Wall clock time and date at job start Tue Mar 31 2020 15:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46959 * 2 1 4 4 C 1.46498 * 120.00128 * 270.00268 * 3 2 1 5 5 C 1.50701 * 109.46767 * 270.00264 * 4 3 2 6 6 H 1.07995 * 120.00648 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99436 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99708 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47686 * 89.99614 * 9 7 5 11 11 H 1.48503 * 109.47191 * 210.00022 * 9 7 5 12 12 H 1.48512 * 109.47063 * 329.99473 * 9 7 5 13 13 C 1.34779 * 119.99646 * 90.00307 * 3 2 1 14 14 O 1.21278 * 119.99746 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00188 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.47392 * 180.02562 * 15 13 3 17 17 C 1.34741 * 117.00193 * 179.97438 * 16 15 13 18 18 O 1.21512 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.47433 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.39794 * 120.14753 * 0.02562 * 19 17 16 21 21 C 1.37711 * 119.89716 * 180.23045 * 20 19 17 22 22 C 1.38774 * 120.20213 * 359.46738 * 21 20 19 23 23 F 1.35101 * 119.85350 * 180.28033 * 22 21 20 24 24 C 1.38506 * 120.29441 * 0.55198 * 22 21 20 25 25 C 1.38179 * 120.09714 * 359.70732 * 24 22 21 26 26 F 1.35100 * 120.09928 * 180.02562 * 25 24 22 27 27 H 1.09002 * 109.47152 * 299.99674 * 1 2 3 28 28 H 1.08994 * 109.47383 * 59.99256 * 1 2 3 29 29 H 1.09006 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46717 * 240.00488 * 2 1 3 31 31 H 1.08994 * 109.47383 * 120.00744 * 2 1 3 32 32 H 1.09002 * 109.47027 * 29.99960 * 4 3 2 33 33 H 1.08997 * 109.47023 * 150.00464 * 4 3 2 34 34 H 0.97001 * 119.99784 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47360 * 59.99431 * 15 13 3 36 36 H 1.09003 * 109.47181 * 299.99871 * 15 13 3 37 37 H 1.08002 * 120.04587 * 359.94506 * 20 19 17 38 38 H 1.08010 * 119.89725 * 179.72162 * 21 20 19 39 39 H 1.07998 * 119.94851 * 179.72338 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3491 3.1268 -3.6175 9 14 5.9132 2.0965 -3.4172 10 1 5.9759 0.8760 -4.2608 11 1 6.3927 3.2642 -4.1995 12 1 6.7734 1.9156 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3063 2.1956 3.5760 17 6 2.1345 1.7101 4.8211 18 8 1.7330 0.5743 4.9803 19 6 2.4338 2.5568 5.9904 20 6 2.8953 3.8641 5.8108 21 6 3.1778 4.6489 6.9066 22 6 2.9951 4.1497 8.1885 23 9 3.2690 4.9277 9.2585 24 6 2.5385 2.8555 8.3759 25 6 2.2564 2.0555 7.2851 26 9 1.8106 0.7934 7.4678 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6752 3.5173 -4.4435 35 1 2.6229 0.4186 2.5298 36 1 0.9446 1.0113 2.5303 37 1 3.0345 4.2563 4.8142 38 1 3.5387 5.6574 6.7679 39 1 2.4026 2.4712 9.3760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060827431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:07 Heat of formation + Delta-G solvation = -196.265598 kcal Electronic energy + Delta-G solvation = -26971.951631 eV Core-core repulsion = 22515.543909 eV Total energy + Delta-G solvation = -4456.407721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.22751 -50.20066 -41.86974 -40.65327 -39.57675 -37.66241 -36.97228 -34.93295 -32.68843 -31.90155 -31.70490 -30.54731 -28.42037 -25.63776 -24.80121 -24.35678 -24.02465 -22.37932 -20.33825 -19.54730 -19.29003 -18.67298 -18.45226 -17.96933 -17.89179 -17.58016 -17.14448 -17.03549 -16.80733 -16.49755 -16.26336 -16.00980 -15.60698 -15.40721 -14.88177 -14.75196 -14.60430 -14.38662 -13.97808 -13.80511 -13.61139 -13.60671 -13.28111 -13.13517 -13.06476 -12.68531 -12.63618 -12.50364 -12.23563 -12.07805 -11.89374 -11.81449 -11.71654 -10.74060 -10.63562 -10.35277 -10.06424 -9.54417 -8.22671 -6.36984 -0.83298 -0.17187 1.07219 1.13570 1.38136 1.40717 1.50808 1.61409 2.22788 2.28201 2.42810 2.56462 3.04007 3.07626 3.31978 3.41037 3.43646 3.69236 3.86849 3.93141 3.95302 4.15044 4.38012 4.44440 4.50515 4.58968 4.75018 4.82376 4.86988 4.88964 4.94799 5.03037 5.08005 5.21133 5.36271 5.47333 5.54487 5.79691 6.04694 6.38456 6.61408 6.72264 7.20725 7.36785 8.84747 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.002686 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.251970 B =10421.461597 C =11508.589475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.062 3.938 16 O -0.337 6.337 17 C 0.510 3.490 18 O -0.516 6.516 19 C -0.190 4.190 20 C 0.001 3.999 21 C -0.163 4.163 22 C 0.174 3.826 23 F -0.120 7.120 24 C -0.195 4.195 25 C 0.185 3.815 26 F -0.119 7.119 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -2.732 23.387 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.014 4.014 16 O -0.252 6.252 17 C 0.356 3.644 18 O -0.407 6.407 19 C -0.193 4.193 20 C -0.017 4.017 21 C -0.181 4.181 22 C 0.154 3.846 23 F -0.098 7.098 24 C -0.214 4.214 25 C 0.164 3.836 26 F -0.097 7.097 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.539 -2.417 23.257 23.648 hybrid contribution 0.642 -0.195 -0.660 0.941 sum -2.897 -2.612 22.597 22.931 Atomic orbital electron populations 1.22178 0.94346 1.03762 1.01873 1.21866 0.95543 0.81033 1.04412 1.48199 1.63580 1.15225 1.05701 1.18799 0.95552 0.91751 0.79694 1.21703 0.97827 1.32134 1.06663 0.92731 1.25830 1.02317 0.94417 0.96408 1.70045 1.37759 1.34091 1.14785 0.85422 0.79065 0.78147 0.78216 1.18937 1.20661 1.19744 1.20436 0.78413 0.86664 0.85660 1.90672 1.47002 1.19960 1.87692 1.22884 1.04904 0.92005 0.81640 1.86569 1.79053 1.45140 1.14437 1.21132 0.74396 0.85580 0.83320 1.90886 1.43259 1.19728 1.86806 1.19228 1.13667 0.97095 0.89264 1.21429 0.89251 0.89608 1.01415 1.21487 1.03789 1.03538 0.89327 1.17622 0.95124 0.87983 0.83889 1.91592 1.90461 1.73652 1.54125 1.21119 1.06396 0.93463 1.00461 1.17357 0.94623 0.79871 0.91707 1.91608 1.85645 1.36596 1.95820 0.92397 0.93632 0.88485 0.89987 0.88434 0.95290 0.98013 0.92357 0.86352 0.85914 0.81924 0.80277 0.80071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.09 2.74 5.93 86.38 0.51 3.26 16 3 N -0.59 -24.56 2.46 -826.17 -2.03 -26.59 16 4 C 0.26 13.85 5.16 85.63 0.44 14.29 16 5 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 9 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.50 20.72 7.75 87.66 0.68 21.40 16 14 O -0.57 -29.43 16.08 15.77 0.25 -29.18 16 15 C 0.06 1.89 4.51 71.23 0.32 2.21 16 16 O -0.34 -10.54 9.00 -50.13 -0.45 -10.99 16 17 C 0.51 14.33 7.89 70.24 0.55 14.89 16 18 O -0.52 -16.15 15.13 19.80 0.30 -15.85 16 19 C -0.19 -4.20 5.88 -20.06 -0.12 -4.32 16 20 C 0.00 0.02 9.61 22.52 0.22 0.24 16 21 C -0.16 -2.04 10.00 22.27 0.22 -1.82 16 22 C 0.17 2.22 7.30 22.46 0.16 2.38 16 23 F -0.12 -1.54 17.26 44.97 0.78 -0.76 16 24 C -0.20 -2.64 9.99 22.32 0.22 -2.41 16 25 C 0.18 3.62 7.28 22.68 0.17 3.78 16 26 F -0.12 -2.79 15.55 44.97 0.70 -2.09 16 27 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 31 H 0.10 2.24 6.44 -2.39 -0.02 2.23 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.53 16 33 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.12 3.12 7.40 -2.39 -0.02 3.10 16 36 H 0.12 3.09 7.18 -2.39 -0.02 3.07 16 37 H 0.16 2.99 7.61 -2.91 -0.02 2.97 16 38 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -75.28 353.95 7.78 -67.50 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.10 Total: 5.52 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 4.82 Total: 21.12 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.74 Total: -81.55 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: 0.10 Total: -56.02 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 1.48 Total: -2.86 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -75.28 7.78 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060827431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.767 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds