Wall clock time and date at job start Tue Mar 31 2020 15:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99875 * 2 1 4 4 C 1.52999 * 109.46927 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47348 * 65.00316 * 4 3 2 6 6 C 1.36938 * 119.99773 * 269.99622 * 5 4 3 7 7 H 1.08002 * 119.99471 * 143.33133 * 6 5 4 8 8 C 1.38810 * 120.00416 * 323.33904 * 6 5 4 9 9 N 1.31614 * 119.99671 * 338.55718 * 8 6 5 10 10 Si 1.86803 * 120.00075 * 158.55109 * 8 6 5 11 11 H 1.48498 * 109.46930 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46761 * 119.99951 * 10 8 6 13 13 H 1.48502 * 109.47011 * 240.00014 * 10 8 6 14 14 C 1.46501 * 119.99976 * 89.99980 * 5 4 3 15 15 C 1.50695 * 109.47128 * 90.40474 * 14 5 4 16 16 C 1.38261 * 119.93923 * 269.40018 * 15 14 5 17 17 C 1.38286 * 120.09719 * 180.02562 * 16 15 14 18 18 Cl 1.73601 * 119.97431 * 179.97438 * 17 16 15 19 19 C 1.38797 * 120.04847 * 359.95898 * 17 16 15 20 20 C 1.38931 * 119.81766 * 359.94349 * 19 17 16 21 21 C 1.38185 * 119.94193 * 89.38039 * 15 14 5 22 22 O 1.36108 * 120.78274 * 180.16758 * 20 19 17 23 23 C 1.43175 * 116.70934 * 342.69192 * 22 20 19 24 24 C 1.53467 * 108.24453 * 46.23500 * 23 22 20 25 25 O 1.36138 * 119.39403 * 179.68113 * 19 17 16 26 26 H 1.08998 * 109.47807 * 59.99337 * 1 2 3 27 27 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09012 * 109.47161 * 299.99334 * 1 2 3 29 29 H 1.09004 * 109.47161 * 60.00329 * 3 2 1 30 30 H 1.08996 * 109.47686 * 300.00622 * 3 2 1 31 31 H 1.09000 * 109.46968 * 304.99733 * 4 3 2 32 32 H 1.09009 * 109.47018 * 185.00418 * 4 3 2 33 33 H 0.97003 * 119.99575 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47092 * 330.39915 * 14 5 4 35 35 H 1.08998 * 109.46645 * 210.40401 * 14 5 4 36 36 H 1.08003 * 119.94769 * 0.04315 * 16 15 14 37 37 H 1.08000 * 119.95510 * 359.97438 * 21 15 14 38 38 H 1.09004 * 109.70909 * 165.91343 * 23 22 20 39 39 H 1.08996 * 109.71461 * 286.54349 * 23 22 20 40 40 H 1.08997 * 109.71594 * 180.59519 * 24 23 22 41 41 H 1.08999 * 109.73360 * 59.98690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8353 -1.3067 -2.2524 8 6 4.5554 -1.5218 -0.2455 9 7 5.2585 -0.9241 0.6929 10 14 4.1747 -3.3455 -0.1087 11 1 3.3754 -3.7738 -1.2847 12 1 5.4445 -4.1144 -0.0672 13 1 3.4022 -3.5980 1.1341 14 6 4.2863 1.4008 -2.4147 15 6 5.7464 1.7730 -2.3897 16 6 6.1525 2.9309 -1.7527 17 6 7.4914 3.2759 -1.7282 18 17 7.9977 4.7309 -0.9279 19 6 8.4308 2.4595 -2.3427 20 6 8.0221 1.2951 -2.9809 21 6 6.6770 0.9562 -3.0032 22 8 8.9269 0.4786 -3.5868 23 6 10.2131 1.0406 -3.8692 24 6 10.6955 1.7886 -2.6190 25 8 9.7446 2.8153 -2.3161 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8513 0.5682 0.8410 32 1 3.9785 2.1765 0.0890 33 1 5.5793 -1.4307 1.4554 34 1 3.6799 2.3060 -2.3834 35 1 4.0677 0.8485 -3.3286 36 1 5.4229 3.5668 -1.2732 37 1 6.3569 0.0519 -3.4995 38 1 10.9160 0.2446 -4.1153 39 1 10.1354 1.7348 -4.7058 40 1 11.6706 2.2359 -2.8115 41 1 10.7679 1.0958 -1.7806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453594271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:23 Heat of formation + Delta-G solvation = -69.729225 kcal Electronic energy + Delta-G solvation = -26353.312915 eV Core-core repulsion = 22454.188902 eV Total energy + Delta-G solvation = -3899.124012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.90847 -37.93948 -37.11118 -36.98798 -36.00398 -34.99637 -31.83122 -30.80926 -30.21134 -28.97091 -28.03716 -25.68567 -25.61111 -24.18410 -22.89802 -22.23558 -20.66339 -19.86867 -18.27900 -17.14613 -17.02080 -16.49782 -15.69588 -15.27992 -15.06150 -14.94742 -14.65856 -14.38531 -14.16377 -14.02804 -13.95409 -13.76072 -13.53988 -13.21834 -12.88930 -12.23873 -11.82337 -11.75516 -11.62607 -11.30837 -11.05725 -10.91862 -10.82234 -10.76290 -10.71057 -10.44882 -10.33398 -10.21569 -10.07326 -9.90205 -9.72574 -8.82685 -8.42995 -7.94886 -7.62211 -6.59026 -5.73213 -3.26471 1.65342 1.74663 2.50750 3.27861 3.42443 3.44754 3.52101 3.54859 4.09434 4.38088 4.57816 4.69106 4.87786 4.95403 5.05746 5.27829 5.38955 5.44878 5.51230 5.58873 5.75016 5.80959 5.83774 5.85379 5.91076 6.07319 6.14627 6.28055 6.36148 6.39710 6.49062 6.51129 6.68404 6.75309 7.03260 7.11862 7.24798 7.66557 7.70664 7.87552 8.07256 8.56038 9.19654 9.83515 10.37571 11.27649 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.004415 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.873340 B = 6341.102383 C = 7573.637605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.048 3.952 4 C 0.141 3.859 5 N -0.562 5.562 6 C -0.240 4.240 7 H 0.061 0.939 8 C 0.022 3.978 9 N -0.883 5.883 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.177 3.823 15 C -0.055 4.055 16 C -0.104 4.104 17 C -0.027 4.027 18 Cl -0.073 7.073 19 C 0.032 3.968 20 C 0.060 3.940 21 C -0.084 4.084 22 O -0.304 6.304 23 C 0.021 3.979 24 C 0.021 3.979 25 O -0.302 6.302 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.105 0.895 32 H 0.041 0.959 33 H 0.253 0.747 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 7.803 -6.293 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.031 4.031 4 C 0.015 3.985 5 N -0.280 5.280 6 C -0.370 4.370 7 H 0.078 0.922 8 C -0.179 4.179 9 N -0.524 5.524 10 Si 0.728 3.272 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.215 1.215 14 C 0.051 3.949 15 C -0.060 4.060 16 C -0.123 4.123 17 C -0.054 4.054 18 Cl -0.045 7.045 19 C -0.013 4.013 20 C 0.016 3.984 21 C -0.104 4.104 22 O -0.218 6.218 23 C -0.055 4.055 24 C -0.055 4.055 25 O -0.217 6.217 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.438 7.661 -6.074 10.737 hybrid contribution 0.059 -0.665 0.424 0.791 sum 4.497 6.996 -5.650 10.054 Atomic orbital electron populations 1.22631 0.84273 1.01463 0.98400 1.88219 1.16518 1.27662 1.94818 1.23375 0.98636 0.84159 0.96929 1.21069 0.87565 0.96900 0.92994 1.43931 1.73171 1.02536 1.08379 1.18930 1.37068 0.81089 0.99896 0.92162 1.25071 0.96232 0.97711 0.98886 1.69973 1.34600 1.35712 1.12164 0.86309 0.77384 0.85598 0.77875 1.20140 1.22181 1.21479 1.20121 0.87012 0.94631 0.93173 1.20867 0.99810 0.91338 0.93969 1.20651 0.92338 0.98164 1.01188 1.19982 0.92798 0.90878 1.01759 1.98317 1.91726 1.35709 1.78712 1.18258 0.83761 0.96537 1.02778 1.18738 0.90300 0.91514 0.97889 1.20372 0.88091 1.00563 1.01396 1.86355 1.22335 1.37658 1.75480 1.23552 0.84804 0.99890 0.97227 1.23562 0.92537 0.91504 0.97872 1.86320 1.12461 1.35958 1.86964 0.95261 0.90764 0.95579 0.95632 0.95357 0.87717 0.94052 0.93721 0.93293 0.92305 0.85122 0.84637 0.86559 0.90878 0.86568 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.61 10.18 -35.23 -0.36 -7.97 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.14 3.15 5.72 -4.04 -0.02 3.13 16 5 N -0.56 -13.07 2.40 -174.61 -0.42 -13.48 16 6 C -0.24 -6.28 8.97 -15.06 -0.14 -6.41 16 7 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 8 C 0.02 0.59 4.96 -17.43 -0.09 0.50 16 9 N -0.88 -25.06 11.41 55.49 0.63 -24.43 16 10 Si 0.90 22.03 29.60 -169.99 -5.03 17.00 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.18 3.45 5.79 -5.20 -0.03 3.42 16 15 C -0.06 -1.08 5.46 -104.64 -0.57 -1.65 16 16 C -0.10 -1.90 9.47 -39.56 -0.37 -2.28 16 17 C -0.03 -0.49 6.33 -39.36 -0.25 -0.74 16 18 Cl -0.07 -1.20 28.46 -51.86 -1.48 -2.68 16 19 C 0.03 0.60 6.49 -39.12 -0.25 0.34 16 20 C 0.06 1.14 6.49 -39.14 -0.25 0.89 16 21 C -0.08 -1.67 9.62 -39.42 -0.38 -2.05 16 22 O -0.30 -5.17 10.42 -32.88 -0.34 -5.51 16 23 C 0.02 0.25 7.26 37.40 0.27 0.52 16 24 C 0.02 0.26 7.26 37.40 0.27 0.53 16 25 O -0.30 -4.94 9.84 -32.98 -0.32 -5.26 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 2.75 5.45 -51.93 -0.28 2.47 16 32 H 0.04 0.85 8.07 -51.92 -0.42 0.43 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.05 0.84 8.01 -51.93 -0.42 0.42 16 35 H 0.06 1.11 7.99 -51.93 -0.41 0.70 16 36 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.14 2.68 8.06 -52.49 -0.42 2.25 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -31.07 359.87 -8.10 -39.17 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.73 Total: -1.23 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.47 Total: -1.03 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.21 Total: -37.91 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.03 Total: -18.74 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.48 Total: -2.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.07 -8.10 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453594271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.556 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds