Wall clock time and date at job start Tue Mar 31 2020 15:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.46745 * 2 1 4 4 C 1.35999 * 116.99774 * 179.97438 * 3 2 1 5 5 C 1.38081 * 119.98674 * 0.26479 * 4 3 2 6 6 C 1.39998 * 119.82763 * 180.23022 * 5 4 3 7 7 C 1.46941 * 120.10378 * 179.78693 * 6 5 4 8 8 C 1.35142 * 120.00353 * 179.71700 * 7 6 5 9 9 C 1.41797 * 120.00302 * 179.97438 * 8 7 6 10 10 O 1.21783 * 119.99814 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00053 * 179.72975 * 9 8 7 12 12 C 1.36739 * 119.99995 * 180.27785 * 11 9 8 13 13 H 1.08002 * 120.00289 * 0.02562 * 12 11 9 14 14 C 1.39095 * 119.99992 * 179.97438 * 12 11 9 15 15 N 1.31344 * 119.99815 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00105 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99632 * 16 14 12 18 18 H 1.48499 * 109.47134 * 210.00152 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99773 * 16 14 12 20 20 C 1.39999 * 119.79844 * 359.50598 * 6 5 4 21 21 C 1.37745 * 119.97284 * 0.25851 * 20 6 5 22 22 C 1.38869 * 120.17419 * 359.97322 * 21 20 6 23 23 O 1.35832 * 119.89880 * 180.02562 * 22 21 20 24 24 C 1.42904 * 116.99805 * 0.02562 * 23 22 21 25 25 F 1.39892 * 109.46966 * 299.99834 * 24 23 22 26 26 F 1.39899 * 109.46792 * 60.00106 * 24 23 22 27 27 H 1.09005 * 109.47161 * 60.00531 * 1 2 3 28 28 H 1.09007 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.48098 * 300.00115 * 1 2 3 30 30 H 1.09001 * 109.47250 * 239.99904 * 2 1 3 31 31 H 1.09003 * 109.46464 * 119.99725 * 2 1 3 32 32 H 1.08000 * 120.09202 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.99589 * 359.71629 * 7 6 5 34 34 H 1.08002 * 119.99525 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99736 * 0.27190 * 11 9 8 36 36 H 0.97005 * 119.99884 * 180.02562 * 15 14 12 37 37 H 1.07996 * 120.01072 * 180.23781 * 20 6 5 38 38 H 1.07993 * 119.90875 * 180.02562 * 21 20 6 39 39 H 1.08995 * 109.46824 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.1954 0.4302 -0.0045 6 6 5.5828 0.6175 0.0010 7 6 6.4832 -0.5436 0.0004 8 6 7.8222 -0.3605 -0.0001 9 6 8.6911 -1.4810 -0.0001 10 8 8.2308 -2.6085 -0.0001 11 7 10.0264 -1.2983 -0.0061 12 6 10.8643 -2.3789 -0.0118 13 1 10.4561 -3.3788 -0.0119 14 6 12.2424 -2.1903 -0.0186 15 7 13.0472 -3.2283 -0.0236 16 14 12.9485 -0.4609 -0.0191 17 1 13.1427 -0.0052 1.3808 18 1 14.2545 -0.4597 -0.7258 19 1 12.0095 0.4569 -0.7127 20 6 6.1097 1.9146 0.0010 21 6 5.2633 3.0012 0.0011 22 6 3.8872 2.8142 0.0005 23 8 3.0577 3.8897 0.0001 24 6 3.6698 5.1811 -0.0004 25 9 4.4653 5.3204 1.1418 26 9 4.4654 5.3195 -1.1427 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 3.7840 -0.5683 -0.0084 33 1 6.0750 -1.5435 0.0004 34 1 8.2304 0.6394 0.0003 35 1 10.3930 -0.4003 -0.0064 36 1 14.0083 -3.0968 -0.0279 37 1 7.1794 2.0630 0.0013 38 1 5.6708 4.0013 0.0007 39 1 2.8967 5.9495 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060332217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:56 Heat of formation + Delta-G solvation = -194.590991 kcal Electronic energy + Delta-G solvation = -26701.288728 eV Core-core repulsion = 22244.953623 eV Total energy + Delta-G solvation = -4456.335105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.29587 -48.28853 -41.61785 -40.50578 -39.50523 -38.42989 -36.20300 -34.46594 -33.83820 -32.69752 -31.46236 -30.10779 -27.78184 -26.67482 -25.04668 -24.64709 -22.83480 -22.26884 -21.10726 -20.23703 -19.83241 -19.34518 -18.87116 -18.17861 -18.03284 -17.21286 -17.14607 -16.79891 -16.58528 -15.81151 -15.62240 -15.56184 -15.54811 -15.09048 -14.95373 -14.77403 -14.63266 -14.54132 -14.24419 -13.94520 -13.85117 -13.62345 -13.45357 -13.15793 -13.00728 -13.00016 -12.79560 -12.47851 -12.31404 -12.03458 -11.93551 -11.78304 -11.60148 -10.86921 -10.61207 -10.33034 -9.71749 -8.86251 -8.50429 -6.04636 -0.57657 0.21577 0.89160 1.29305 1.37960 1.43013 1.58945 2.10115 2.18182 2.34505 2.56452 2.71206 2.96774 3.22198 3.48140 3.64789 3.67455 3.71765 3.82407 4.04208 4.06230 4.10426 4.15515 4.24057 4.38482 4.44286 4.47213 4.82381 4.91375 4.95647 4.97663 5.07669 5.24201 5.29689 5.37189 5.56064 5.58765 5.69935 5.90859 6.34911 6.51099 6.79687 7.30344 7.89535 8.66307 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.002760 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.626353 B =10143.445943 C =12010.954344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 O -0.319 6.319 4 C 0.107 3.893 5 C -0.159 4.159 6 C -0.053 4.053 7 C -0.035 4.035 8 C -0.186 4.186 9 C 0.467 3.533 10 O -0.641 6.641 11 N -0.570 5.570 12 C -0.330 4.330 13 H 0.059 0.941 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.964 3.036 17 H -0.254 1.254 18 H -0.270 1.270 19 H -0.231 1.231 20 C -0.105 4.105 21 C -0.156 4.156 22 C 0.069 3.931 23 O -0.320 6.320 24 C 0.404 3.596 25 F -0.209 7.209 26 F -0.209 7.209 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.154 0.846 35 H 0.392 0.608 36 H 0.284 0.716 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.775 21.998 0.024 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 O -0.233 6.233 4 C 0.061 3.939 5 C -0.177 4.177 6 C -0.053 4.053 7 C -0.057 4.057 8 C -0.207 4.207 9 C 0.260 3.740 10 O -0.531 6.531 11 N -0.208 5.208 12 C -0.459 4.459 13 H 0.077 0.923 14 C -0.211 4.211 15 N -0.559 5.559 16 Si 0.783 3.217 17 H -0.178 1.178 18 H -0.195 1.195 19 H -0.155 1.155 20 C -0.124 4.124 21 C -0.175 4.175 22 C 0.025 3.975 23 O -0.237 6.237 24 C 0.315 3.685 25 F -0.191 7.191 26 F -0.191 7.191 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.140 0.860 34 H 0.172 0.828 35 H 0.228 0.772 36 H 0.093 0.907 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -24.135 21.307 0.021 32.194 hybrid contribution 1.392 -0.013 -0.001 1.392 sum -22.743 21.293 0.019 31.155 Atomic orbital electron populations 1.21781 0.91072 1.04148 1.03331 1.23142 0.97270 0.80659 1.02381 1.86134 1.17209 1.31136 1.88869 1.18069 0.83790 0.90704 1.01298 1.21432 0.92506 0.98662 1.05125 1.18784 0.92380 0.92798 1.01347 1.22143 0.92478 0.97479 0.93600 1.22031 0.94267 0.98519 1.05857 1.17462 0.82712 0.90186 0.83670 1.90659 1.76664 1.27756 1.58005 1.42025 1.05839 1.08092 1.64858 1.19091 0.88619 0.88199 1.50004 0.92265 1.26213 0.95330 1.04040 0.95565 1.69759 1.04908 1.33038 1.48219 0.85378 0.79255 0.76844 0.80241 1.17817 1.19466 1.15465 1.21393 1.01273 0.90417 0.99269 1.21417 0.90459 1.01433 1.04176 1.18432 0.89350 0.85077 1.04673 1.86655 1.35227 1.13281 1.88583 1.24295 0.86065 0.87191 0.70946 1.93080 1.77735 1.95581 1.52663 1.93082 1.77737 1.95592 1.52662 0.91665 0.88322 0.91658 0.91144 0.91146 0.82612 0.86011 0.82821 0.77202 0.90676 0.82956 0.83014 0.74983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.32 -7.02 9.91 -79.51 -0.79 -7.81 16 4 C 0.11 2.55 6.69 22.52 0.15 2.70 16 5 C -0.16 -3.72 8.78 22.66 0.20 -3.52 16 6 C -0.05 -1.36 5.87 -20.14 -0.12 -1.48 16 7 C -0.04 -1.11 9.41 23.84 0.22 -0.89 16 8 C -0.19 -6.45 9.19 22.44 0.21 -6.25 16 9 C 0.47 22.38 7.52 85.12 0.64 23.02 16 10 O -0.64 -37.08 15.68 -4.61 -0.07 -37.15 16 11 N -0.57 -27.85 5.07 -315.00 -1.60 -29.45 16 12 C -0.33 -19.52 10.16 84.13 0.85 -18.66 16 13 H 0.06 4.16 7.38 -2.91 -0.02 4.14 16 14 C -0.01 -0.61 5.50 84.97 0.47 -0.14 16 15 N -0.92 -54.80 13.95 21.69 0.30 -54.50 16 16 Si 0.96 38.38 27.74 68.60 1.90 40.29 16 17 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 18 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 19 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 20 C -0.11 -2.44 9.40 22.58 0.21 -2.23 16 21 C -0.16 -3.45 8.23 22.30 0.18 -3.26 16 22 C 0.07 1.60 6.51 22.71 0.15 1.74 16 23 O -0.32 -6.24 10.20 -77.63 -0.79 -7.03 16 24 C 0.40 4.86 5.98 113.37 0.68 5.54 16 25 F -0.21 -3.26 15.57 44.97 0.70 -2.56 16 26 F -0.21 -3.26 15.57 44.97 0.70 -2.56 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.99 7.65 -2.39 -0.02 0.97 16 31 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 32 H 0.16 3.07 6.28 -2.91 -0.02 3.06 16 33 H 0.12 4.15 7.45 -2.91 -0.02 4.13 16 34 H 0.15 4.02 6.07 -2.91 -0.02 4.00 16 35 H 0.39 15.76 5.72 -92.71 -0.53 15.23 16 36 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 37 H 0.15 2.96 6.15 -2.91 -0.02 2.95 16 38 H 0.15 2.93 5.06 -2.91 -0.01 2.92 16 39 H 0.23 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -80.69 343.70 5.87 -74.82 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.54 Total: 29.26 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 4.98 Total: -3.30 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.29 Total: -83.95 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.65 Total: -51.99 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.40 Total: -5.12 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.29 kcal Total: -80.69 5.87 -74.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.774 kcal (2) G-P(sol) polarization free energy of solvation -80.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds