Wall clock time and date at job start Tue Mar 31 2020 15:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38218 * 120.01199 * 2 1 4 4 C 1.38220 * 120.02253 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.05408 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.02397 * 359.78769 * 5 4 3 7 7 S 1.76201 * 120.01081 * 180.23165 * 6 5 4 8 8 O 1.42100 * 106.40180 * 228.77271 * 7 6 5 9 9 O 1.42097 * 106.40278 * 1.69370 * 7 6 5 10 10 N 1.65607 * 107.21563 * 115.23290 * 7 6 5 11 11 C 1.46499 * 119.99771 * 64.99868 * 10 7 6 12 12 H 1.09002 * 109.41600 * 25.14318 * 11 10 7 13 13 C 1.52965 * 109.41100 * 144.99551 * 11 10 7 14 14 C 1.53236 * 109.40181 * 183.70253 * 13 11 10 15 15 C 1.51263 * 108.53533 * 305.37429 * 14 13 11 16 16 C 1.37882 * 120.85019 * 231.36586 * 15 14 13 17 17 N 1.31513 * 119.99912 * 349.13024 * 16 15 14 18 18 Si 1.86793 * 120.00168 * 169.12452 * 16 15 14 19 19 H 1.48500 * 109.47222 * 354.66337 * 18 16 15 20 20 H 1.48505 * 109.47191 * 114.66187 * 18 16 15 21 21 H 1.48500 * 109.47502 * 234.66300 * 18 16 15 22 22 C 1.51267 * 118.30300 * 51.35438 * 15 14 13 23 23 C 1.52950 * 109.41619 * 265.35067 * 11 10 7 24 24 C 1.38431 * 120.00919 * 179.97438 * 2 1 3 25 25 F 1.35099 * 120.03087 * 359.97438 * 24 2 1 26 26 H 1.09007 * 109.47345 * 270.02327 * 1 2 3 27 27 H 1.09003 * 109.47185 * 30.02222 * 1 2 3 28 28 H 1.08998 * 109.47124 * 150.02871 * 1 2 3 29 29 H 1.07997 * 119.98519 * 359.97438 * 3 2 1 30 30 H 1.08006 * 119.97311 * 179.97438 * 4 3 2 31 31 H 1.07995 * 119.99049 * 180.02562 * 5 4 3 32 32 H 0.96999 * 119.99945 * 244.99548 * 10 7 6 33 33 H 1.08994 * 109.48670 * 303.68361 * 13 11 10 34 34 H 1.09001 * 109.47807 * 63.71608 * 13 11 10 35 35 H 1.08998 * 109.62355 * 65.09088 * 14 13 11 36 36 H 1.09005 * 109.62002 * 185.66309 * 14 13 11 37 37 H 0.96997 * 120.00216 * 179.97438 * 17 16 15 38 38 H 1.08992 * 109.63012 * 68.35835 * 22 15 14 39 39 H 1.09000 * 109.62699 * 188.74272 * 22 15 14 40 40 H 1.09000 * 109.48515 * 296.28148 * 23 11 10 41 41 H 1.09001 * 109.48508 * 56.31355 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2732 0.0005 0.0016 6 6 3.5842 -1.1973 0.0066 7 16 4.4673 -2.7220 0.0141 8 8 3.8916 -3.5241 -1.0079 9 8 5.8474 -2.3861 0.0538 10 7 4.1284 -3.4776 1.4483 11 6 2.7634 -3.9253 1.7356 12 1 2.2335 -4.0967 0.7986 13 6 2.8136 -5.2275 2.5367 14 6 1.3881 -5.7445 2.7576 15 6 0.5729 -4.6461 3.4036 16 6 -0.1571 -4.8874 4.5482 17 7 -0.3263 -6.1206 4.9724 18 14 -0.9055 -3.4625 5.4963 19 1 -0.4655 -2.1798 4.8911 20 1 -2.3867 -3.5541 5.4399 21 1 -0.4594 -3.5209 6.9115 22 6 0.5793 -3.2763 2.7620 23 6 2.0341 -2.8488 2.5409 24 6 2.1994 -1.1987 0.0005 25 9 1.5247 -2.3692 0.0016 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6583 2.1321 -0.0004 30 1 4.1200 2.1328 0.0001 31 1 5.3532 0.0019 0.0024 32 1 4.8337 -3.6237 2.0980 33 1 3.3888 -5.9714 1.9857 34 1 3.2870 -5.0429 3.5010 35 1 0.9441 -6.0147 1.7995 36 1 1.4121 -6.6158 3.4121 37 1 -0.8396 -6.2903 5.7778 38 1 0.0606 -3.3180 1.8044 39 1 0.0806 -2.5625 3.4177 40 1 2.5258 -2.7205 3.5052 41 1 2.0570 -1.9068 1.9930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200846621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:51 Heat of formation + Delta-G solvation = -98.904353 kcal Electronic energy + Delta-G solvation = -27555.334644 eV Core-core repulsion = 23669.362000 eV Total energy + Delta-G solvation = -3885.972645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.24483 -39.28136 -37.57761 -36.97205 -35.74081 -33.72199 -33.17831 -31.30145 -31.01885 -29.66098 -27.23659 -26.90047 -23.65940 -22.22761 -22.03375 -21.49853 -19.72941 -19.21495 -18.20101 -17.52985 -16.94576 -16.60497 -16.20867 -16.03290 -15.45745 -15.03179 -14.52589 -14.43966 -13.93182 -13.64933 -13.55126 -13.23890 -12.86442 -12.71327 -12.50574 -12.40050 -12.31000 -12.26485 -12.16846 -11.97655 -11.88269 -11.67139 -11.56589 -11.08291 -10.91230 -10.79575 -10.63279 -10.20859 -9.98865 -9.64626 -9.50001 -9.24581 -8.99920 -8.79128 -8.49158 -8.38108 -6.13775 -4.02136 0.38705 0.63697 0.93667 3.00340 3.22233 3.27418 3.31208 3.32957 3.74353 3.94652 4.28785 4.35135 4.51092 4.71025 4.85553 4.95936 5.12202 5.18200 5.42610 5.44353 5.51765 5.64664 5.75955 5.78224 5.88928 5.94675 5.97244 6.05764 6.07897 6.43543 6.52746 6.57695 6.72636 6.79989 6.98321 7.05824 7.12946 7.31575 7.43816 7.62510 7.74729 7.81310 8.36555 8.94190 9.52109 10.95809 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.005612 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.922073 B = 4988.483432 C = 6226.616722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C -0.043 4.043 4 C -0.152 4.152 5 C -0.003 4.003 6 C -0.711 4.711 7 S 2.694 3.306 8 O -0.950 6.950 9 O -0.968 6.968 10 N -1.107 6.107 11 C 0.148 3.852 12 H 0.094 0.906 13 C -0.109 4.109 14 C 0.012 3.988 15 C -0.487 4.487 16 C 0.077 3.923 17 N -0.885 5.885 18 Si 0.876 3.124 19 H -0.257 1.257 20 H -0.283 1.283 21 H -0.286 1.286 22 C -0.021 4.021 23 C -0.124 4.124 24 C 0.206 3.794 25 F -0.106 7.106 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.415 0.585 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.009 0.991 36 H 0.058 0.942 37 H 0.263 0.737 38 H 0.022 0.978 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 14.413 -8.219 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.140 4.140 3 C -0.061 4.061 4 C -0.171 4.171 5 C -0.022 4.022 6 C -0.797 4.797 7 S 2.781 3.219 8 O -0.940 6.940 9 O -0.958 6.958 10 N -0.868 5.868 11 C 0.043 3.957 12 H 0.111 0.889 13 C -0.149 4.149 14 C -0.026 4.026 15 C -0.506 4.506 16 C -0.126 4.126 17 N -0.522 5.522 18 Si 0.705 3.295 19 H -0.182 1.182 20 H -0.209 1.209 21 H -0.213 1.213 22 C -0.059 4.059 23 C -0.164 4.164 24 C 0.185 3.815 25 F -0.084 7.084 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.323 13.978 -8.889 17.731 hybrid contribution -0.653 1.102 1.310 1.832 sum 5.669 15.081 -7.579 17.805 Atomic orbital electron populations 1.20795 0.89247 1.03669 1.03671 1.20083 0.97709 0.91810 1.04349 1.21219 0.94309 0.97194 0.93381 1.21278 0.94322 0.98413 1.03116 1.20821 1.00598 0.90149 0.90627 1.31135 1.04292 1.22779 1.21484 1.01909 0.72986 0.73309 0.73718 1.93618 1.79112 1.65950 1.55276 1.93546 1.30712 1.84696 1.86835 1.55654 1.19099 1.73944 1.38097 1.21211 0.78108 0.96055 1.00295 0.88862 1.21916 1.01352 0.93699 0.97937 1.19365 0.89232 0.97294 0.96721 1.20015 1.27729 0.93753 1.09090 1.24833 0.95435 0.95380 0.96910 1.69894 1.39818 1.18851 1.23654 0.86790 0.79051 0.84040 0.79661 1.18178 1.20933 1.21280 1.19916 0.91326 0.96863 0.97817 1.22221 1.00025 0.95225 0.98898 1.16852 0.88198 0.82120 0.94309 1.91664 1.79926 1.44467 1.92314 0.90046 0.90885 0.90487 0.84429 0.84519 0.83258 0.75015 0.94127 0.92650 0.97257 0.92381 0.92660 0.95946 0.94106 0.92555 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.84 36.01 0.35 -0.91 16 2 C -0.14 -1.73 5.89 -104.56 -0.62 -2.34 16 3 C -0.04 -0.42 9.70 -39.60 -0.38 -0.81 16 4 C -0.15 -1.47 10.04 -39.58 -0.40 -1.87 16 5 C 0.00 -0.03 9.55 -39.59 -0.38 -0.41 16 6 C -0.71 -10.37 5.65 -39.51 -0.22 -10.59 16 7 S 2.69 43.17 5.46 -107.50 -0.59 42.58 16 8 O -0.95 -18.12 16.77 -57.17 -0.96 -19.08 16 9 O -0.97 -15.92 16.97 -57.17 -0.97 -16.89 16 10 N -1.11 -17.63 5.47 -4.93 -0.03 -17.65 16 11 C 0.15 2.81 1.93 -67.97 -0.13 2.68 16 12 H 0.09 1.88 5.58 -51.93 -0.29 1.59 16 13 C -0.11 -2.24 5.46 -26.63 -0.15 -2.38 16 14 C 0.01 0.29 5.93 -27.49 -0.16 0.13 16 15 C -0.49 -12.39 5.48 -98.92 -0.54 -12.93 16 16 C 0.08 2.05 5.44 -17.82 -0.10 1.96 16 17 N -0.88 -24.91 12.82 55.43 0.71 -24.20 16 18 Si 0.88 20.19 27.95 -169.99 -4.75 15.43 16 19 H -0.26 -5.60 5.58 56.52 0.32 -5.28 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.02 -0.47 5.58 -27.49 -0.15 -0.63 16 23 C -0.12 -2.42 4.58 -26.64 -0.12 -2.55 16 24 C 0.21 3.13 4.69 -39.42 -0.18 2.95 16 25 F -0.11 -1.84 10.30 2.25 0.02 -1.82 16 26 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.15 1.52 7.33 -52.49 -0.38 1.13 16 32 H 0.42 5.61 8.83 -34.48 -0.30 5.31 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.06 1.54 7.19 -51.93 -0.37 1.16 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.02 0.49 7.56 -51.93 -0.39 0.10 16 39 H 0.04 0.91 4.35 -51.93 -0.23 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.51 4.41 -51.93 -0.23 0.28 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -31.54 331.39 -9.95 -41.49 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.20 Total: 2.83 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -3.18 Total: -27.69 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.68 Total: -41.86 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.93 Total: -35.97 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.02 Total: -1.82 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.75 Total: 15.43 kcal Atomic # 16 Polarization: 43.17 SS G_CDS: -0.59 Total: 42.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.54 -9.95 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200846621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.416 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds