Wall clock time and date at job start Tue Mar 31 2020 15:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46959 * 2 1 4 4 C 1.46498 * 120.00128 * 270.00268 * 3 2 1 5 5 C 1.50701 * 109.46767 * 270.00264 * 4 3 2 6 6 H 1.07995 * 120.00648 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99436 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99708 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47686 * 89.99614 * 9 7 5 11 11 H 1.48503 * 109.47191 * 210.00022 * 9 7 5 12 12 H 1.48512 * 109.47063 * 329.99473 * 9 7 5 13 13 C 1.34779 * 119.99646 * 90.00307 * 3 2 1 14 14 O 1.21278 * 119.99746 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00188 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.47392 * 180.02562 * 15 13 3 17 17 C 1.34741 * 117.00193 * 179.97438 * 16 15 13 18 18 O 1.21512 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.47433 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.39794 * 120.14753 * 0.02562 * 19 17 16 21 21 C 1.37711 * 119.89716 * 180.23045 * 20 19 17 22 22 C 1.38774 * 120.20213 * 359.46738 * 21 20 19 23 23 F 1.35101 * 119.85350 * 180.28033 * 22 21 20 24 24 C 1.38506 * 120.29441 * 0.55198 * 22 21 20 25 25 C 1.38179 * 120.09714 * 359.70732 * 24 22 21 26 26 F 1.35100 * 120.09928 * 180.02562 * 25 24 22 27 27 H 1.09002 * 109.47152 * 299.99674 * 1 2 3 28 28 H 1.08994 * 109.47383 * 59.99256 * 1 2 3 29 29 H 1.09006 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46717 * 240.00488 * 2 1 3 31 31 H 1.08994 * 109.47383 * 120.00744 * 2 1 3 32 32 H 1.09002 * 109.47027 * 29.99960 * 4 3 2 33 33 H 1.08997 * 109.47023 * 150.00464 * 4 3 2 34 34 H 0.97001 * 119.99784 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47360 * 59.99431 * 15 13 3 36 36 H 1.09003 * 109.47181 * 299.99871 * 15 13 3 37 37 H 1.08002 * 120.04587 * 359.94506 * 20 19 17 38 38 H 1.08010 * 119.89725 * 179.72162 * 21 20 19 39 39 H 1.07998 * 119.94851 * 179.72338 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3491 3.1268 -3.6175 9 14 5.9132 2.0965 -3.4172 10 1 5.9759 0.8760 -4.2608 11 1 6.3927 3.2642 -4.1995 12 1 6.7734 1.9156 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3063 2.1956 3.5760 17 6 2.1345 1.7101 4.8211 18 8 1.7330 0.5743 4.9803 19 6 2.4338 2.5568 5.9904 20 6 2.8953 3.8641 5.8108 21 6 3.1778 4.6489 6.9066 22 6 2.9951 4.1497 8.1885 23 9 3.2690 4.9277 9.2585 24 6 2.5385 2.8555 8.3759 25 6 2.2564 2.0555 7.2851 26 9 1.8106 0.7934 7.4678 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6752 3.5173 -4.4435 35 1 2.6229 0.4186 2.5298 36 1 0.9446 1.0113 2.5303 37 1 3.0345 4.2563 4.8142 38 1 3.5387 5.6574 6.7679 39 1 2.4026 2.4712 9.3760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060827431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:07 Heat of formation + Delta-G solvation = -177.625520 kcal Electronic energy + Delta-G solvation = -26971.143336 eV Core-core repulsion = 22515.543909 eV Total energy + Delta-G solvation = -4455.599427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.56787 -49.38808 -40.72382 -39.24009 -38.63709 -36.43836 -35.35244 -32.88030 -31.89291 -31.15371 -30.21224 -29.13189 -26.64868 -24.62271 -23.64119 -23.11153 -22.61984 -21.36963 -18.93028 -18.61197 -18.35406 -17.54899 -16.88520 -16.81359 -16.52007 -16.28375 -16.25454 -15.98436 -15.71688 -15.44922 -14.89175 -14.73172 -14.55014 -14.29969 -13.80123 -13.49166 -13.37465 -13.02136 -12.87202 -12.57403 -12.41585 -12.15071 -12.09307 -11.98352 -11.66943 -11.26954 -10.97917 -10.92891 -10.78054 -10.66337 -10.56180 -10.17880 -9.69742 -9.66684 -9.33216 -9.06292 -8.47905 -7.80159 -6.09028 -4.14013 -0.04204 0.50216 2.07977 2.21952 3.01189 3.19255 3.26843 3.27881 3.34857 3.39446 3.75034 3.77924 4.03676 4.30860 4.37496 4.43196 4.61004 4.80718 5.02838 5.15508 5.17972 5.24268 5.25862 5.33096 5.38962 5.53253 5.54973 5.55270 5.69931 5.96433 6.11836 6.16088 6.19502 6.41824 6.95078 7.35270 7.41851 7.52281 7.86870 8.16676 8.24529 8.79436 8.94642 9.51172 10.99132 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.002686 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.251970 B =10421.461597 C =11508.589475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.051 3.949 16 O -0.322 6.322 17 C 0.508 3.492 18 O -0.495 6.495 19 C -0.172 4.172 20 C 0.002 3.998 21 C -0.177 4.177 22 C 0.166 3.834 23 F -0.124 7.124 24 C -0.209 4.209 25 C 0.196 3.804 26 F -0.105 7.105 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.167 0.833 38 H 0.155 0.845 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -1.879 21.572 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.237 6.237 17 C 0.352 3.648 18 O -0.384 6.384 19 C -0.174 4.174 20 C -0.016 4.016 21 C -0.196 4.196 22 C 0.146 3.854 23 F -0.102 7.102 24 C -0.229 4.229 25 C 0.176 3.824 26 F -0.083 7.083 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.185 0.815 38 H 0.172 0.828 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.103 -1.518 21.425 21.867 hybrid contribution 0.850 -0.517 -0.171 1.009 sum -3.253 -2.035 21.254 21.598 Atomic orbital electron populations 1.22234 0.96478 1.01752 1.02427 1.21523 0.93797 0.83900 1.03097 1.48213 1.63700 1.13425 1.07109 1.19341 0.96505 0.93710 0.77513 1.21424 0.96841 1.32094 1.06424 0.92375 1.24933 0.97934 0.94824 0.96347 1.69929 1.35740 1.33294 1.14318 0.86484 0.84548 0.77701 0.78618 1.20627 1.21054 1.19854 1.19660 0.79756 0.87139 0.84230 1.90708 1.44599 1.17494 1.86737 1.23033 1.02967 0.92600 0.84023 1.86568 1.78672 1.44712 1.13786 1.20689 0.75176 0.85472 0.83461 1.90909 1.41974 1.18784 1.86729 1.19237 1.11706 0.96475 0.90004 1.21456 0.89071 0.90172 1.00872 1.21274 1.05342 1.02845 0.90098 1.17607 0.95836 0.88131 0.83793 1.91572 1.90611 1.73780 1.54252 1.20953 1.07962 0.93838 1.00148 1.17227 0.93685 0.79998 0.91474 1.91645 1.85258 1.35616 1.95774 0.93125 0.91760 0.91854 0.89360 0.91707 0.94600 0.93663 0.92644 0.88407 0.88497 0.81525 0.82772 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 4 C 0.25 6.26 5.16 -5.19 -0.03 6.23 16 5 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 9 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.51 10.33 7.75 -10.99 -0.09 10.24 16 14 O -0.52 -12.78 16.08 -14.10 -0.23 -13.01 16 15 C 0.05 0.80 4.51 36.00 0.16 0.96 16 16 O -0.32 -5.08 9.00 -47.28 -0.43 -5.50 16 17 C 0.51 7.25 7.89 34.48 0.27 7.52 16 18 O -0.50 -7.92 15.13 -19.28 -0.29 -8.22 16 19 C -0.17 -1.96 5.88 -104.92 -0.62 -2.57 16 20 C 0.00 0.02 9.61 -39.19 -0.38 -0.35 16 21 C -0.18 -1.31 10.00 -39.58 -0.40 -1.71 16 22 C 0.17 1.29 7.30 -39.28 -0.29 1.00 16 23 F -0.12 -0.98 17.26 2.25 0.04 -0.94 16 24 C -0.21 -1.66 9.99 -39.50 -0.39 -2.05 16 25 C 0.20 2.04 7.28 -38.96 -0.28 1.76 16 26 F -0.11 -1.27 15.55 2.25 0.04 -1.24 16 27 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.10 1.38 7.40 -51.93 -0.38 1.00 16 36 H 0.10 1.32 7.18 -51.93 -0.37 0.94 16 37 H 0.17 1.54 7.61 -52.49 -0.40 1.14 16 38 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -33.48 353.95 -6.67 -40.15 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.33 Total: -2.69 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.10 Total: 7.41 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.31 Total: -37.76 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.94 Total: -26.73 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.07 Total: -2.18 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.48 -6.67 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060827431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.476 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds