Wall clock time and date at job start Tue Mar 31 2020 15:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36649 * 119.99896 * 2 1 4 4 H 1.08000 * 119.99818 * 183.05164 * 3 2 1 5 5 C 1.39204 * 119.99926 * 3.04108 * 3 2 1 6 6 N 1.31257 * 120.00579 * 5.38534 * 5 3 2 7 7 Si 1.86808 * 119.99640 * 185.38157 * 5 3 2 8 8 H 1.48495 * 109.46861 * 90.00485 * 7 5 3 9 9 H 1.48507 * 109.46907 * 210.00082 * 7 5 3 10 10 H 1.48490 * 109.47252 * 330.00184 * 7 5 3 11 11 C 1.34773 * 119.99695 * 179.97438 * 2 1 3 12 12 O 1.21602 * 120.00041 * 175.33472 * 11 2 1 13 13 C 1.47716 * 120.00439 * 355.33648 * 11 2 1 14 14 C 1.39333 * 120.21762 * 57.40029 * 13 11 2 15 15 C 1.38147 * 119.99853 * 180.02562 * 14 13 11 16 16 C 1.38459 * 120.43643 * 0.02831 * 15 14 13 17 17 C 1.38131 * 120.43912 * 359.67122 * 16 15 14 18 18 C 1.39377 * 119.98912 * 0.60132 * 17 16 15 19 19 C 1.47742 * 120.21527 * 179.69444 * 18 17 16 20 20 O 1.21585 * 120.00009 * 76.24515 * 19 18 17 21 21 C 1.47593 * 120.00434 * 256.51570 * 19 18 17 22 22 C 1.39783 * 120.12829 * 5.01242 * 21 19 18 23 23 C 1.37782 * 119.87082 * 179.78829 * 22 21 19 24 24 C 1.38702 * 120.13072 * 0.46452 * 23 22 21 25 25 F 1.35095 * 119.87318 * 179.76311 * 24 23 22 26 26 C 1.38700 * 120.25548 * 359.78967 * 24 23 22 27 27 C 1.37781 * 120.13345 * 359.97438 * 26 24 23 28 28 H 1.08997 * 109.47029 * 181.36413 * 1 2 3 29 29 H 1.09004 * 109.46874 * 301.36141 * 1 2 3 30 30 H 1.08996 * 109.47061 * 61.36426 * 1 2 3 31 31 H 0.96993 * 120.00615 * 179.97438 * 6 5 3 32 32 H 1.08006 * 120.00352 * 0.02562 * 14 13 11 33 33 H 1.07998 * 119.77964 * 179.97438 * 15 14 13 34 34 H 1.08003 * 119.78052 * 179.97438 * 16 15 14 35 35 H 1.07995 * 120.00843 * 180.30551 * 17 16 15 36 36 H 1.08005 * 120.06126 * 359.97438 * 22 21 19 37 37 H 1.08004 * 119.93432 * 180.25226 * 23 22 21 38 38 H 1.08008 * 119.93247 * 179.97438 * 26 24 23 39 39 H 1.07998 * 120.07054 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1483 1.1834 0.0000 4 1 3.2271 1.1841 -0.0498 5 6 1.4537 2.3881 0.0640 6 7 0.1518 2.3871 0.2307 7 14 2.3747 4.0063 -0.0874 8 1 2.4409 4.4064 -1.5159 9 1 1.6638 5.0548 0.6878 10 1 3.7511 3.8443 0.4456 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1691 -0.0851 13 6 1.4040 -2.4443 0.1051 14 6 0.4229 -2.7674 -0.8300 15 6 -0.2620 -3.9628 -0.7275 16 6 0.0188 -4.8462 0.3010 17 6 0.9922 -4.5469 1.2343 18 6 1.6902 -3.3434 1.1515 19 6 2.7276 -3.0152 2.1509 20 8 3.8188 -3.5484 2.0921 21 6 2.4375 -2.0447 3.2244 22 6 1.1519 -1.5135 3.3613 23 6 0.8859 -0.6112 4.3680 24 6 1.8932 -0.2224 5.2387 25 9 1.6277 0.6662 6.2210 26 6 3.1721 -0.7422 5.1045 27 6 3.4488 -1.6489 4.1046 28 1 -0.3633 -1.0274 0.0245 29 1 -0.3633 0.5349 0.8776 30 1 -0.3633 0.4925 -0.9019 31 1 -0.3322 3.2265 0.2756 32 1 0.1977 -2.0833 -1.6349 33 1 -1.0221 -4.2094 -1.4540 34 1 -0.5233 -5.7776 0.3712 35 1 1.2090 -5.2432 2.0308 36 1 0.3678 -1.8120 2.6811 37 1 -0.1082 -0.2031 4.4773 38 1 3.9526 -0.4356 5.7851 39 1 4.4451 -2.0526 4.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060294337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:34 Heat of formation + Delta-G solvation = -54.107203 kcal Electronic energy + Delta-G solvation = -27928.816059 eV Core-core repulsion = 23909.342013 eV Total energy + Delta-G solvation = -4019.474046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08025 -41.72274 -40.41121 -39.26536 -38.73597 -36.78392 -33.81025 -33.09713 -32.19161 -32.05439 -31.34371 -28.31628 -26.81144 -25.94566 -24.26678 -24.12971 -23.51885 -21.71798 -20.62474 -19.09565 -18.95546 -18.34910 -18.02714 -17.62489 -17.00203 -16.81944 -16.66096 -16.57334 -16.10362 -15.64193 -15.52301 -15.46117 -14.97598 -14.77155 -14.71208 -14.40652 -14.23121 -13.99994 -13.87246 -13.52511 -13.43437 -13.26102 -12.87707 -12.84059 -12.67106 -12.32297 -12.20879 -12.16683 -12.14754 -11.11085 -11.01026 -10.52798 -10.26104 -9.95894 -9.92111 -9.89140 -9.78321 -8.28945 -5.93707 -0.62097 0.02050 0.14051 0.26515 1.15212 1.32159 1.37349 1.47940 1.93686 2.20562 2.47944 2.67894 2.81825 3.00334 3.05614 3.09663 3.55842 3.76140 3.86559 3.92384 3.97253 4.10193 4.17445 4.23396 4.45242 4.46587 4.63565 4.72810 4.75880 4.78770 4.92757 4.97180 5.02075 5.15161 5.16886 5.33516 5.38798 5.39782 5.45949 5.52543 5.68184 5.91172 5.98590 6.27234 6.42954 7.10076 7.39122 7.95210 8.58658 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.008546 B = 0.006852 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.439988 B = 4085.675039 C = 6046.077459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.431 5.431 3 C -0.339 4.339 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.879 5.879 7 Si 0.983 3.017 8 H -0.269 1.269 9 H -0.264 1.264 10 H -0.281 1.281 11 C 0.452 3.548 12 O -0.642 6.642 13 C -0.084 4.084 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.097 4.097 17 C -0.089 4.089 18 C -0.139 4.139 19 C 0.452 3.548 20 O -0.475 6.475 21 C -0.190 4.190 22 C -0.029 4.029 23 C -0.161 4.161 24 C 0.124 3.876 25 F -0.134 7.134 26 C -0.163 4.163 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.275 0.725 32 H 0.130 0.870 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -10.132 6.298 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.146 5.146 3 C -0.467 4.467 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.518 5.518 7 Si 0.806 3.194 8 H -0.194 1.194 9 H -0.189 1.189 10 H -0.206 1.206 11 C 0.242 3.758 12 O -0.532 6.532 13 C -0.087 4.087 14 C -0.127 4.127 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.107 4.107 18 C -0.141 4.141 19 C 0.331 3.669 20 O -0.352 6.352 21 C -0.191 4.191 22 C -0.047 4.047 23 C -0.179 4.179 24 C 0.104 3.896 25 F -0.112 7.112 26 C -0.181 4.181 27 C -0.062 4.062 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.555 -10.155 6.284 14.131 hybrid contribution 0.859 1.530 -0.159 1.762 sum -6.696 -8.625 6.125 12.520 Atomic orbital electron populations 1.22002 0.78282 0.99171 1.03506 1.43682 1.07287 1.04101 1.59547 1.19631 0.92420 0.83806 1.50890 0.91182 1.25930 0.96682 1.01622 0.95226 1.70129 1.06816 1.28366 1.46494 0.85090 0.77991 0.77427 0.78846 1.19393 1.18877 1.20579 1.18520 0.86992 0.84488 0.85759 1.90618 1.15997 1.87614 1.58954 1.19880 0.97712 0.93906 0.97245 1.21439 0.94530 0.98893 0.97796 1.21670 0.98894 0.91676 0.98637 1.21647 0.96204 1.00778 0.92827 1.21351 0.95477 0.93150 1.00742 1.20230 0.99647 0.97420 0.96781 1.20809 0.86099 0.77793 0.82182 1.90545 1.24633 1.47904 1.72133 1.20560 0.96268 1.02911 0.99332 1.21293 0.95551 0.92737 0.95117 1.21312 1.00856 0.99945 0.95794 1.18108 0.94615 0.89565 0.87291 1.91506 1.94585 1.65556 1.59598 1.21282 0.96275 0.99395 1.01151 1.21308 0.99160 0.94045 0.91680 0.91529 0.90705 0.93461 0.91403 0.85215 0.81152 0.80593 0.83240 0.83763 0.82031 0.81491 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.85 8.24 127.77 1.05 5.90 16 2 N -0.43 -22.18 3.01 -662.37 -2.00 -24.18 16 3 C -0.34 -19.28 9.57 84.18 0.81 -18.47 16 4 H 0.07 4.39 7.16 -2.91 -0.02 4.37 16 5 C 0.01 0.43 5.44 85.01 0.46 0.89 16 6 N -0.88 -43.42 9.48 21.70 0.21 -43.22 16 7 Si 0.98 42.11 29.56 68.60 2.03 44.14 16 8 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 C 0.45 23.27 6.43 86.75 0.56 23.83 16 12 O -0.64 -39.50 16.07 -4.04 -0.06 -39.57 16 13 C -0.08 -3.33 4.77 -19.86 -0.09 -3.43 16 14 C -0.11 -3.29 7.42 22.51 0.17 -3.12 16 15 C -0.09 -1.85 10.03 22.30 0.22 -1.63 16 16 C -0.10 -1.77 10.03 22.30 0.22 -1.55 16 17 C -0.09 -2.24 9.78 22.52 0.22 -2.02 16 18 C -0.14 -4.99 4.27 -19.84 -0.08 -5.07 16 19 C 0.45 18.38 5.22 27.26 0.14 18.53 16 20 O -0.48 -21.78 17.12 -3.98 -0.07 -21.85 16 21 C -0.19 -7.03 5.83 -20.06 -0.12 -7.15 16 22 C -0.03 -0.95 9.45 22.54 0.21 -0.74 16 23 C -0.16 -4.81 10.01 22.27 0.22 -4.59 16 24 C 0.12 3.71 7.31 22.49 0.16 3.87 16 25 F -0.13 -3.86 17.26 44.97 0.78 -3.08 16 26 C -0.16 -4.75 10.01 22.27 0.22 -4.53 16 27 C -0.04 -1.49 9.59 22.54 0.22 -1.27 16 28 H 0.07 2.36 4.51 -2.39 -0.01 2.35 16 29 H 0.07 3.39 6.56 -2.38 -0.02 3.38 16 30 H 0.05 2.11 7.49 -2.39 -0.02 2.09 16 31 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 32 H 0.13 3.93 7.56 -2.91 -0.02 3.91 16 33 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.14 4.43 7.09 -2.91 -0.02 4.41 16 37 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.14 4.68 7.66 -2.91 -0.02 4.65 16 Total: -1.00 -75.51 343.83 6.58 -68.93 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.10 Total: 19.37 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.60 Total: -0.55 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -1.79 Total: -67.40 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -0.13 Total: -61.41 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -75.51 6.58 -68.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060294337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.826 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds