Wall clock time and date at job start Tue Mar 31 2020 14:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.83874 * 2 1 4 4 C 1.52032 * 109.75447 * 239.40744 * 2 1 3 5 5 C 1.39122 * 123.59077 * 49.05059 * 4 2 1 6 6 C 1.32923 * 115.64785 * 179.53672 * 5 4 2 7 7 S 1.75716 * 109.59241 * 0.10295 * 6 5 4 8 8 C 1.34649 * 122.60149 * 228.92618 * 4 2 1 9 9 C 1.51396 * 125.09717 * 0.53057 * 8 4 2 10 10 C 1.53198 * 109.06608 * 341.76530 * 9 8 4 11 11 N 1.46972 * 109.79883 * 120.83760 * 2 1 3 12 12 C 1.34780 * 120.86721 * 344.65857 * 11 2 1 13 13 O 1.21548 * 119.99744 * 353.87242 * 12 11 2 14 14 C 1.47884 * 120.00103 * 173.87508 * 12 11 2 15 15 C 1.39922 * 120.02237 * 317.82130 * 14 12 11 16 16 C 1.38326 * 120.35359 * 180.02562 * 15 14 12 17 17 C 1.37749 * 120.41394 * 359.97438 * 16 15 14 18 18 C 1.40745 * 120.04406 * 0.02562 * 17 16 15 19 19 C 1.41440 * 120.18029 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99910 * 331.96373 * 19 18 17 21 21 C 1.39932 * 119.99834 * 151.69754 * 19 18 17 22 22 N 1.30829 * 120.00287 * 351.33426 * 21 19 18 23 23 Si 1.86804 * 119.99990 * 171.34046 * 21 19 18 24 24 H 1.48496 * 109.47079 * 89.99493 * 23 21 19 25 25 H 1.48493 * 109.47158 * 209.99644 * 23 21 19 26 26 H 1.48497 * 109.46952 * 329.99931 * 23 21 19 27 27 C 1.38994 * 120.02574 * 138.12509 * 14 12 11 28 28 H 1.08997 * 109.46932 * 310.29299 * 1 2 3 29 29 H 1.08998 * 109.46832 * 70.28571 * 1 2 3 30 30 H 1.08997 * 109.47080 * 190.28497 * 1 2 3 31 31 H 1.07997 * 122.17843 * 359.51221 * 5 4 2 32 32 H 1.08007 * 125.20662 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.54074 * 221.88737 * 9 8 4 34 34 H 1.09002 * 109.54131 * 101.63404 * 9 8 4 35 35 H 1.09007 * 109.61485 * 285.83475 * 10 9 8 36 36 H 1.08993 * 109.62070 * 165.28702 * 10 9 8 37 37 H 1.08001 * 119.82078 * 0.04050 * 15 14 12 38 38 H 1.08001 * 119.79141 * 180.02562 * 16 15 14 39 39 H 1.08010 * 119.97725 * 180.02562 * 17 16 15 40 40 H 0.97002 * 120.00085 * 179.97438 * 22 21 19 41 41 H 1.07998 * 120.20381 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0439 -0.7282 -1.2317 5 6 1.5892 -0.4741 -2.5217 6 6 2.1543 -1.1966 -3.4837 7 16 3.3408 -2.2865 -2.7823 8 6 2.9905 -1.6836 -1.1674 9 6 3.6544 -2.1671 0.1045 10 6 3.4375 -1.1274 1.2086 11 7 2.0279 -0.7089 1.1873 12 6 1.2124 -0.9733 2.2273 13 8 0.0811 -0.5289 2.2408 14 6 1.6940 -1.8039 3.3521 15 6 2.4510 -2.9533 3.0996 16 6 2.9045 -3.7355 4.1464 17 6 2.6168 -3.3922 5.4490 18 6 1.8566 -2.2398 5.7226 19 6 1.5591 -1.8849 7.0590 20 1 1.4916 -2.6497 7.8185 21 6 1.3576 -0.5423 7.3981 22 7 1.6091 0.3980 6.5239 23 14 0.7297 -0.0926 9.0990 24 1 1.8813 0.1067 10.0150 25 1 -0.0619 1.1612 9.0189 26 1 -0.1295 -1.1884 9.6151 27 6 1.3896 -1.4471 4.6605 28 1 -0.3633 0.6646 0.7838 29 1 -0.3633 0.3467 -0.9674 30 1 -0.3633 -1.0111 0.1835 31 1 0.8264 0.2621 -2.7281 32 1 1.9192 -1.1256 -4.5355 33 1 4.7225 -2.2975 -0.0687 34 1 3.2141 -3.1172 0.4071 35 1 4.0784 -0.2641 1.0293 36 1 3.6742 -1.5674 2.1772 37 1 2.6827 -3.2309 2.0819 38 1 3.4885 -4.6205 3.9411 39 1 2.9749 -4.0079 6.2610 40 1 1.4691 1.3287 6.7589 41 1 0.8017 -0.5633 4.8598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049623824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:39 Heat of formation + Delta-G solvation = 32.869296 kcal Electronic energy + Delta-G solvation = -25301.215531 eV Core-core repulsion = 21851.726245 eV Total energy + Delta-G solvation = -3449.489286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36323 -38.21646 -37.04899 -35.38429 -33.75871 -32.64009 -31.16852 -29.66738 -29.32600 -27.31957 -25.40511 -24.84553 -23.33601 -22.24228 -21.43513 -20.98797 -18.99951 -18.05877 -17.65363 -16.77338 -16.29208 -15.67123 -15.48308 -15.04661 -15.02213 -14.36909 -14.17310 -13.71379 -13.31315 -13.22710 -13.09995 -12.78821 -12.64748 -12.52448 -12.27393 -12.13944 -11.75351 -11.65163 -11.33938 -11.29619 -11.18891 -11.12031 -11.02160 -10.75860 -10.60182 -10.46814 -9.94450 -9.73087 -9.29140 -8.68563 -8.60466 -8.40431 -8.25177 -7.61763 -7.47617 -6.76753 -4.46759 0.94703 1.55692 1.92415 2.28390 2.62391 2.79023 3.06509 3.09327 3.12499 3.35071 3.64962 3.90877 4.57768 4.68212 4.72873 5.00544 5.13870 5.22275 5.30398 5.44955 5.48979 5.51787 5.62799 5.66915 5.81811 5.94013 5.98108 6.05953 6.11640 6.20077 6.33508 6.38309 6.45638 6.60339 6.68233 6.95432 6.96189 7.04152 7.20346 7.36419 7.64709 7.76414 7.85408 7.98372 8.14504 8.48247 8.79228 8.80172 8.85730 10.16297 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.003329 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.967112 B = 8407.924822 C = 9222.200654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.210 3.790 3 H 0.079 0.921 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.220 4.220 7 S 0.082 5.918 8 C -0.161 4.161 9 C -0.068 4.068 10 C 0.105 3.895 11 N -0.612 5.612 12 C 0.576 3.424 13 O -0.538 6.538 14 C -0.125 4.125 15 C -0.219 4.219 16 C -0.100 4.100 17 C -0.208 4.208 18 C 0.101 3.899 19 C -0.458 4.458 20 H 0.080 0.920 21 C 0.071 3.929 22 N -0.799 5.799 23 Si 0.914 3.086 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.093 4.093 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.282 0.718 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -0.769 -14.928 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.104 3.896 3 H 0.097 0.903 4 C -0.132 4.132 5 C -0.147 4.147 6 C -0.355 4.355 7 S 0.348 5.652 8 C -0.278 4.278 9 C -0.108 4.108 10 C -0.020 4.020 11 N -0.346 5.346 12 C 0.368 3.632 13 O -0.416 6.416 14 C -0.128 4.128 15 C -0.239 4.239 16 C -0.118 4.118 17 C -0.228 4.228 18 C 0.098 3.902 19 C -0.488 4.488 20 H 0.098 0.902 21 C -0.146 4.146 22 N -0.425 5.425 23 Si 0.738 3.262 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.114 4.114 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.546 -1.358 -15.575 16.282 hybrid contribution -1.012 1.252 0.976 1.883 sum 3.534 -0.106 -14.599 15.021 Atomic orbital electron populations 1.22138 0.91899 1.04293 1.00978 1.19903 0.95529 0.93638 0.80543 0.90321 1.19896 0.98421 0.99321 0.95524 1.19919 1.01849 1.01793 0.91132 1.25276 1.03811 1.03257 1.03119 1.84095 1.40768 1.41343 0.98989 1.24742 1.03122 1.02220 0.97758 1.20813 1.00015 1.00029 0.89947 1.21998 0.81921 0.97201 1.00852 1.48031 1.10871 1.58699 1.16993 1.18879 0.84265 0.78778 0.81259 1.90696 1.19722 1.52461 1.78720 1.19475 1.03275 0.97047 0.92982 1.20563 1.07506 0.98503 0.97344 1.20450 1.00119 0.98052 0.93214 1.21158 1.04869 1.01764 0.94992 1.17592 0.88756 0.90483 0.93341 1.19587 1.42162 0.92722 0.94354 0.90233 1.25922 0.92850 0.96337 0.99455 1.69737 1.35663 1.01671 1.35431 0.86214 0.79554 0.78819 0.81589 1.19487 1.20061 1.18497 1.21623 0.99289 1.01428 0.89016 0.89347 0.93669 0.91968 0.84307 0.81962 0.89529 0.89305 0.91336 0.86146 0.88394 0.88855 0.88617 0.90699 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.59 37.16 0.28 -1.86 16 2 C 0.21 3.20 3.73 -68.16 -0.25 2.95 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.12 -1.62 5.39 -104.90 -0.57 -2.19 16 5 C -0.12 -1.35 9.37 -41.09 -0.39 -1.73 16 6 C -0.22 -2.28 11.20 28.89 0.32 -1.96 16 7 S 0.08 0.91 23.31 -107.50 -2.51 -1.60 16 8 C -0.16 -2.12 6.39 -35.24 -0.23 -2.34 16 9 C -0.07 -0.86 6.18 -27.44 -0.17 -1.03 16 10 C 0.10 1.55 5.53 -3.63 -0.02 1.53 16 11 N -0.61 -10.66 2.92 -166.83 -0.49 -11.15 16 12 C 0.58 12.38 6.99 -12.31 -0.09 12.29 16 13 O -0.54 -12.70 12.98 5.32 0.07 -12.63 16 14 C -0.12 -2.85 5.08 -105.04 -0.53 -3.38 16 15 C -0.22 -4.46 7.40 -38.92 -0.29 -4.75 16 16 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 17 C -0.21 -4.78 9.78 -38.81 -0.38 -5.16 16 18 C 0.10 2.59 5.56 -106.87 -0.59 2.00 16 19 C -0.46 -11.82 9.07 -37.73 -0.34 -12.16 16 20 H 0.08 1.96 7.86 -52.49 -0.41 1.54 16 21 C 0.07 1.77 5.29 -17.34 -0.09 1.68 16 22 N -0.80 -20.51 10.72 55.55 0.60 -19.91 16 23 Si 0.91 18.57 29.57 -169.99 -5.03 13.55 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 26 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 27 C -0.09 -2.41 8.26 -38.44 -0.32 -2.73 16 28 H 0.09 1.57 6.48 -51.93 -0.34 1.23 16 29 H 0.04 0.58 6.96 -51.93 -0.36 0.21 16 30 H 0.06 1.12 7.22 -51.93 -0.38 0.75 16 31 H 0.14 1.37 7.34 -52.49 -0.39 0.98 16 32 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.17 6.27 -51.93 -0.33 0.84 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.96 4.76 -51.93 -0.25 1.71 16 37 H 0.10 1.73 4.75 -52.49 -0.25 1.48 16 38 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 40 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 41 H 0.13 3.71 6.12 -52.49 -0.32 3.39 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -28.15 338.32 -10.99 -39.13 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.69 Total: 8.83 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -4.04 Total: -21.31 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.11 Total: -31.07 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.15 -10.99 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049623824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.002 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds