Wall clock time and date at job start Tue Mar 31 2020 14:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47312 * 2 1 4 4 C 1.46492 * 120.00230 * 270.00379 * 3 2 1 5 5 C 1.50697 * 109.47082 * 269.99711 * 4 3 2 6 6 H 1.08002 * 120.00333 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99836 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47427 * 60.00309 * 9 7 5 11 11 H 1.48504 * 109.47228 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47303 * 299.99935 * 9 7 5 13 13 C 1.34776 * 119.99584 * 90.00099 * 3 2 1 14 14 O 1.21587 * 119.99875 * 179.97438 * 13 3 2 15 15 N 1.34775 * 120.00378 * 359.97438 * 13 3 2 16 16 C 1.39944 * 120.00340 * 184.59031 * 15 13 3 17 17 C 1.38902 * 120.06212 * 145.14116 * 16 15 13 18 18 C 1.38096 * 119.95062 * 180.27838 * 17 16 15 19 19 C 1.38280 * 120.08915 * 359.49219 * 18 17 16 20 20 N 1.48020 * 119.93862 * 180.23352 * 19 18 17 21 21 O 1.21794 * 120.00037 * 0.02562 * 20 19 18 22 22 O 1.21801 * 119.99447 * 179.97438 * 20 19 18 23 23 C 1.38385 * 120.12045 * 0.25429 * 19 18 17 24 24 Cl 1.73601 * 119.97399 * 180.02562 * 23 19 18 25 25 C 1.38248 * 120.04815 * 0.02562 * 23 19 18 26 26 H 1.09002 * 109.47180 * 59.99559 * 1 2 3 27 27 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47213 * 300.00053 * 1 2 3 29 29 H 1.09005 * 109.46647 * 240.00393 * 2 1 3 30 30 H 1.08996 * 109.46756 * 120.00299 * 2 1 3 31 31 H 1.09002 * 109.47408 * 29.99598 * 4 3 2 32 32 H 1.08999 * 109.47567 * 149.99808 * 4 3 2 33 33 H 0.96998 * 120.00137 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99771 * 4.59597 * 15 13 3 35 35 H 1.07999 * 120.02256 * 0.02755 * 17 16 15 36 36 H 1.08005 * 119.95503 * 179.77174 * 18 17 16 37 37 H 1.07998 * 120.04457 * 179.97438 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9131 2.0956 -3.4175 10 1 6.1402 0.6389 -3.5949 11 1 6.1607 2.7958 -4.7035 12 1 6.8411 2.6189 -2.3829 13 6 2.2431 2.0164 1.1672 14 8 2.6488 3.1626 1.1673 15 7 2.0179 1.3813 2.3344 16 6 2.1586 2.0701 3.5445 17 6 1.3195 1.7790 4.6124 18 6 1.4566 2.4642 5.8036 19 6 2.4350 3.4322 5.9379 20 7 2.5823 4.1609 7.2179 21 8 1.8426 3.9074 8.1516 22 8 3.4440 5.0134 7.3375 23 6 3.2762 3.7211 4.8778 24 17 4.5035 4.9366 5.0508 25 6 3.1399 3.0425 3.6810 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.5817 1.6878 -2.0283 32 1 2.0956 3.1410 -1.1383 33 1 3.6749 3.5157 -4.4442 34 1 1.7585 0.4466 2.3357 35 1 0.5578 1.0203 4.5100 36 1 0.8018 2.2405 6.6328 37 1 3.7962 3.2684 2.8536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092604607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:55 Heat of formation + Delta-G solvation = 6.217208 kcal Electronic energy + Delta-G solvation = -25146.003998 eV Core-core repulsion = 21146.632927 eV Total energy + Delta-G solvation = -3999.371071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18308 -40.81973 -39.05924 -36.94674 -36.45254 -35.81246 -34.93280 -32.89592 -31.41984 -30.86897 -30.38527 -27.45243 -25.97403 -23.74947 -23.33225 -23.28353 -22.15323 -19.90150 -19.46514 -18.68986 -18.38397 -17.56099 -17.36958 -16.61272 -15.91759 -15.60494 -15.16170 -14.93245 -14.54077 -14.16943 -14.12293 -13.85007 -13.72609 -13.38333 -12.77173 -12.28934 -12.23499 -12.07360 -12.03381 -11.85947 -11.40814 -11.38174 -11.12731 -11.10662 -10.98911 -10.74907 -10.68951 -10.44594 -10.27242 -9.87090 -9.67947 -9.30623 -8.79511 -8.55944 -7.96293 -6.17641 -4.23522 -0.29795 0.61312 1.22566 1.27924 1.71226 2.62766 2.89683 3.23336 3.29123 3.31182 3.50386 3.98294 4.07597 4.34475 4.39253 4.51573 4.63591 4.97356 5.09552 5.17217 5.23153 5.31805 5.39793 5.47022 5.62723 5.73579 5.90484 5.97272 6.23347 6.27952 6.42356 6.46745 7.07731 7.22548 7.36133 7.65195 7.77652 8.05450 8.19412 8.71142 8.86044 9.42275 10.90326 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003366 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.288939 B = 8315.518891 C = 9753.764534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.598 5.598 4 C 0.260 3.740 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.695 3.305 14 O -0.559 6.559 15 N -0.690 5.690 16 C 0.252 3.748 17 C -0.157 4.157 18 C -0.020 4.020 19 C -0.077 4.077 20 N 0.036 4.964 21 O -0.178 6.178 22 O -0.146 6.146 23 C 0.040 3.960 24 Cl -0.005 7.005 25 C -0.122 4.122 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.266 0.734 34 H 0.411 0.589 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 -7.261 15.110 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.332 5.332 4 C 0.141 3.859 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.397 3.603 14 O -0.434 6.434 15 N -0.339 5.339 16 C 0.151 3.849 17 C -0.179 4.179 18 C -0.040 4.040 19 C -0.163 4.163 20 N 0.553 4.447 21 O -0.388 6.388 22 O -0.365 6.365 23 C 0.011 3.989 24 Cl 0.024 6.976 25 C -0.144 4.144 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.626 -6.588 14.136 16.579 hybrid contribution 0.914 -0.404 -0.149 1.010 sum -4.712 -6.993 13.987 16.332 Atomic orbital electron populations 1.22254 0.96309 1.01767 1.02696 1.21452 0.93830 0.83980 1.02762 1.47705 1.66014 1.13402 1.06054 1.19319 0.96529 0.93541 0.76507 1.21362 0.96808 1.32524 1.06547 0.92458 1.24917 0.97945 0.94730 0.96280 1.69905 1.35828 1.33006 1.14335 0.86547 0.84574 0.78284 0.77961 1.20225 1.21077 1.20109 1.15976 0.79475 0.84876 0.80022 1.90935 1.50811 1.16542 1.85158 1.43254 1.72513 1.14710 1.03401 1.17747 0.90593 0.91173 0.85390 1.20955 1.00771 1.04102 0.92110 1.20699 0.94031 0.90693 0.98541 1.20747 1.05753 1.04129 0.85659 1.43376 0.99400 0.99826 1.02058 1.94504 1.41859 1.71021 1.31402 1.94614 1.27573 1.25444 1.88866 1.20588 0.91982 0.93491 0.92883 1.98466 1.50571 1.51107 1.97437 1.21500 0.99399 0.97034 0.96428 0.91591 0.91805 0.93091 0.89035 0.92405 0.94484 0.93556 0.92471 0.75034 0.82891 0.82042 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.44 16 2 C 0.10 1.34 5.93 -4.04 -0.02 1.32 16 3 N -0.60 -10.93 2.46 -180.81 -0.44 -11.38 16 4 C 0.26 6.17 5.16 -5.20 -0.03 6.14 16 5 C -0.53 -14.06 9.39 -34.44 -0.32 -14.38 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.69 12.54 8.12 -86.92 -0.71 11.84 16 14 O -0.56 -12.49 13.36 5.29 0.07 -12.42 16 15 N -0.69 -8.65 5.22 -14.23 -0.07 -8.72 16 16 C 0.25 3.04 6.30 -83.69 -0.53 2.52 16 17 C -0.16 -1.37 9.97 -39.39 -0.39 -1.77 16 18 C -0.02 -0.19 9.55 -39.62 -0.38 -0.57 16 19 C -0.08 -0.98 6.86 -79.88 -0.55 -1.53 16 20 N 0.04 0.52 4.45 34.00 0.15 0.67 16 21 O -0.18 -2.50 18.44 -29.46 -0.54 -3.05 16 22 O -0.15 -2.25 16.01 -29.46 -0.47 -2.72 16 23 C 0.04 0.55 6.32 -39.52 -0.25 0.30 16 24 Cl -0.01 -0.08 25.93 -51.86 -1.34 -1.42 16 25 C -0.12 -1.74 8.48 -39.36 -0.33 -2.08 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.06 0.56 6.30 -51.93 -0.33 0.23 16 31 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.41 3.68 6.52 -40.82 -0.27 3.42 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.16 1.16 7.60 -52.48 -0.40 0.76 16 37 H 0.18 3.00 6.22 -52.49 -0.33 2.68 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -31.67 340.57 -8.81 -40.48 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.78 Total: 0.08 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -3.23 Total: 2.00 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.37 Total: -43.94 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.94 Total: -18.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.34 Total: -1.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.67 -8.81 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092604607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.700 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds