1.09680 1.46289 1.23021 0.95136 0.89849 1.15703 1.96724 1.85870 1.22820 1.82631 1.22792 0.95104 0.94565 1.02588 1.70094 1.23354 1.07844 1.21648 1.24786 0.85240 0.96964 1.00187 1.21277 0.88250 0.85878 1.04245 0.93682 0.90286 0.90738 0.91817 0.93675 1.00699 0.97891 0.92858 0.85004 0.87488 0.89541 0.86089 0.78887 0.85023 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.22 71.98 0.59 -3.31 16 2 C 0.09 2.78 1.45 44.92 0.06 2.85 16 3 H 0.01 0.54 6.18 -2.38 -0.01 0.53 16 4 C -0.09 -3.63 4.65 30.60 0.14 -3.49 16 5 C 0.03 1.73 4.59 29.85 0.14 1.87 16 6 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 7 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 8 C 0.00 0.05 5.46 84.66 0.46 0.51 16 9 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 10 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 N -0.52 -12.53 4.83 -872.47 -4.22 -16.75 16 15 C 0.04 0.69 5.34 86.41 0.46 1.15 16 16 C 0.05 1.03 6.00 86.51 0.52 1.55 16 17 N -0.44 -11.50 2.88 -507.48 -1.46 -12.96 16 18 C -0.04 -1.16 7.43 83.30 0.62 -0.54 16 19 Br 0.04 0.76 33.96 -20.37 -0.69 0.06 16 20 C 0.00 0.04 11.85 83.57 0.99 1.03 16 21 N -0.51 -17.00 11.24 -187.25 -2.10 -19.11 16 22 C 0.19 5.77 7.02 138.19 0.97 6.74 16 23 C 0.13 3.46 6.07 85.58 0.52 3.98 16 24 H 0.04 1.52 6.67 -2.39 -0.02 1.50 16 25 H 0.08 1.59 5.48 -2.39 -0.01 1.58 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.04 1.87 6.06 -2.39 -0.01 1.86 16 29 H -0.03 -1.50 8.14 -2.39 -0.02 -1.52 16 30 H 0.00 0.15 6.81 -2.39 -0.02 0.14 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.13 1.61 6.64 -2.39 -0.02 1.60 16 33 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.09 1.84 6.13 -2.39 -0.01 1.82 16 35 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.10 3.01 5.84 -2.39 -0.01 3.00 16 Total: -1.00 -70.35 316.93 0.62 -69.74 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.07 Total: 7.88 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.71 Total: -18.64 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -7.50 Total: -106.07 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 35 Polarization: 0.76 SS G_CDS: -0.69 Total: 0.06 kcal Total: -70.35 0.62 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.814 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds