Wall clock time and date at job start Tue Mar 31 2020 16:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00169 * 2 1 4 4 S 1.65602 * 119.99746 * 179.97438 * 2 1 3 5 5 O 1.42099 * 106.40031 * 336.46269 * 4 2 1 6 6 O 1.42097 * 106.39849 * 203.54240 * 4 2 1 7 7 C 1.76202 * 107.21536 * 90.00131 * 4 2 1 8 8 C 1.38260 * 119.94230 * 90.00290 * 7 4 2 9 9 C 1.38149 * 120.05696 * 179.97438 * 8 7 4 10 10 C 1.38730 * 119.94076 * 359.97438 * 9 8 7 11 11 O 1.35922 * 120.05645 * 180.02562 * 10 9 8 12 12 C 1.34268 * 116.99720 * 77.08720 * 11 10 9 13 13 O 1.20828 * 120.00373 * 355.08299 * 12 11 10 14 14 C 1.50710 * 119.99827 * 175.08717 * 12 11 10 15 15 C 1.52993 * 109.46892 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46847 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99964 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00023 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46913 * 90.00302 * 20 18 16 22 22 H 1.48503 * 109.46974 * 210.00023 * 20 18 16 23 23 H 1.48495 * 109.47079 * 330.00457 * 20 18 16 24 24 C 1.38733 * 119.88905 * 0.27902 * 10 9 8 25 25 C 1.38144 * 119.94379 * 359.46551 * 24 10 9 26 26 H 1.08996 * 109.47268 * 270.00752 * 1 2 3 27 27 H 1.09003 * 109.47002 * 30.00204 * 1 2 3 28 28 H 1.08998 * 109.47322 * 150.00106 * 1 2 3 29 29 H 1.08995 * 109.47195 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46966 * 299.99883 * 3 2 1 31 31 H 1.09005 * 109.47284 * 59.99497 * 3 2 1 32 32 H 1.08002 * 119.97843 * 0.02562 * 8 7 4 33 33 H 1.07998 * 120.02902 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46936 * 299.99967 * 14 12 11 35 35 H 1.09004 * 109.46423 * 59.99949 * 14 12 11 36 36 H 1.09000 * 109.47523 * 299.99877 * 15 14 12 37 37 H 1.09007 * 109.47208 * 60.00084 * 15 14 12 38 38 H 0.97001 * 120.00135 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.02633 * 179.72651 * 24 10 9 40 40 H 1.08002 * 119.97468 * 180.23723 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.4112 -2.4063 0.5455 6 8 3.5758 -1.1566 0.5450 7 6 2.5537 -1.8866 -1.6822 8 6 3.6935 -1.4648 -2.3416 9 6 3.9006 -1.8185 -3.6608 10 6 2.9639 -2.5981 -4.3239 11 8 3.1656 -2.9479 -5.6218 12 6 4.0446 -3.9351 -5.8574 13 8 4.6805 -4.4084 -4.9455 14 6 4.2383 -4.4528 -7.2595 15 6 5.2877 -5.5661 -7.2516 16 6 5.4809 -6.0842 -8.6535 17 1 4.9124 -5.6613 -9.4686 18 6 6.3835 -7.0980 -8.8955 19 7 7.0755 -7.6132 -7.9028 20 14 6.6236 -7.7397 -10.6334 21 1 7.6956 -6.9617 -11.3046 22 1 7.0096 -9.1728 -10.5829 23 1 5.3564 -7.5947 -11.3939 24 6 1.8186 -3.0156 -3.6616 25 6 1.6188 -2.6636 -2.3408 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 3.2691 1.0695 0.0005 30 1 1.9342 1.8403 -0.8901 31 1 1.9342 1.8404 0.8900 32 1 4.4230 -0.8590 -1.8246 33 1 4.7908 -1.4885 -4.1755 34 1 3.2937 -4.8460 -7.6353 35 1 4.5756 -3.6405 -7.9033 36 1 6.2322 -5.1725 -6.8759 37 1 4.9508 -6.3785 -6.6076 38 1 7.7102 -8.3266 -8.0730 39 1 1.0859 -3.6189 -4.1770 40 1 0.7292 -2.9916 -1.8237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812970708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:23 Heat of formation + Delta-G solvation = -122.888198 kcal Electronic energy + Delta-G solvation = -24880.368285 eV Core-core repulsion = 20980.982833 eV Total energy + Delta-G solvation = -3899.385452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23790 -38.87032 -37.60651 -36.72635 -36.57268 -36.12732 -33.71847 -31.48320 -31.43685 -30.58533 -28.56668 -26.39118 -25.10471 -23.98780 -23.30994 -22.00942 -20.20415 -19.45826 -18.44786 -18.07881 -17.63868 -17.04420 -16.93072 -16.25736 -15.87560 -15.21457 -15.03742 -14.90378 -14.58584 -14.55249 -14.00758 -13.87037 -13.60266 -13.31542 -12.99321 -12.98782 -12.81322 -12.72541 -12.36831 -12.34464 -12.05821 -11.98545 -11.94184 -11.40184 -11.27442 -11.02957 -10.86826 -10.71949 -10.27154 -10.18534 -9.80849 -9.60280 -9.37640 -9.32454 -9.23317 -8.45559 -6.08952 -4.14848 -0.02773 0.40935 0.98607 2.45059 2.46008 2.81158 3.27000 3.31121 3.33916 3.36284 3.50176 3.93211 4.30853 4.37356 4.47627 4.49877 4.83645 4.86775 4.93070 4.97967 5.10328 5.11549 5.26618 5.31991 5.33723 5.43865 5.46916 5.57002 5.70011 5.72123 5.92285 5.99762 6.02257 6.04500 6.27818 6.60955 6.72457 7.55915 7.60059 7.88044 8.04762 8.24920 8.91746 9.49881 11.01925 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.002160 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.352778 B =12962.220620 C =13110.622133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.006 6.006 3 C 0.084 3.916 4 S 2.696 3.304 5 O -0.952 6.952 6 O -0.953 6.953 7 C -0.688 4.688 8 C -0.004 4.004 9 C -0.144 4.144 10 C 0.154 3.846 11 O -0.310 6.310 12 C 0.457 3.543 13 O -0.481 6.481 14 C -0.099 4.099 15 C 0.032 3.968 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.145 4.145 25 C -0.007 4.007 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.143 0.857 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 19.618 14.176 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.845 5.845 3 C -0.061 4.061 4 S 2.786 3.214 5 O -0.942 6.942 6 O -0.943 6.943 7 C -0.775 4.775 8 C -0.024 4.024 9 C -0.163 4.163 10 C 0.112 3.888 11 O -0.227 6.227 12 C 0.301 3.699 13 O -0.363 6.363 14 C -0.136 4.136 15 C -0.005 4.005 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.526 5.526 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.164 4.164 25 C -0.026 4.026 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.161 0.839 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.170 18.889 15.252 28.111 hybrid contribution 0.196 -0.301 -1.739 1.775 sum -13.974 18.588 13.514 26.896 Atomic orbital electron populations 1.21509 0.77843 1.03388 1.02564 1.57347 1.15496 1.21730 1.89920 1.21619 0.97105 0.84869 1.02523 1.01949 0.73188 0.72354 0.73861 1.93584 1.66050 1.58325 1.76278 1.93583 1.40028 1.84313 1.76362 1.30950 1.04686 1.14977 1.26856 1.20744 0.93918 0.94386 0.93335 1.21502 0.99749 0.99834 0.95246 1.18944 0.93785 0.92816 0.83215 1.84720 1.60867 1.52578 1.24584 1.25414 0.75021 0.75045 0.94414 1.90708 1.43906 1.55067 1.46652 1.21882 1.04289 1.01489 0.85943 1.19067 0.92384 0.91229 0.97820 1.21105 1.23408 1.19379 0.93036 0.92193 1.25029 0.95603 0.96399 0.97273 1.69988 1.25248 1.26294 1.31075 0.86512 0.78526 0.78144 0.84321 1.20548 1.21130 1.19759 1.21331 0.98673 1.01720 0.94647 1.20738 0.96929 0.91682 0.93275 0.92012 0.90703 0.90839 0.89482 0.91852 0.91456 0.83676 0.84247 0.88391 0.88416 0.95444 0.95450 0.92718 0.83944 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.33 59.85 0.62 1.09 16 2 N -1.01 -7.18 3.58 -129.20 -0.46 -7.65 16 3 C 0.08 0.44 10.67 59.85 0.64 1.08 16 4 S 2.70 28.31 5.64 -107.50 -0.61 27.70 16 5 O -0.95 -12.11 16.35 -57.17 -0.93 -13.04 16 6 O -0.95 -12.22 15.84 -57.17 -0.91 -13.13 16 7 C -0.69 -7.77 5.97 -39.56 -0.24 -8.01 16 8 C 0.00 -0.05 9.51 -39.61 -0.38 -0.43 16 9 C -0.14 -1.95 9.57 -39.43 -0.38 -2.33 16 10 C 0.15 2.29 5.13 -39.22 -0.20 2.08 16 11 O -0.31 -4.98 10.03 -23.62 -0.24 -5.22 16 12 C 0.46 8.65 7.83 36.01 0.28 8.93 16 13 O -0.48 -10.73 15.48 -18.75 -0.29 -11.02 16 14 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 15 C 0.03 0.82 4.26 -27.89 -0.12 0.70 16 16 C -0.53 -14.43 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.14 -1.82 9.99 -39.43 -0.39 -2.22 16 25 C -0.01 -0.08 9.51 -39.61 -0.38 -0.45 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 28 H 0.07 0.35 7.79 -51.93 -0.40 -0.05 16 29 H 0.09 0.49 6.91 -51.93 -0.36 0.13 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.15 1.36 7.61 -52.49 -0.40 0.96 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.15 1.25 7.61 -52.49 -0.40 0.85 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -35.88 361.25 -8.71 -44.60 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.32 Total: -3.10 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.11 Total: -14.79 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.27 Total: -33.48 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -2.37 Total: -42.41 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 28.31 SS G_CDS: -0.61 Total: 27.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.88 -8.71 -44.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812970708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.289 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds