Wall clock time and date at job start Tue Mar 31 2020 15:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00278 * 2 1 4 4 C 1.50700 * 109.47349 * 270.00190 * 3 2 1 5 5 C 1.38237 * 119.99937 * 269.73094 * 4 3 2 6 6 C 1.38235 * 119.99961 * 179.76653 * 5 4 3 7 7 C 1.38241 * 120.00038 * 0.47825 * 6 5 4 8 8 C 1.38233 * 119.99861 * 359.79197 * 7 6 5 9 9 C 1.38240 * 119.99936 * 89.99523 * 4 3 2 10 10 C 1.34784 * 119.99848 * 179.97438 * 2 1 3 11 11 O 1.21608 * 119.99951 * 174.73777 * 10 2 1 12 12 C 1.47426 * 119.99607 * 354.74376 * 10 2 1 13 13 C 1.39684 * 120.21706 * 309.16393 * 12 10 2 14 14 C 1.37806 * 119.93536 * 180.28060 * 13 12 10 15 15 C 1.38656 * 120.38444 * 359.73024 * 14 13 12 16 16 C 1.37908 * 120.43884 * 0.02562 * 15 14 13 17 17 C 1.39116 * 120.04781 * 359.97438 * 16 15 14 18 18 S 1.76204 * 120.18635 * 180.02562 * 17 16 15 19 19 C 1.76195 * 100.00073 * 8.24234 * 18 17 16 20 20 H 1.08002 * 120.00345 * 354.94066 * 19 18 17 21 21 C 1.38814 * 120.00125 * 174.94219 * 19 18 17 22 22 N 1.31558 * 119.99673 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47280 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47030 * 119.99912 * 23 21 19 26 26 H 1.48497 * 109.46827 * 239.99477 * 23 21 19 27 27 H 1.08995 * 109.47397 * 274.35398 * 1 2 3 28 28 H 1.09003 * 109.47277 * 34.35610 * 1 2 3 29 29 H 1.09002 * 109.47505 * 154.34821 * 1 2 3 30 30 H 1.09007 * 109.46880 * 29.99832 * 3 2 1 31 31 H 1.08996 * 109.47411 * 150.00059 * 3 2 1 32 32 H 1.08007 * 119.99856 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.99748 * 180.24837 * 6 5 4 34 34 H 1.07992 * 119.99835 * 179.76846 * 7 6 5 35 35 H 1.07994 * 119.99991 * 179.97438 * 8 7 6 36 36 H 1.07990 * 120.00237 * 0.02562 * 9 4 3 37 37 H 1.07994 * 120.02688 * 0.02562 * 13 12 10 38 38 H 1.08001 * 119.80498 * 179.74773 * 14 13 12 39 39 H 1.07997 * 119.77761 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.97857 * 180.02562 * 16 15 14 41 41 H 0.96997 * 119.99812 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6033 1.3093 -2.0706 6 6 3.8314 1.7044 -3.3755 7 6 2.9097 2.5022 -4.0273 8 6 1.7578 2.9013 -3.3756 9 6 1.5271 2.5019 -2.0724 10 6 2.1389 -1.1673 0.0005 11 8 3.3511 -1.1696 -0.0961 12 6 1.4063 -2.4412 0.1181 13 6 0.4725 -2.6234 1.1408 14 6 -0.2048 -3.8187 1.2487 15 6 0.0306 -4.8424 0.3436 16 6 0.9455 -4.6776 -0.6751 17 6 1.6394 -3.4785 -0.8010 18 16 2.8086 -3.2638 -2.1016 19 6 2.5036 -4.7286 -3.0321 20 1 1.8107 -5.4694 -2.6614 21 6 3.1539 -4.9304 -4.2418 22 7 3.9975 -4.0277 -4.6937 23 14 2.8300 -6.4830 -5.2286 24 1 1.8471 -7.3315 -4.5081 25 1 2.2863 -6.1180 -6.5615 26 1 4.0994 -7.2340 -5.4006 27 1 -0.3634 0.0780 1.0246 28 1 -0.3634 0.8484 -0.5800 29 1 -0.3634 -0.9264 -0.4449 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 4.3256 0.6896 -1.5598 33 1 4.7316 1.3928 -3.8845 34 1 3.0897 2.8139 -5.0455 35 1 1.0378 3.5248 -3.8847 36 1 0.6274 2.8139 -1.5633 37 1 0.2845 -1.8297 1.8486 38 1 -0.9234 -3.9587 2.0427 39 1 -0.5060 -5.7749 0.4371 40 1 1.1228 -5.4798 -1.3762 41 1 4.4517 -4.1686 -5.5391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050123833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:11 Heat of formation + Delta-G solvation = 4.814864 kcal Electronic energy + Delta-G solvation = -24879.234452 eV Core-core repulsion = 21428.528635 eV Total energy + Delta-G solvation = -3450.705817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29948 -39.97522 -38.90261 -36.57222 -34.80425 -33.20981 -31.87614 -31.75839 -31.60461 -28.18634 -27.89587 -27.00155 -24.21781 -23.50370 -23.40075 -22.34048 -20.85433 -19.64751 -18.33579 -17.85005 -17.60756 -17.20639 -17.05903 -16.58473 -16.07887 -15.87635 -15.69442 -15.42213 -14.96867 -14.63224 -14.49429 -14.28498 -14.09604 -13.68065 -13.63823 -13.43694 -13.37274 -13.18709 -13.01938 -12.85979 -12.77529 -12.60530 -12.11336 -12.05803 -11.83715 -11.49024 -11.42797 -11.07632 -10.42610 -10.34351 -9.80230 -9.77965 -9.73710 -9.54115 -8.52211 -8.49025 -6.28895 0.17709 0.38541 0.52677 0.52806 1.24167 1.33759 1.43868 1.60180 1.78240 2.13928 2.22181 2.82156 2.95027 2.98623 3.17634 3.67708 3.90053 3.96983 4.06217 4.16568 4.24960 4.28028 4.33408 4.36436 4.59031 4.61835 4.62838 4.67556 4.78827 4.81430 4.86148 4.98133 5.10295 5.12563 5.17047 5.35854 5.47822 5.52334 5.55824 5.64024 5.64794 5.67164 5.72560 6.07667 6.14473 6.15419 6.40043 6.91652 7.24555 8.57626 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005343 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.909093 B = 5239.002342 C = 7467.470539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.604 5.604 3 C 0.158 3.842 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.144 4.144 7 C -0.125 4.125 8 C -0.127 4.127 9 C -0.105 4.105 10 C 0.559 3.441 11 O -0.563 6.563 12 C -0.164 4.164 13 C -0.059 4.059 14 C -0.148 4.148 15 C -0.076 4.076 16 C -0.171 4.171 17 C -0.070 4.070 18 S -0.004 6.004 19 C -0.576 4.576 20 H 0.098 0.902 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.997 3.003 24 H -0.255 1.255 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 11.565 9.636 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C 0.037 3.963 4 C -0.118 4.118 5 C -0.135 4.135 6 C -0.162 4.162 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.123 4.123 10 C 0.348 3.652 11 O -0.442 6.442 12 C -0.176 4.176 13 C -0.079 4.079 14 C -0.171 4.171 15 C -0.096 4.096 16 C -0.196 4.196 17 C -0.187 4.187 18 S 0.252 5.748 19 C -0.723 4.723 20 H 0.116 0.884 21 C -0.184 4.184 22 N -0.539 5.539 23 Si 0.818 3.182 24 H -0.179 1.179 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.184 0.816 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.113 12.529 9.008 19.017 hybrid contribution 0.089 -2.124 -0.984 2.342 sum -11.024 10.406 8.025 17.152 Atomic orbital electron populations 1.22120 0.77106 1.03738 1.03854 1.47829 1.08334 1.04369 1.73072 1.20468 0.98349 0.85159 0.92357 1.20405 0.94705 0.98741 0.97922 1.21198 0.98316 0.98361 0.95610 1.21323 1.00631 0.99170 0.95068 1.21438 0.94669 0.97685 1.00569 1.21505 0.97371 1.00441 0.95163 1.21372 0.98888 0.96919 0.95108 1.18572 0.86708 0.84650 0.75249 1.90752 1.15831 1.87585 1.50031 1.19477 1.03418 0.93612 1.01131 1.21386 0.92281 0.98994 0.95202 1.21323 1.02235 0.92622 1.00872 1.21500 0.95201 1.00206 0.92741 1.21427 1.00077 0.96618 1.01458 1.22762 0.99707 0.96633 0.99593 1.84280 1.41274 1.29810 1.19443 1.23864 1.32109 1.07408 1.08901 0.88397 1.26190 0.93472 1.01317 0.97440 1.70147 1.26525 1.36112 1.21155 0.84927 0.78795 0.76738 0.77717 1.17853 1.19419 1.19625 0.88987 0.89271 0.92144 0.85134 0.91208 0.88779 0.87005 0.84415 0.82916 0.82554 0.82592 0.81589 0.83274 0.86448 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 9.17 127.77 1.17 2.63 16 2 N -0.60 -17.62 2.86 -855.03 -2.44 -20.07 16 3 C 0.16 4.07 5.51 85.63 0.47 4.54 16 4 C -0.12 -3.44 5.46 -19.86 -0.11 -3.55 16 5 C -0.12 -4.29 9.57 22.27 0.21 -4.08 16 6 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 7 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 8 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 9 C -0.10 -2.41 9.70 22.27 0.22 -2.19 16 10 C 0.56 22.43 6.60 86.66 0.57 23.00 16 11 O -0.56 -27.73 14.69 -4.06 -0.06 -27.79 16 12 C -0.16 -6.43 4.62 -19.95 -0.09 -6.52 16 13 C -0.06 -1.63 8.00 22.52 0.18 -1.45 16 14 C -0.15 -3.63 10.02 22.27 0.22 -3.41 16 15 C -0.08 -2.29 10.03 22.29 0.22 -2.07 16 16 C -0.17 -7.12 9.25 22.40 0.21 -6.92 16 17 C -0.07 -3.32 6.13 23.04 0.14 -3.17 16 18 S 0.00 -0.22 19.79 -56.49 -1.12 -1.34 16 19 C -0.58 -33.76 9.08 67.96 0.62 -33.15 16 20 H 0.10 5.41 4.86 -2.91 -0.01 5.39 16 21 C 0.02 1.23 5.49 84.87 0.47 1.70 16 22 N -0.90 -55.61 13.22 21.65 0.29 -55.32 16 23 Si 1.00 44.04 29.55 68.60 2.03 46.06 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H 0.09 1.15 7.61 -2.39 -0.02 1.13 16 28 H 0.09 1.35 8.10 -2.39 -0.02 1.34 16 29 H 0.06 1.47 6.33 -2.39 -0.02 1.45 16 30 H 0.13 2.04 8.02 -2.38 -0.02 2.02 16 31 H 0.07 2.07 7.44 -2.39 -0.02 2.06 16 32 H 0.09 4.05 7.40 -2.91 -0.02 4.03 16 33 H 0.11 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.16 2.30 8.06 -2.92 -0.02 2.27 16 37 H 0.16 3.07 7.13 -2.91 -0.02 3.05 16 38 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.12 5.31 4.99 -2.91 -0.01 5.29 16 41 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -82.12 358.72 4.92 -77.21 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 1.05 Total: 26.61 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 5.17 Total: -45.37 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.16 Total: -75.39 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.06 Total: -27.79 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.12 Total: -1.34 kcal Total: -82.12 4.92 -77.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050123833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.023 kcal (2) G-P(sol) polarization free energy of solvation -82.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds