Wall clock time and date at job start Tue Mar 31 2020 14:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.83874 * 2 1 4 4 C 1.52032 * 109.75447 * 239.40744 * 2 1 3 5 5 C 1.39122 * 123.59077 * 49.05059 * 4 2 1 6 6 C 1.32923 * 115.64785 * 179.53672 * 5 4 2 7 7 S 1.75716 * 109.59241 * 0.10295 * 6 5 4 8 8 C 1.34649 * 122.60149 * 228.92618 * 4 2 1 9 9 C 1.51396 * 125.09717 * 0.53057 * 8 4 2 10 10 C 1.53198 * 109.06608 * 341.76530 * 9 8 4 11 11 N 1.46972 * 109.79883 * 120.83760 * 2 1 3 12 12 C 1.34780 * 120.86721 * 344.65857 * 11 2 1 13 13 O 1.21548 * 119.99744 * 353.87242 * 12 11 2 14 14 C 1.47884 * 120.00103 * 173.87508 * 12 11 2 15 15 C 1.39922 * 120.02237 * 317.82130 * 14 12 11 16 16 C 1.38326 * 120.35359 * 180.02562 * 15 14 12 17 17 C 1.37749 * 120.41394 * 359.97438 * 16 15 14 18 18 C 1.40745 * 120.04406 * 0.02562 * 17 16 15 19 19 C 1.41440 * 120.18029 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99910 * 331.96373 * 19 18 17 21 21 C 1.39932 * 119.99834 * 151.69754 * 19 18 17 22 22 N 1.30829 * 120.00287 * 351.33426 * 21 19 18 23 23 Si 1.86804 * 119.99990 * 171.34046 * 21 19 18 24 24 H 1.48496 * 109.47079 * 89.99493 * 23 21 19 25 25 H 1.48493 * 109.47158 * 209.99644 * 23 21 19 26 26 H 1.48497 * 109.46952 * 329.99931 * 23 21 19 27 27 C 1.38994 * 120.02574 * 138.12509 * 14 12 11 28 28 H 1.08997 * 109.46932 * 310.29299 * 1 2 3 29 29 H 1.08998 * 109.46832 * 70.28571 * 1 2 3 30 30 H 1.08997 * 109.47080 * 190.28497 * 1 2 3 31 31 H 1.07997 * 122.17843 * 359.51221 * 5 4 2 32 32 H 1.08007 * 125.20662 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.54074 * 221.88737 * 9 8 4 34 34 H 1.09002 * 109.54131 * 101.63404 * 9 8 4 35 35 H 1.09007 * 109.61485 * 285.83475 * 10 9 8 36 36 H 1.08993 * 109.62070 * 165.28702 * 10 9 8 37 37 H 1.08001 * 119.82078 * 0.04050 * 15 14 12 38 38 H 1.08001 * 119.79141 * 180.02562 * 16 15 14 39 39 H 1.08010 * 119.97725 * 180.02562 * 17 16 15 40 40 H 0.97002 * 120.00085 * 179.97438 * 22 21 19 41 41 H 1.07998 * 120.20381 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0439 -0.7282 -1.2317 5 6 1.5892 -0.4741 -2.5217 6 6 2.1543 -1.1966 -3.4837 7 16 3.3408 -2.2865 -2.7823 8 6 2.9905 -1.6836 -1.1674 9 6 3.6544 -2.1671 0.1045 10 6 3.4375 -1.1274 1.2086 11 7 2.0279 -0.7089 1.1873 12 6 1.2124 -0.9733 2.2273 13 8 0.0811 -0.5289 2.2408 14 6 1.6940 -1.8039 3.3521 15 6 2.4510 -2.9533 3.0996 16 6 2.9045 -3.7355 4.1464 17 6 2.6168 -3.3922 5.4490 18 6 1.8566 -2.2398 5.7226 19 6 1.5591 -1.8849 7.0590 20 1 1.4916 -2.6497 7.8185 21 6 1.3576 -0.5423 7.3981 22 7 1.6091 0.3980 6.5239 23 14 0.7297 -0.0926 9.0990 24 1 1.8813 0.1067 10.0150 25 1 -0.0619 1.1612 9.0189 26 1 -0.1295 -1.1884 9.6151 27 6 1.3896 -1.4471 4.6605 28 1 -0.3633 0.6646 0.7838 29 1 -0.3633 0.3467 -0.9674 30 1 -0.3633 -1.0111 0.1835 31 1 0.8264 0.2621 -2.7281 32 1 1.9192 -1.1256 -4.5355 33 1 4.7225 -2.2975 -0.0687 34 1 3.2141 -3.1172 0.4071 35 1 4.0784 -0.2641 1.0293 36 1 3.6742 -1.5674 2.1772 37 1 2.6827 -3.2309 2.0819 38 1 3.4885 -4.6205 3.9411 39 1 2.9749 -4.0079 6.2610 40 1 1.4691 1.3287 6.7589 41 1 0.8017 -0.5633 4.8598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049623824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:38 Heat of formation + Delta-G solvation = 19.404387 kcal Electronic energy + Delta-G solvation = -25301.799413 eV Core-core repulsion = 21851.726245 eV Total energy + Delta-G solvation = -3450.073168 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76633 -39.57869 -38.71358 -36.65627 -35.53845 -33.89179 -32.56837 -31.41785 -30.90554 -28.45222 -27.24798 -26.08140 -24.67314 -23.42122 -22.83917 -22.70541 -20.51600 -19.29895 -19.05277 -18.03674 -17.77983 -17.08565 -16.97158 -16.66283 -16.29019 -15.85746 -15.50613 -15.21253 -14.71634 -14.56232 -14.41836 -14.16716 -14.09572 -13.90337 -13.63205 -13.40364 -13.26785 -12.91545 -12.85536 -12.78626 -12.57535 -12.44627 -12.32518 -12.19406 -12.05972 -11.83859 -11.63876 -11.49433 -11.09941 -10.28646 -9.76192 -9.47630 -9.40254 -9.30938 -9.23283 -8.59687 -6.39929 0.05094 0.49857 0.68554 1.01888 1.05732 1.37520 1.46822 1.51842 1.69538 1.88996 2.01924 2.20462 2.76270 3.58433 3.65485 3.67909 3.84525 4.02971 4.15676 4.21583 4.28189 4.35693 4.44463 4.47385 4.54056 4.71201 4.75496 4.81235 4.90600 4.94445 5.01930 5.11317 5.15513 5.19720 5.24988 5.33274 5.39738 5.50296 5.53185 5.68913 5.86758 5.96987 6.06755 6.28433 6.37531 6.62346 6.90595 6.95209 7.22222 8.34905 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.003329 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.967112 B = 8407.924822 C = 9222.200654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 H 0.087 0.913 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.210 4.210 7 S 0.117 5.883 8 C -0.184 4.184 9 C -0.062 4.062 10 C 0.099 3.901 11 N -0.605 5.605 12 C 0.568 3.432 13 O -0.573 6.573 14 C -0.132 4.132 15 C -0.198 4.198 16 C -0.095 4.095 17 C -0.213 4.213 18 C 0.070 3.930 19 C -0.496 4.496 20 H 0.081 0.919 21 C 0.028 3.972 22 N -0.835 5.835 23 Si 0.984 3.016 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.258 1.258 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.154 0.846 32 H 0.192 0.808 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.284 0.716 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.803 -2.043 -17.446 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.345 4.345 7 S 0.382 5.618 8 C -0.301 4.301 9 C -0.101 4.101 10 C -0.024 4.024 11 N -0.337 5.337 12 C 0.359 3.641 13 O -0.454 6.454 14 C -0.135 4.135 15 C -0.217 4.217 16 C -0.113 4.113 17 C -0.233 4.233 18 C 0.068 3.932 19 C -0.526 4.526 20 H 0.099 0.901 21 C -0.185 4.185 22 N -0.462 5.462 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.171 0.829 32 H 0.209 0.791 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.212 -2.650 -18.130 19.347 hybrid contribution -1.429 1.566 1.514 2.606 sum 4.783 -1.084 -16.616 17.324 Atomic orbital electron populations 1.21952 0.92621 1.01981 1.01691 1.20018 0.95056 0.94276 0.80661 0.89504 1.19811 0.99227 0.99979 0.95350 1.20031 1.02849 1.02936 0.90431 1.25686 1.02599 1.01876 1.04355 1.83998 1.40294 1.40632 0.96826 1.24889 1.03371 1.02603 0.99280 1.20756 1.01849 0.98569 0.88938 1.22158 0.80384 0.98732 1.01160 1.48048 1.11490 1.57698 1.16453 1.18812 0.84329 0.78927 0.82016 1.90686 1.21280 1.53775 1.79617 1.19736 1.03116 0.98126 0.92507 1.20953 1.04942 0.96678 0.99138 1.20896 0.99424 0.99044 0.91923 1.21433 1.04209 1.00845 0.96820 1.17918 0.89917 0.91864 0.93530 1.19856 1.44377 0.93577 0.94794 0.90091 1.26782 0.92542 0.95903 1.03307 1.69848 1.37027 1.01957 1.37391 0.85165 0.79145 0.78382 0.76814 1.18300 1.19779 1.18137 1.21390 1.01160 1.01485 0.90741 0.92129 0.90404 0.94625 0.82871 0.79057 0.86588 0.89685 0.89706 0.87735 0.85090 0.84411 0.87342 0.90535 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 7.59 71.98 0.55 -3.47 16 2 C 0.20 6.15 3.73 44.58 0.17 6.32 16 3 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 4 C -0.13 -3.28 5.39 -20.05 -0.11 -3.39 16 5 C -0.13 -2.68 9.37 21.31 0.20 -2.48 16 6 C -0.21 -3.54 11.20 66.65 0.75 -2.79 16 7 S 0.12 2.12 23.31 -56.49 -1.32 0.80 16 8 C -0.18 -4.30 6.39 25.08 0.16 -4.14 16 9 C -0.06 -1.37 6.18 30.14 0.19 -1.18 16 10 C 0.10 2.78 5.53 86.34 0.48 3.26 16 11 N -0.60 -21.06 2.92 -800.02 -2.34 -23.40 16 12 C 0.57 25.32 6.99 86.80 0.61 25.93 16 13 O -0.57 -28.75 12.98 -3.87 -0.05 -28.80 16 14 C -0.13 -6.20 5.08 -20.13 -0.10 -6.30 16 15 C -0.20 -7.79 7.40 22.70 0.17 -7.62 16 16 C -0.09 -3.69 10.01 22.17 0.22 -3.47 16 17 C -0.21 -9.79 9.78 22.77 0.22 -9.57 16 18 C 0.07 3.75 5.56 -21.32 -0.12 3.63 16 19 C -0.50 -26.82 9.07 23.47 0.21 -26.61 16 20 H 0.08 4.15 7.86 -2.91 -0.02 4.13 16 21 C 0.03 1.44 5.29 85.25 0.45 1.89 16 22 N -0.84 -45.56 10.72 21.82 0.23 -45.32 16 23 Si 0.98 39.47 29.57 68.60 2.03 41.50 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 27 C -0.13 -6.97 8.26 23.01 0.19 -6.78 16 28 H 0.06 2.27 6.48 -2.39 -0.02 2.25 16 29 H 0.08 1.92 6.96 -2.39 -0.02 1.90 16 30 H 0.03 1.31 7.22 -2.39 -0.02 1.29 16 31 H 0.15 2.56 7.34 -2.91 -0.02 2.53 16 32 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.96 6.27 -2.39 -0.01 1.94 16 35 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.10 3.27 4.76 -2.39 -0.01 3.26 16 37 H 0.13 4.26 4.75 -2.91 -0.01 4.25 16 38 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.28 14.28 8.30 -92.71 -0.77 13.51 16 41 H 0.10 5.98 6.12 -2.91 -0.02 5.97 16 Total: -1.00 -66.12 338.32 3.86 -62.26 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 1.07 Total: 29.74 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 4.23 Total: -36.78 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -2.10 Total: -68.72 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.80 kcal Total: -66.12 3.86 -62.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049623824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.665 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds