Wall clock time and date at job start Tue Mar 31 2020 14:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.84299 * 2 1 4 4 C 1.52439 * 109.80381 * 120.84479 * 2 1 3 5 5 C 1.39127 * 123.57161 * 287.98787 * 4 2 1 6 6 C 1.32919 * 115.65491 * 179.72681 * 5 4 2 7 7 S 1.75717 * 109.58706 * 0.06357 * 6 5 4 8 8 C 1.34647 * 122.62437 * 107.93881 * 4 2 1 9 9 C 1.51395 * 125.09985 * 0.53414 * 8 4 2 10 10 C 1.53680 * 109.04699 * 341.80025 * 9 8 4 11 11 N 1.46975 * 109.79849 * 239.16798 * 2 1 3 12 12 C 1.34783 * 120.87686 * 105.50273 * 11 2 1 13 13 O 1.21541 * 120.00105 * 184.84663 * 12 11 2 14 14 C 1.47887 * 119.99280 * 4.84790 * 12 11 2 15 15 C 1.39925 * 120.02034 * 142.18209 * 14 12 11 16 16 C 1.38333 * 120.35313 * 180.27902 * 15 14 12 17 17 C 1.37754 * 120.41692 * 359.71627 * 16 15 14 18 18 C 1.40753 * 120.03464 * 0.02562 * 17 16 15 19 19 C 1.41439 * 120.17402 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99871 * 152.48065 * 19 18 17 21 21 C 1.39934 * 120.00074 * 332.47337 * 19 18 17 22 22 N 1.30827 * 119.99965 * 162.41796 * 21 19 18 23 23 Si 1.86806 * 120.00067 * 342.41942 * 21 19 18 24 24 H 1.48503 * 109.46970 * 92.28002 * 23 21 19 25 25 H 1.48495 * 109.46940 * 212.27863 * 23 21 19 26 26 H 1.48499 * 109.46785 * 332.28275 * 23 21 19 27 27 C 1.38995 * 120.02921 * 321.89700 * 14 12 11 28 28 H 1.09001 * 109.47404 * 180.83265 * 1 2 3 29 29 H 1.08997 * 109.47224 * 300.83291 * 1 2 3 30 30 H 1.09005 * 109.46904 * 60.83177 * 1 2 3 31 31 H 1.08000 * 122.16923 * 359.69949 * 5 4 2 32 32 H 1.07994 * 125.20720 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.54102 * 101.79189 * 9 8 4 34 34 H 1.09003 * 109.53569 * 221.95702 * 9 8 4 35 35 H 1.08992 * 109.74968 * 286.05315 * 10 9 8 36 36 H 1.09008 * 109.75434 * 165.33501 * 10 9 8 37 37 H 1.07994 * 119.82225 * 0.02562 * 15 14 12 38 38 H 1.08004 * 119.79322 * 179.70360 * 16 15 14 39 39 H 1.07998 * 119.98425 * 179.97438 * 17 16 15 40 40 H 0.97000 * 119.99785 * 179.97438 * 22 21 19 41 41 H 1.08000 * 120.20004 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0464 -0.7354 1.2314 5 6 1.9703 -0.2221 2.5223 6 6 2.4644 -0.9993 3.4807 7 16 3.0811 -2.4854 2.7745 8 6 2.6210 -1.9511 1.1630 9 6 2.8429 -2.7387 -0.1108 10 6 1.9321 -2.1761 -1.2134 11 7 2.0278 -0.7088 -1.1874 12 6 2.5530 -0.0315 -2.2277 13 8 2.8787 -0.6249 -3.2371 14 6 2.7329 1.4339 -2.1406 15 6 3.8627 2.0353 -2.7061 16 6 4.0408 3.4046 -2.6237 17 6 3.1057 4.1926 -1.9895 18 6 1.9602 3.6060 -1.4195 19 6 0.9979 4.4124 -0.7681 20 1 -0.0336 4.0951 -0.7266 21 6 1.3823 5.6212 -0.1773 22 7 0.4801 6.5221 0.1158 23 14 3.1839 5.9486 0.1929 24 1 3.8049 6.6551 -0.9562 25 1 3.2937 6.7917 1.4104 26 1 3.8849 4.6591 0.4188 27 6 1.7770 2.2153 -1.5023 28 1 -0.3634 -1.0275 0.0149 29 1 -0.3633 0.5267 0.8824 30 1 -0.3633 0.5009 -0.8974 31 1 1.5382 0.7453 2.7319 32 1 2.4844 -0.7545 4.5323 33 1 3.8854 -2.6512 -0.4166 34 1 2.6005 -3.7873 0.0621 35 1 0.9013 -2.4790 -1.0298 36 1 2.2579 -2.5470 -2.1853 37 1 4.6017 1.4266 -3.2059 38 1 4.9186 3.8588 -3.0592 39 1 3.2519 5.2609 -1.9289 40 1 0.7466 7.3599 0.5257 41 1 0.9013 1.7559 -1.0682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049623826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:41 Heat of formation + Delta-G solvation = 30.772802 kcal Electronic energy + Delta-G solvation = -25642.004985 eV Core-core repulsion = 22192.424788 eV Total energy + Delta-G solvation = -3449.580197 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42592 -38.32562 -37.34785 -35.37173 -33.76320 -33.06595 -30.74688 -30.41444 -29.98380 -27.66703 -25.29847 -24.76182 -23.15830 -22.93233 -21.68862 -20.77988 -19.36981 -17.99112 -17.79571 -16.76062 -16.25200 -16.01287 -15.84190 -15.18659 -14.84107 -14.59661 -14.22304 -13.78929 -13.71779 -13.39039 -13.14359 -13.05673 -12.72327 -12.54917 -12.48315 -12.08746 -11.85315 -11.78995 -11.73892 -11.60531 -11.26768 -11.22808 -10.96114 -10.82617 -10.63075 -10.46566 -9.97931 -9.74330 -9.46123 -9.14113 -8.59064 -8.50824 -8.30165 -7.83651 -7.79615 -7.07212 -4.62456 1.00757 1.61031 1.96238 1.98955 2.46772 2.71961 3.01670 3.12755 3.16707 3.20630 3.43829 3.86567 4.38303 4.62622 4.72418 4.97132 5.04330 5.16496 5.24351 5.26061 5.31073 5.44532 5.57441 5.69410 5.78513 5.85126 5.87976 5.92972 5.97977 6.11687 6.13290 6.28017 6.32881 6.33964 6.54801 6.56146 6.64955 6.75487 6.92782 7.16534 7.36627 7.45641 7.67002 7.74286 7.85809 8.20012 8.45208 8.58099 8.65344 9.94604 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.004808 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.070330 B = 5822.405379 C = 6952.923118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.175 3.825 3 H 0.142 0.858 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.214 4.214 7 S 0.075 5.925 8 C -0.171 4.171 9 C -0.062 4.062 10 C 0.116 3.884 11 N -0.607 5.607 12 C 0.572 3.428 13 O -0.549 6.549 14 C -0.097 4.097 15 C -0.190 4.190 16 C -0.081 4.081 17 C -0.224 4.224 18 C 0.087 3.913 19 C -0.443 4.443 20 H 0.093 0.907 21 C 0.085 3.915 22 N -0.803 5.803 23 Si 0.911 3.089 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.244 1.244 27 C -0.196 4.196 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.287 0.713 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -13.038 6.366 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.069 3.931 3 H 0.158 0.842 4 C -0.120 4.120 5 C -0.146 4.146 6 C -0.349 4.349 7 S 0.341 5.659 8 C -0.288 4.288 9 C -0.102 4.102 10 C -0.008 4.008 11 N -0.339 5.339 12 C 0.364 3.636 13 O -0.427 6.427 14 C -0.100 4.100 15 C -0.210 4.210 16 C -0.099 4.099 17 C -0.243 4.243 18 C 0.084 3.916 19 C -0.471 4.471 20 H 0.111 0.889 21 C -0.135 4.135 22 N -0.426 5.426 23 Si 0.738 3.262 24 H -0.195 1.195 25 H -0.219 1.219 26 H -0.168 1.168 27 C -0.216 4.216 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.893 -14.426 6.580 16.117 hybrid contribution 0.054 1.656 -0.082 1.659 sum 2.947 -12.769 6.498 14.627 Atomic orbital electron populations 1.22138 0.93837 1.02217 1.03389 1.20960 0.94143 0.98006 0.79970 0.84154 1.19902 1.02032 0.94508 0.95540 1.20017 1.01907 1.01575 0.91096 1.25281 1.08251 0.98153 1.03241 1.84018 1.62225 1.20622 0.99084 1.24625 1.07232 0.99326 0.97622 1.20731 1.01360 0.97981 0.90109 1.21605 0.99293 0.80453 0.99449 1.48039 1.61882 1.06264 1.17753 1.18842 0.75027 0.87998 0.81750 1.90678 1.51319 1.70596 1.30152 1.19395 0.98038 0.90388 1.02181 1.20343 0.98919 0.94309 1.07448 1.20564 0.97753 0.93348 0.98282 1.21258 0.98590 0.98495 1.05976 1.17646 0.91696 0.91428 0.90858 1.19475 0.96851 1.01148 1.29667 0.88897 1.26152 1.00224 0.94221 0.92892 1.69679 1.36803 1.05745 1.30375 0.86362 0.82402 0.80136 0.77325 1.19535 1.21854 1.16752 1.21611 1.00592 0.93640 1.05710 0.92461 0.90699 0.91007 0.83767 0.81851 0.89926 0.89730 0.90942 0.88206 0.87951 0.88118 0.87757 0.90268 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.62 37.16 0.32 -1.80 16 2 C 0.17 2.68 2.33 -67.96 -0.16 2.52 16 3 H 0.14 2.49 4.34 -51.93 -0.23 2.27 16 4 C -0.11 -1.52 5.16 -104.70 -0.54 -2.06 16 5 C -0.12 -1.50 9.99 -41.09 -0.41 -1.91 16 6 C -0.21 -2.45 11.20 28.89 0.32 -2.13 16 7 S 0.08 0.85 23.31 -107.50 -2.51 -1.65 16 8 C -0.17 -2.24 6.39 -35.24 -0.23 -2.47 16 9 C -0.06 -0.73 6.44 -27.19 -0.18 -0.90 16 10 C 0.12 1.54 6.31 -3.38 -0.02 1.51 16 11 N -0.61 -9.90 2.57 -166.30 -0.43 -10.32 16 12 C 0.57 11.36 7.39 -12.31 -0.09 11.27 16 13 O -0.55 -12.01 16.32 5.33 0.09 -11.93 16 14 C -0.10 -2.07 5.39 -105.03 -0.57 -2.63 16 15 C -0.19 -4.07 9.63 -38.92 -0.37 -4.44 16 16 C -0.08 -1.72 10.01 -39.72 -0.40 -2.12 16 17 C -0.22 -5.14 7.19 -38.81 -0.28 -5.42 16 18 C 0.09 2.05 5.17 -106.87 -0.55 1.49 16 19 C -0.44 -11.04 9.58 -37.73 -0.36 -11.40 16 20 H 0.09 2.40 8.06 -52.49 -0.42 1.97 16 21 C 0.08 2.08 5.42 -17.34 -0.09 1.98 16 22 N -0.80 -20.12 13.93 55.55 0.77 -19.35 16 23 Si 0.91 19.63 24.45 -169.99 -4.16 15.48 16 24 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 25 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.24 -5.37 6.90 56.52 0.39 -4.98 16 27 C -0.20 -4.21 7.11 -38.44 -0.27 -4.48 16 28 H 0.06 0.69 7.39 -51.93 -0.38 0.31 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.03 6.88 -51.93 -0.36 0.67 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.84 7.37 -51.93 -0.38 0.45 16 36 H 0.10 1.37 7.01 -51.92 -0.36 1.00 16 37 H 0.10 2.09 8.03 -52.49 -0.42 1.66 16 38 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.10 2.38 4.26 -52.49 -0.22 2.16 16 40 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 41 H 0.12 2.37 3.80 -52.49 -0.20 2.17 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -27.77 338.50 -9.70 -37.48 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -4.70 Total: 8.17 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -3.88 Total: -22.97 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.35 Total: -29.67 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.16 Total: 15.48 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.77 -9.70 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049623826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.248 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds