Wall clock time and date at job start Tue Mar 31 2020 14:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.84299 * 2 1 4 4 C 1.52439 * 109.80381 * 120.84479 * 2 1 3 5 5 C 1.39127 * 123.57161 * 287.98787 * 4 2 1 6 6 C 1.32919 * 115.65491 * 179.72681 * 5 4 2 7 7 S 1.75717 * 109.58706 * 0.06357 * 6 5 4 8 8 C 1.34647 * 122.62437 * 107.93881 * 4 2 1 9 9 C 1.51395 * 125.09985 * 0.53414 * 8 4 2 10 10 C 1.53680 * 109.04699 * 341.80025 * 9 8 4 11 11 N 1.46975 * 109.79849 * 239.16798 * 2 1 3 12 12 C 1.34783 * 120.87686 * 105.50273 * 11 2 1 13 13 O 1.21541 * 120.00105 * 184.84663 * 12 11 2 14 14 C 1.47887 * 119.99280 * 4.84790 * 12 11 2 15 15 C 1.39925 * 120.02034 * 142.18209 * 14 12 11 16 16 C 1.38333 * 120.35313 * 180.27902 * 15 14 12 17 17 C 1.37754 * 120.41692 * 359.71627 * 16 15 14 18 18 C 1.40753 * 120.03464 * 0.02562 * 17 16 15 19 19 C 1.41439 * 120.17402 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99871 * 152.48065 * 19 18 17 21 21 C 1.39934 * 120.00074 * 332.47337 * 19 18 17 22 22 N 1.30827 * 119.99965 * 162.41796 * 21 19 18 23 23 Si 1.86806 * 120.00067 * 342.41942 * 21 19 18 24 24 H 1.48503 * 109.46970 * 92.28002 * 23 21 19 25 25 H 1.48495 * 109.46940 * 212.27863 * 23 21 19 26 26 H 1.48499 * 109.46785 * 332.28275 * 23 21 19 27 27 C 1.38995 * 120.02921 * 321.89700 * 14 12 11 28 28 H 1.09001 * 109.47404 * 180.83265 * 1 2 3 29 29 H 1.08997 * 109.47224 * 300.83291 * 1 2 3 30 30 H 1.09005 * 109.46904 * 60.83177 * 1 2 3 31 31 H 1.08000 * 122.16923 * 359.69949 * 5 4 2 32 32 H 1.07994 * 125.20720 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.54102 * 101.79189 * 9 8 4 34 34 H 1.09003 * 109.53569 * 221.95702 * 9 8 4 35 35 H 1.08992 * 109.74968 * 286.05315 * 10 9 8 36 36 H 1.09008 * 109.75434 * 165.33501 * 10 9 8 37 37 H 1.07994 * 119.82225 * 0.02562 * 15 14 12 38 38 H 1.08004 * 119.79322 * 179.70360 * 16 15 14 39 39 H 1.07998 * 119.98425 * 179.97438 * 17 16 15 40 40 H 0.97000 * 119.99785 * 179.97438 * 22 21 19 41 41 H 1.08000 * 120.20004 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0464 -0.7354 1.2314 5 6 1.9703 -0.2221 2.5223 6 6 2.4644 -0.9993 3.4807 7 16 3.0811 -2.4854 2.7745 8 6 2.6210 -1.9511 1.1630 9 6 2.8429 -2.7387 -0.1108 10 6 1.9321 -2.1761 -1.2134 11 7 2.0278 -0.7088 -1.1874 12 6 2.5530 -0.0315 -2.2277 13 8 2.8787 -0.6249 -3.2371 14 6 2.7329 1.4339 -2.1406 15 6 3.8627 2.0353 -2.7061 16 6 4.0408 3.4046 -2.6237 17 6 3.1057 4.1926 -1.9895 18 6 1.9602 3.6060 -1.4195 19 6 0.9979 4.4124 -0.7681 20 1 -0.0336 4.0951 -0.7266 21 6 1.3823 5.6212 -0.1773 22 7 0.4801 6.5221 0.1158 23 14 3.1839 5.9486 0.1929 24 1 3.8049 6.6551 -0.9562 25 1 3.2937 6.7917 1.4104 26 1 3.8849 4.6591 0.4188 27 6 1.7770 2.2153 -1.5023 28 1 -0.3634 -1.0275 0.0149 29 1 -0.3633 0.5267 0.8824 30 1 -0.3633 0.5009 -0.8974 31 1 1.5382 0.7453 2.7319 32 1 2.4844 -0.7545 4.5323 33 1 3.8854 -2.6512 -0.4166 34 1 2.6005 -3.7873 0.0621 35 1 0.9013 -2.4790 -1.0298 36 1 2.2579 -2.5470 -2.1853 37 1 4.6017 1.4266 -3.2059 38 1 4.9186 3.8588 -3.0592 39 1 3.2519 5.2609 -1.9289 40 1 0.7466 7.3599 0.5257 41 1 0.9013 1.7559 -1.0682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049623826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:41 Heat of formation + Delta-G solvation = 17.403694 kcal Electronic energy + Delta-G solvation = -25642.584713 eV Core-core repulsion = 22192.424788 eV Total energy + Delta-G solvation = -3450.159925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78342 -39.67262 -38.96694 -36.57827 -35.56007 -34.23756 -32.47036 -31.71665 -31.52178 -28.75328 -27.11676 -25.96844 -24.45648 -24.11743 -23.03796 -22.44096 -20.80594 -19.42876 -18.96277 -18.16257 -17.77146 -17.38065 -17.12391 -16.70293 -16.29369 -15.96487 -15.73676 -15.15479 -14.97699 -14.73005 -14.56001 -14.14076 -14.13224 -13.98838 -13.78110 -13.69106 -13.32496 -13.08318 -12.83994 -12.81839 -12.71449 -12.56923 -12.41719 -12.20352 -12.06958 -11.72492 -11.58995 -11.49555 -11.18171 -10.79071 -9.87272 -9.61948 -9.56232 -9.45976 -9.21367 -8.91228 -6.51660 0.04328 0.26486 0.68135 0.72398 1.03863 1.27586 1.41033 1.47893 1.68760 1.76670 1.93020 2.11258 2.59583 3.41885 3.48033 3.63731 3.78498 3.97890 4.16993 4.17764 4.25668 4.30366 4.40417 4.41805 4.50229 4.54807 4.67688 4.74430 4.77879 4.84084 4.87882 4.92965 4.95149 5.10788 5.14533 5.24037 5.31930 5.40616 5.51808 5.55257 5.63720 5.74897 5.85488 6.07921 6.29190 6.31675 6.63866 6.78644 7.06509 8.15848 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.004808 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.070330 B = 5822.405379 C = 6952.923118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.174 3.826 3 H 0.113 0.887 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.210 4.210 7 S 0.117 5.883 8 C -0.185 4.185 9 C -0.057 4.057 10 C 0.111 3.889 11 N -0.598 5.598 12 C 0.569 3.431 13 O -0.575 6.575 14 C -0.109 4.109 15 C -0.190 4.190 16 C -0.081 4.081 17 C -0.237 4.237 18 C 0.071 3.929 19 C -0.469 4.469 20 H 0.067 0.933 21 C 0.055 3.945 22 N -0.839 5.839 23 Si 0.957 3.043 24 H -0.259 1.259 25 H -0.279 1.279 26 H -0.253 1.253 27 C -0.189 4.189 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.189 0.811 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.295 0.705 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -14.963 7.405 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.069 3.931 3 H 0.130 0.870 4 C -0.138 4.138 5 C -0.168 4.168 6 C -0.345 4.345 7 S 0.383 5.617 8 C -0.303 4.303 9 C -0.097 4.097 10 C -0.012 4.012 11 N -0.329 5.329 12 C 0.360 3.640 13 O -0.456 6.456 14 C -0.111 4.111 15 C -0.210 4.210 16 C -0.099 4.099 17 C -0.257 4.257 18 C 0.068 3.932 19 C -0.498 4.498 20 H 0.086 0.914 21 C -0.162 4.162 22 N -0.465 5.465 23 Si 0.782 3.218 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.176 1.176 27 C -0.208 4.208 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.206 0.794 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.240 -16.365 7.646 18.554 hybrid contribution -0.349 2.061 -0.397 2.127 sum 3.890 -14.305 7.249 16.502 Atomic orbital electron populations 1.22088 0.92600 1.03267 1.03050 1.20840 0.95067 0.96747 0.80430 0.87008 1.19824 1.03512 0.95182 0.95255 1.20077 1.03345 1.02193 0.91155 1.25647 1.06667 0.97904 1.04250 1.83885 1.61024 1.19678 0.97118 1.24873 1.06883 0.99237 0.99273 1.20744 1.00563 0.99472 0.88892 1.21869 1.01057 0.78216 1.00031 1.48071 1.60196 1.07739 1.16898 1.18623 0.75581 0.87465 0.82338 1.90658 1.52960 1.70796 1.31228 1.19688 0.97920 0.91728 1.01811 1.20664 0.98967 0.94750 1.06587 1.20880 0.98369 0.93171 0.97506 1.21395 0.98878 0.98867 1.06516 1.17798 0.92055 0.92184 0.91144 1.19435 0.96141 1.02439 1.31832 0.91439 1.26706 1.03199 0.93800 0.92448 1.69700 1.38279 1.06533 1.31942 0.85640 0.78592 0.79710 0.77876 1.18499 1.20542 1.17649 1.21779 1.01038 0.93053 1.04964 0.90665 0.89928 0.92403 0.83857 0.79400 0.90513 0.86525 0.88834 0.88690 0.86783 0.84859 0.87698 0.89448 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 8.62 71.98 0.62 -3.41 16 2 C 0.17 5.29 2.33 44.71 0.10 5.40 16 3 H 0.11 4.06 4.34 -2.39 -0.01 4.05 16 4 C -0.12 -3.37 5.16 -19.91 -0.10 -3.47 16 5 C -0.14 -3.39 9.99 21.31 0.21 -3.18 16 6 C -0.21 -4.26 11.20 66.65 0.75 -3.51 16 7 S 0.12 2.29 23.31 -56.49 -1.32 0.97 16 8 C -0.19 -4.42 6.39 25.08 0.16 -4.26 16 9 C -0.06 -1.19 6.44 30.30 0.20 -1.00 16 10 C 0.11 2.73 6.31 86.50 0.55 3.28 16 11 N -0.60 -19.05 2.57 -798.32 -2.05 -21.10 16 12 C 0.57 22.42 7.39 86.80 0.64 23.06 16 13 O -0.58 -24.94 16.32 -3.85 -0.06 -25.01 16 14 C -0.11 -4.61 5.39 -20.13 -0.11 -4.72 16 15 C -0.19 -7.92 9.63 22.70 0.22 -7.70 16 16 C -0.08 -3.32 10.01 22.18 0.22 -3.10 16 17 C -0.24 -10.81 7.19 22.77 0.16 -10.65 16 18 C 0.07 3.41 5.17 -21.32 -0.11 3.30 16 19 C -0.47 -24.33 9.58 23.47 0.22 -24.10 16 20 H 0.07 3.71 8.06 -2.91 -0.02 3.69 16 21 C 0.05 2.74 5.42 85.25 0.46 3.20 16 22 N -0.84 -43.20 13.93 21.82 0.30 -42.90 16 23 Si 0.96 40.34 24.45 68.60 1.68 42.02 16 24 H -0.26 -10.43 6.54 99.48 0.65 -9.78 16 25 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.25 -10.88 6.90 99.48 0.69 -10.20 16 27 C -0.19 -8.27 7.11 23.01 0.16 -8.11 16 28 H 0.07 1.70 7.39 -2.39 -0.02 1.69 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.68 6.88 -2.38 -0.02 1.66 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.92 7.37 -2.39 -0.02 1.90 16 36 H 0.09 2.46 7.01 -2.38 -0.02 2.45 16 37 H 0.11 4.48 8.03 -2.91 -0.02 4.45 16 38 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.11 4.72 4.26 -2.91 -0.01 4.71 16 40 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 41 H 0.13 5.40 3.80 -2.91 -0.01 5.39 16 Total: -1.00 -60.27 338.50 3.90 -56.37 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.00 Total: 28.64 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 4.36 Total: -38.99 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -1.75 Total: -64.00 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.68 Total: 42.02 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -60.27 3.90 -56.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049623826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.774 kcal (2) G-P(sol) polarization free energy of solvation -60.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds