Wall clock time and date at job start Tue Mar 31 2020 15:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46761 * 60.00209 * 9 7 5 11 11 H 1.48496 * 109.46664 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47077 * 300.00223 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47090 * 179.97438 * 15 13 3 17 17 C 1.34729 * 116.99990 * 179.97438 * 16 15 13 18 18 O 1.21493 * 120.00133 * 359.97438 * 17 16 15 19 19 C 1.47605 * 120.00242 * 179.97438 * 17 16 15 20 20 C 1.39709 * 120.11399 * 180.02562 * 19 17 16 21 21 C 1.37833 * 119.91779 * 179.97438 * 20 19 17 22 22 C 1.38612 * 120.15228 * 0.02562 * 21 20 19 23 23 F 1.35106 * 119.88080 * 179.97438 * 22 21 20 24 24 C 1.38846 * 120.23180 * 0.02562 * 22 21 20 25 25 F 1.35104 * 119.95753 * 179.97438 * 24 22 21 26 26 C 1.38031 * 120.07713 * 359.69935 * 24 22 21 27 27 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 28 28 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 29 29 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 31 31 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 32 32 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 33 33 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 34 34 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 36 36 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 37 37 H 1.08001 * 120.03923 * 0.02562 * 20 19 17 38 38 H 1.08004 * 119.91610 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.07769 * 180.28040 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.1415 0.6403 -3.5939 11 1 6.1607 2.7971 -4.7030 12 1 6.8406 2.6211 -2.3822 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 8 2.3075 2.1951 3.5759 17 6 2.1359 1.7095 4.8209 18 8 1.7337 0.5742 4.9801 19 6 2.4367 2.5568 5.9916 20 6 2.2601 2.0555 7.2836 21 6 2.5427 2.8500 8.3738 22 6 3.0011 4.1454 8.1913 23 9 3.2759 4.9196 9.2639 24 6 3.1778 4.6503 6.9100 25 9 3.6244 5.9138 6.7385 26 6 2.9031 3.8611 5.8114 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1412 -1.1383 34 1 3.6750 3.5167 -4.4438 35 1 0.9446 1.0112 2.5303 36 1 2.6229 0.4185 2.5298 37 1 1.9034 1.0463 7.4279 38 1 2.4058 2.4626 9.3727 39 1 3.0449 4.2523 4.8148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060900619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:09 Heat of formation + Delta-G solvation = -196.877758 kcal Electronic energy + Delta-G solvation = -26831.517759 eV Core-core repulsion = 22375.083492 eV Total energy + Delta-G solvation = -4456.434267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.67649 -49.74976 -41.93060 -40.69998 -39.59859 -37.64516 -36.97590 -34.93880 -32.66333 -31.85027 -31.69645 -30.55155 -28.42946 -25.74333 -24.82073 -24.38639 -24.01974 -22.29145 -20.34613 -19.74412 -18.95217 -18.68112 -18.49731 -17.96241 -17.89447 -17.67014 -17.46410 -17.30625 -16.83954 -16.24463 -16.15207 -15.94913 -15.65868 -15.21964 -14.91524 -14.74945 -14.58231 -14.27657 -14.10239 -13.99725 -13.60880 -13.52899 -13.28603 -13.21330 -13.08182 -12.65941 -12.65245 -12.51649 -12.22048 -12.06136 -11.89797 -11.80221 -11.73392 -10.73815 -10.64401 -10.36022 -10.04757 -9.54275 -8.23323 -6.37840 -0.84375 -0.20553 1.11269 1.12177 1.37275 1.41496 1.48469 1.62284 2.25206 2.28183 2.41856 2.52335 3.05892 3.07076 3.26381 3.42260 3.46125 3.76315 3.82683 3.95113 3.98401 4.16976 4.34724 4.39641 4.53292 4.60857 4.67989 4.76629 4.87528 4.95193 4.96353 5.03990 5.11749 5.20869 5.38123 5.44747 5.54132 5.79532 6.04014 6.40446 6.62435 6.71648 7.21430 7.36654 8.83908 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002696 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.917160 B =10381.452711 C =11614.343711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.498 3.502 14 O -0.578 6.578 15 C 0.063 3.937 16 O -0.345 6.345 17 C 0.515 3.485 18 O -0.508 6.508 19 C -0.116 4.116 20 C -0.018 4.018 21 C -0.115 4.115 22 C 0.102 3.898 23 F -0.125 7.125 24 C 0.041 3.959 25 F -0.136 7.136 26 C -0.072 4.072 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.029 0.971 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 -7.354 24.338 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.013 4.013 16 O -0.260 6.260 17 C 0.360 3.640 18 O -0.398 6.398 19 C -0.117 4.117 20 C -0.036 4.036 21 C -0.133 4.133 22 C 0.082 3.918 23 F -0.103 7.103 24 C 0.021 3.979 25 F -0.115 7.115 26 C -0.091 4.091 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.198 0.802 38 H 0.214 0.786 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.091 -6.931 24.183 25.666 hybrid contribution 1.021 0.888 -0.967 1.663 sum -4.070 -6.043 23.216 24.332 Atomic orbital electron populations 1.22182 0.94316 1.03812 1.01858 1.21883 0.95558 0.80895 1.04516 1.48202 1.63563 1.15299 1.05641 1.18779 0.95541 0.91656 0.79835 1.21687 0.97860 1.32266 1.06607 0.92640 1.25839 1.02328 0.94432 0.96425 1.70038 1.37818 1.34047 1.14819 0.85484 0.79054 0.79076 0.77315 1.18338 1.20445 1.20410 1.20571 0.78365 0.86665 0.85891 1.90688 1.47135 1.20236 1.87762 1.22910 1.05176 0.91885 0.81362 1.86597 1.78951 1.45537 1.14944 1.21157 0.74201 0.85612 0.82985 1.90841 1.43022 1.19195 1.86725 1.18951 1.07414 0.93320 0.92022 1.21484 0.92602 1.01535 0.88021 1.21397 0.99369 0.89799 1.02761 1.18216 1.00994 0.91251 0.81343 1.91566 1.91009 1.74588 1.53184 1.17661 1.05572 0.81475 0.93232 1.91545 1.87083 1.36661 1.96173 1.21420 0.95332 0.92958 0.99363 0.92231 0.93876 0.88354 0.90114 0.88087 0.95270 0.98288 0.92366 0.85468 0.85890 0.80211 0.78574 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.09 2.65 5.93 86.38 0.51 3.16 16 3 N -0.59 -24.36 2.46 -826.16 -2.03 -26.39 16 4 C 0.26 13.91 5.16 85.63 0.44 14.35 16 5 C -0.55 -31.02 9.39 25.60 0.24 -30.78 16 6 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.51 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.50 20.47 7.75 87.66 0.68 21.15 16 14 O -0.58 -30.21 16.08 15.78 0.25 -29.95 16 15 C 0.06 1.81 4.51 71.24 0.32 2.13 16 16 O -0.34 -10.39 9.00 -50.00 -0.45 -10.84 16 17 C 0.52 12.46 7.89 70.29 0.55 13.02 16 18 O -0.51 -12.58 16.13 19.86 0.32 -12.26 16 19 C -0.12 -2.21 5.87 -20.10 -0.12 -2.33 16 20 C -0.02 -0.22 9.59 22.53 0.22 0.00 16 21 C -0.12 -1.08 10.01 22.26 0.22 -0.86 16 22 C 0.10 1.61 7.31 22.50 0.16 1.78 16 23 F -0.13 -2.17 17.17 44.97 0.77 -1.40 16 24 C 0.04 0.83 7.30 22.37 0.16 1.00 16 25 F -0.14 -3.33 17.18 44.97 0.77 -2.56 16 26 C -0.07 -1.53 9.59 22.57 0.22 -1.31 16 27 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 2.42 8.07 -2.38 -0.02 2.40 16 31 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 32 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 33 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.13 2.89 7.18 -2.39 -0.02 2.88 16 36 H 0.12 2.93 7.40 -2.39 -0.02 2.91 16 37 H 0.18 1.39 7.65 -2.91 -0.02 1.37 16 38 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.15 3.71 7.61 -2.91 -0.02 3.69 16 Total: -1.00 -76.70 355.68 7.86 -68.84 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.10 Total: 4.19 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 4.81 Total: 19.26 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.74 Total: -81.85 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: 0.12 Total: -53.05 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 1.54 Total: -3.95 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.70 7.86 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060900619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.035 kcal (2) G-P(sol) polarization free energy of solvation -76.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds