Wall clock time and date at job start Tue Mar 31 2020 15:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00278 * 2 1 4 4 C 1.50700 * 109.47349 * 270.00190 * 3 2 1 5 5 C 1.38237 * 119.99937 * 269.73094 * 4 3 2 6 6 C 1.38235 * 119.99961 * 179.76653 * 5 4 3 7 7 C 1.38241 * 120.00038 * 0.47825 * 6 5 4 8 8 C 1.38233 * 119.99861 * 359.79197 * 7 6 5 9 9 C 1.38240 * 119.99936 * 89.99523 * 4 3 2 10 10 C 1.34784 * 119.99848 * 179.97438 * 2 1 3 11 11 O 1.21608 * 119.99951 * 174.73777 * 10 2 1 12 12 C 1.47426 * 119.99607 * 354.74376 * 10 2 1 13 13 C 1.39684 * 120.21706 * 309.16393 * 12 10 2 14 14 C 1.37806 * 119.93536 * 180.28060 * 13 12 10 15 15 C 1.38656 * 120.38444 * 359.73024 * 14 13 12 16 16 C 1.37908 * 120.43884 * 0.02562 * 15 14 13 17 17 C 1.39116 * 120.04781 * 359.97438 * 16 15 14 18 18 S 1.76204 * 120.18635 * 180.02562 * 17 16 15 19 19 C 1.76195 * 100.00073 * 8.24234 * 18 17 16 20 20 H 1.08002 * 120.00345 * 354.94066 * 19 18 17 21 21 C 1.38814 * 120.00125 * 174.94219 * 19 18 17 22 22 N 1.31558 * 119.99673 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47280 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47030 * 119.99912 * 23 21 19 26 26 H 1.48497 * 109.46827 * 239.99477 * 23 21 19 27 27 H 1.08995 * 109.47397 * 274.35398 * 1 2 3 28 28 H 1.09003 * 109.47277 * 34.35610 * 1 2 3 29 29 H 1.09002 * 109.47505 * 154.34821 * 1 2 3 30 30 H 1.09007 * 109.46880 * 29.99832 * 3 2 1 31 31 H 1.08996 * 109.47411 * 150.00059 * 3 2 1 32 32 H 1.08007 * 119.99856 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.99748 * 180.24837 * 6 5 4 34 34 H 1.07992 * 119.99835 * 179.76846 * 7 6 5 35 35 H 1.07994 * 119.99991 * 179.97438 * 8 7 6 36 36 H 1.07990 * 120.00237 * 0.02562 * 9 4 3 37 37 H 1.07994 * 120.02688 * 0.02562 * 13 12 10 38 38 H 1.08001 * 119.80498 * 179.74773 * 14 13 12 39 39 H 1.07997 * 119.77761 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.97857 * 180.02562 * 16 15 14 41 41 H 0.96997 * 119.99812 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6033 1.3093 -2.0706 6 6 3.8314 1.7044 -3.3755 7 6 2.9097 2.5022 -4.0273 8 6 1.7578 2.9013 -3.3756 9 6 1.5271 2.5019 -2.0724 10 6 2.1389 -1.1673 0.0005 11 8 3.3511 -1.1696 -0.0961 12 6 1.4063 -2.4412 0.1181 13 6 0.4725 -2.6234 1.1408 14 6 -0.2048 -3.8187 1.2487 15 6 0.0306 -4.8424 0.3436 16 6 0.9455 -4.6776 -0.6751 17 6 1.6394 -3.4785 -0.8010 18 16 2.8086 -3.2638 -2.1016 19 6 2.5036 -4.7286 -3.0321 20 1 1.8107 -5.4694 -2.6614 21 6 3.1539 -4.9304 -4.2418 22 7 3.9975 -4.0277 -4.6937 23 14 2.8300 -6.4830 -5.2286 24 1 1.8471 -7.3315 -4.5081 25 1 2.2863 -6.1180 -6.5615 26 1 4.0994 -7.2340 -5.4006 27 1 -0.3634 0.0780 1.0246 28 1 -0.3634 0.8484 -0.5800 29 1 -0.3634 -0.9264 -0.4449 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 4.3256 0.6896 -1.5598 33 1 4.7316 1.3928 -3.8845 34 1 3.0897 2.8139 -5.0455 35 1 1.0378 3.5248 -3.8847 36 1 0.6274 2.8139 -1.5633 37 1 0.2845 -1.8297 1.8486 38 1 -0.9234 -3.9587 2.0427 39 1 -0.5060 -5.7749 0.4371 40 1 1.1228 -5.4798 -1.3762 41 1 4.4517 -4.1686 -5.5391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050123833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:12 Heat of formation + Delta-G solvation = 22.875919 kcal Electronic energy + Delta-G solvation = -24878.451266 eV Core-core repulsion = 21428.528635 eV Total energy + Delta-G solvation = -3449.922631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95256 -38.76414 -37.46676 -35.25045 -32.78223 -31.98496 -30.64510 -30.39406 -30.23224 -27.13342 -25.92790 -25.70768 -22.84104 -22.31215 -22.00760 -21.14356 -19.37760 -17.90587 -16.91004 -16.67276 -16.11962 -15.86723 -15.39779 -15.17235 -14.77561 -14.62401 -14.33378 -14.01314 -13.48447 -13.17626 -13.06597 -12.95054 -12.78081 -12.62084 -12.35249 -12.22618 -12.01967 -11.72407 -11.64338 -11.23390 -11.18389 -11.03914 -10.97305 -10.73355 -10.33788 -9.80547 -9.62184 -9.47426 -8.75671 -8.66097 -8.60395 -8.51763 -8.32651 -8.29334 -6.57000 -6.50002 -4.20616 1.50690 1.64587 1.66701 1.99188 3.07507 3.09862 3.18427 3.20508 3.36273 3.43985 4.01238 4.11859 4.35171 4.85705 4.92201 4.97225 5.08989 5.14032 5.21117 5.28100 5.32665 5.41259 5.43479 5.56839 5.61463 5.68712 5.83700 5.85791 5.89867 5.92986 6.12278 6.20725 6.30350 6.35119 6.55877 6.65251 6.74093 6.78702 6.86560 6.88159 7.00222 7.11392 7.24760 7.42355 7.56546 7.69680 8.13871 8.65324 8.97022 10.55572 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005343 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.909093 B = 5239.002342 C = 7467.470539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.613 5.613 3 C 0.159 3.841 4 C -0.107 4.107 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.130 4.130 9 C -0.111 4.111 10 C 0.571 3.429 11 O -0.515 6.515 12 C -0.162 4.162 13 C -0.066 4.066 14 C -0.180 4.180 15 C -0.081 4.081 16 C -0.152 4.152 17 C -0.049 4.049 18 S 0.108 5.892 19 C -0.570 4.570 20 H 0.094 0.906 21 C 0.080 3.920 22 N -0.858 5.858 23 Si 0.922 3.078 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 10.837 7.226 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C 0.037 3.963 4 C -0.108 4.108 5 C -0.103 4.103 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.148 4.148 9 C -0.130 4.130 10 C 0.360 3.640 11 O -0.391 6.391 12 C -0.176 4.176 13 C -0.086 4.086 14 C -0.204 4.204 15 C -0.102 4.102 16 C -0.177 4.177 17 C -0.167 4.167 18 S 0.369 5.631 19 C -0.717 4.717 20 H 0.111 0.889 21 C -0.130 4.130 22 N -0.491 5.491 23 Si 0.748 3.252 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.000 11.777 6.515 14.736 hybrid contribution -1.259 -2.009 -0.517 2.427 sum -7.259 9.768 5.999 13.568 Atomic orbital electron populations 1.21814 0.79692 1.03562 1.01062 1.47774 1.06763 1.05151 1.75044 1.20272 0.98222 0.85030 0.92807 1.20218 0.95152 0.98296 0.97166 1.21273 0.97164 0.97121 0.94740 1.21216 0.99717 0.97619 0.94965 1.21134 0.94620 0.98376 0.99561 1.21026 0.97630 1.01078 0.95039 1.20944 0.98455 0.98519 0.95049 1.18358 0.87107 0.83286 0.75221 1.90764 1.13679 1.86833 1.47779 1.19132 1.03135 0.94147 1.01150 1.20899 0.94129 0.97249 0.96337 1.20658 1.03687 0.94505 1.01574 1.21075 0.96774 0.98029 0.94314 1.21414 0.98582 0.97728 1.00014 1.22902 0.99380 0.94493 0.99954 1.84102 1.35947 1.27709 1.15292 1.23632 1.31970 1.07544 1.08517 0.88854 1.25108 0.93820 0.97773 0.96342 1.69986 1.24875 1.33726 1.20531 0.86042 0.78643 0.81140 0.79396 1.19118 1.20234 1.20199 0.92938 0.91798 0.90202 0.90110 0.89227 0.85165 0.86055 0.86483 0.86540 0.86638 0.86788 0.86976 0.86977 0.84406 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 9.17 59.85 0.55 1.53 16 2 N -0.61 -9.39 2.86 -184.23 -0.53 -9.92 16 3 C 0.16 2.13 5.51 -5.20 -0.03 2.10 16 4 C -0.11 -1.58 5.46 -104.62 -0.57 -2.15 16 5 C -0.08 -1.41 9.57 -39.58 -0.38 -1.79 16 6 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 7 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 8 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 9 C -0.11 -1.43 9.70 -39.58 -0.38 -1.81 16 10 C 0.57 11.18 6.60 -12.52 -0.08 11.10 16 11 O -0.52 -11.70 14.69 5.27 0.08 -11.62 16 12 C -0.16 -3.20 4.62 -104.75 -0.48 -3.68 16 13 C -0.07 -1.06 8.00 -39.20 -0.31 -1.37 16 14 C -0.18 -2.74 10.02 -39.59 -0.40 -3.14 16 15 C -0.08 -1.36 10.03 -39.55 -0.40 -1.76 16 16 C -0.15 -3.16 9.25 -39.38 -0.36 -3.52 16 17 C -0.05 -1.11 6.13 -38.39 -0.24 -1.35 16 18 S 0.11 2.89 19.79 -107.50 -2.13 0.76 16 19 C -0.57 -15.63 9.08 30.95 0.28 -15.35 16 20 H 0.09 2.43 4.86 -52.49 -0.25 2.18 16 21 C 0.08 2.19 5.49 -17.46 -0.10 2.10 16 22 N -0.86 -24.57 13.22 55.49 0.73 -23.84 16 23 Si 0.92 20.62 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.05 0.50 7.61 -51.93 -0.40 0.10 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.08 1.10 6.33 -51.93 -0.33 0.77 16 30 H 0.08 0.80 8.02 -51.93 -0.42 0.39 16 31 H 0.09 1.27 7.44 -51.93 -0.39 0.89 16 32 H 0.13 2.38 7.40 -52.48 -0.39 1.99 16 33 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.11 1.50 7.13 -52.49 -0.37 1.12 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.14 2.99 4.99 -52.48 -0.26 2.73 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -32.14 358.72 -10.45 -42.59 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.90 Total: 6.43 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -4.09 Total: -25.41 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.21 Total: -33.75 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.13 Total: 0.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.14 -10.45 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050123833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.471 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds