Wall clock time and date at job start Tue Mar 31 2020 15:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46761 * 60.00209 * 9 7 5 11 11 H 1.48496 * 109.46664 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47077 * 300.00223 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47090 * 179.97438 * 15 13 3 17 17 C 1.34729 * 116.99990 * 179.97438 * 16 15 13 18 18 O 1.21493 * 120.00133 * 359.97438 * 17 16 15 19 19 C 1.47605 * 120.00242 * 179.97438 * 17 16 15 20 20 C 1.39709 * 120.11399 * 180.02562 * 19 17 16 21 21 C 1.37833 * 119.91779 * 179.97438 * 20 19 17 22 22 C 1.38612 * 120.15228 * 0.02562 * 21 20 19 23 23 F 1.35106 * 119.88080 * 179.97438 * 22 21 20 24 24 C 1.38846 * 120.23180 * 0.02562 * 22 21 20 25 25 F 1.35104 * 119.95753 * 179.97438 * 24 22 21 26 26 C 1.38031 * 120.07713 * 359.69935 * 24 22 21 27 27 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 28 28 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 29 29 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 31 31 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 32 32 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 33 33 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 34 34 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 36 36 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 37 37 H 1.08001 * 120.03923 * 0.02562 * 20 19 17 38 38 H 1.08004 * 119.91610 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.07769 * 180.28040 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.1415 0.6403 -3.5939 11 1 6.1607 2.7971 -4.7030 12 1 6.8406 2.6211 -2.3822 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 8 2.3075 2.1951 3.5759 17 6 2.1359 1.7095 4.8209 18 8 1.7337 0.5742 4.9801 19 6 2.4367 2.5568 5.9916 20 6 2.2601 2.0555 7.2836 21 6 2.5427 2.8500 8.3738 22 6 3.0011 4.1454 8.1913 23 9 3.2759 4.9196 9.2639 24 6 3.1778 4.6503 6.9100 25 9 3.6244 5.9138 6.7385 26 6 2.9031 3.8611 5.8114 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1412 -1.1383 34 1 3.6750 3.5167 -4.4438 35 1 0.9446 1.0112 2.5303 36 1 2.6229 0.4185 2.5298 37 1 1.9034 1.0463 7.4279 38 1 2.4058 2.4626 9.3727 39 1 3.0449 4.2523 4.8148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060900619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:10 Heat of formation + Delta-G solvation = -178.145039 kcal Electronic energy + Delta-G solvation = -26830.705447 eV Core-core repulsion = 22375.083492 eV Total energy + Delta-G solvation = -4455.621955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.90239 -48.95258 -40.88880 -39.32022 -38.63297 -36.51625 -35.37078 -32.88412 -31.89323 -31.09086 -30.22571 -29.17304 -26.67914 -24.75435 -23.69686 -23.12315 -22.61559 -21.33970 -19.04218 -18.64195 -18.13653 -17.61647 -17.02240 -16.89030 -16.67722 -16.46940 -16.40795 -15.99113 -15.35867 -15.33867 -14.89758 -14.64341 -14.56733 -14.33013 -13.71488 -13.52708 -13.46676 -13.23807 -12.93486 -12.58062 -12.49174 -12.16731 -12.09478 -11.93404 -11.68804 -11.27445 -11.00770 -10.95008 -10.89210 -10.68099 -10.57221 -10.18273 -9.71824 -9.67689 -9.29822 -9.07650 -8.47497 -7.81225 -6.08884 -4.14087 -0.08002 0.48221 1.99232 2.19464 3.01050 3.17821 3.21491 3.29842 3.34593 3.37994 3.71569 3.82731 4.00148 4.26231 4.40811 4.47694 4.62547 4.77917 4.98640 5.11398 5.12151 5.23979 5.25845 5.30262 5.31295 5.40463 5.53419 5.63687 5.68060 5.94123 6.11848 6.14263 6.15137 6.40182 6.94066 7.34815 7.39488 7.46868 7.86651 8.16436 8.23533 8.78695 8.93904 9.51109 10.99265 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002696 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.917160 B =10381.452711 C =11614.343711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.323 6.323 17 C 0.511 3.489 18 O -0.501 6.501 19 C -0.104 4.104 20 C -0.035 4.035 21 C -0.139 4.139 22 C 0.101 3.899 23 F -0.122 7.122 24 C 0.059 3.941 25 F -0.121 7.121 26 C -0.064 4.064 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 -4.607 21.953 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.237 6.237 17 C 0.355 3.645 18 O -0.390 6.390 19 C -0.105 4.105 20 C -0.054 4.054 21 C -0.157 4.157 22 C 0.081 3.919 23 F -0.100 7.100 24 C 0.038 3.962 25 F -0.099 7.099 26 C -0.083 4.083 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.014 -4.127 21.779 22.727 hybrid contribution 1.055 0.037 -0.294 1.095 sum -3.959 -4.090 21.485 22.226 Atomic orbital electron populations 1.22236 0.96480 1.01740 1.02440 1.21522 0.93788 0.83904 1.03091 1.48212 1.63704 1.13420 1.07110 1.19338 0.96497 0.93708 0.77496 1.21381 0.96836 1.32284 1.06408 0.92434 1.24927 0.97921 0.94816 0.96326 1.69916 1.35786 1.33194 1.14368 0.86544 0.84676 0.78268 0.77865 1.20222 1.21144 1.20128 1.19670 0.79830 0.87167 0.84250 1.90722 1.44507 1.17487 1.86708 1.23055 1.02979 0.92570 0.84054 1.86591 1.78371 1.44799 1.13949 1.20856 0.74728 0.85429 0.83460 1.90855 1.42409 1.18936 1.86820 1.18960 1.06007 0.93772 0.91792 1.21211 0.94175 1.00674 0.89295 1.21024 1.01936 0.91478 1.01294 1.18040 1.01182 0.90486 0.82227 1.91570 1.90967 1.74239 1.53227 1.17507 1.04381 0.81873 0.92396 1.91590 1.86684 1.35626 1.96006 1.21605 0.94367 0.92397 0.99947 0.93124 0.91759 0.91855 0.89356 0.91721 0.94591 0.93676 0.92573 0.88414 0.88338 0.82509 0.82520 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.25 6.26 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.51 10.22 7.75 -10.98 -0.09 10.14 16 14 O -0.52 -12.84 16.08 -14.10 -0.23 -13.06 16 15 C 0.05 0.76 4.51 36.01 0.16 0.92 16 16 O -0.32 -4.92 9.00 -47.25 -0.43 -5.34 16 17 C 0.51 6.58 7.89 34.55 0.27 6.85 16 18 O -0.50 -6.92 16.13 -19.26 -0.31 -7.23 16 19 C -0.10 -1.07 5.87 -104.99 -0.62 -1.68 16 20 C -0.04 -0.27 9.59 -39.18 -0.38 -0.64 16 21 C -0.14 -0.91 10.01 -39.59 -0.40 -1.31 16 22 C 0.10 0.89 7.31 -39.22 -0.29 0.61 16 23 F -0.12 -1.16 17.17 2.25 0.04 -1.12 16 24 C 0.06 0.60 7.30 -39.43 -0.29 0.31 16 25 F -0.12 -1.42 17.18 2.25 0.04 -1.38 16 26 C -0.06 -0.67 9.59 -39.12 -0.38 -1.05 16 27 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 32 H 0.04 0.91 8.07 -51.92 -0.42 0.49 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.10 1.25 7.18 -51.93 -0.37 0.88 16 36 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 37 H 0.16 0.97 7.65 -52.49 -0.40 0.57 16 38 H 0.16 0.58 8.06 -52.48 -0.42 0.16 16 39 H 0.17 1.88 7.61 -52.49 -0.40 1.48 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -33.30 355.68 -6.62 -39.93 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.30 Total: -2.73 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -2.08 Total: 6.78 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.31 Total: -37.72 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.96 Total: -25.64 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.30 -6.62 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060900619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.219 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds